Rh1DG337400

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012403
Physical Location & Seq
Forward (+)
56248820 .. 56251201
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG337400.1

Sequence Viewer

Length: 390 bp
ATGGATCCTTATGTTGCGGTGAAATACAAAAGCCAAGAGCGCAGGACCAGCGTGGCCAGAGGACAAGGCGGCAATCCGGTGTGGAATGAGAGATTAATATTCAGGGTGGAGTATCCAGGGTCCGGCGACCAGTGTAAGCTCACCCTTAAAATAATGGATAAGGACACCTTCACTGCTGATGACACCATAGGCGAAGCAACGATCTATGTTAAGGAGTTATTGGAACTGGGTGTGGAGAATGGATCAGCTGAATTACATCCTAAGAAATATAGTGTGGTTGCTGCAGATAAAAGTTTCCGTGGAGAAATTCAAGTTGGTGTAACTTTCACCAAGAAGGTATTTATTTTTTCTCTTTTTTACTTCCATTTTGACTTGATACCAAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

6.73

Isoelectric Point (pI)

12.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 1 - 81 1.5e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55470 AT3G55470
fragaria_vesca FvH4_7g22610
malus_domestica MD01G1135100.v1.1 MD07G1199800.v1.1
prunus_persica Prupe.2G236500_v2.0.a1 Prupe.2G236500_v2.0.a1
pyrus_communis pycom07g18660
rosa_chinensis RchiOBHm_Chr1g0367731
rosa_laevigata RLG00000027267
rosa_multiflora Rmu_co8228921.1_g000001 Rmu_sc0016772.1_g000001
rosa_roxburghii Rroxscaffold_4G00289270
rosa_rugosa Rorug01G0336300
rosa_samantha Rh1AG343400 Rh1BG305200 Rh1CG320800 Rh1DG337400
rosa_wichuraiana Rw1G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 69
AclWI GGATC 2 cut(s) 12, 250
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 139, 248
AluI AGCT 2 cut(s) 139, 248
AlwI GGATC 2 cut(s) 12, 250
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 306
AseI ATTAAT 1 cut(s) 95
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 45, 120
AsuHPI GGTGA 3 cut(s) 31, 133, 319
AvaII GGWCC 2 cut(s) 45, 120
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 2 cut(s) 70, 282
BlsI GCNGC 2 cut(s) 71, 283
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 45, 120
BmgT120I GGNCC 2 cut(s) 45, 120
BmiI GGNNCC 2 cut(s) 6, 121
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 116, 298
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 130, 231
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 116, 298
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 130, 231
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 77, 123
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 4, 201, 242
BspACI CCGC 2 cut(s) 17, 69
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 6, 121
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 2 cut(s) 12, 250
BsrI ACTGG 2 cut(s) 130, 231
BssECI CCNNGG 2 cut(s) 116, 298
BssMI GATC 3 cut(s) 4, 201, 242
Bst2UI CCWGG 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 7, 204, 245
BstMBI GATC 3 cut(s) 4, 201, 242
BstMWI GCNNNNNNNGC 2 cut(s) 39, 48
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 137, 171
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 45, 120
CviJI RGCY 4 cut(s) 33, 56, 139, 248
CviKI_1 RGCY 4 cut(s) 33, 56, 139, 248
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 6, 203, 244
DpnII GATC 3 cut(s) 4, 201, 242
EaeI YGGCCR 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 45, 120
EcoRII CCWGG 1 cut(s) 115
FaiI YATR 4 cut(s) 12, 188, 207, 270
FalI AAGNNNNNCTT 2 cut(s) 152, 184
Fnu4HI GCNGC 2 cut(s) 70, 282
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 70, 282
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 70, 282
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 77, 123
HhaI GCGC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HpaII CCGG 2 cut(s) 77, 123
HphI GGTGA 3 cut(s) 31, 133, 319
HpyAV CCTTC 2 cut(s) 178, 328
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 48
HpyF3I CTNAG 1 cut(s) 261
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 4, 201, 242
Lsp1109I GCAGC 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 6, 203, 244
MboI GATC 3 cut(s) 4, 201, 242
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 251, 306
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 95, 147, 210
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 77, 123
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 39, 48
NdeII GATC 3 cut(s) 4, 201, 242
NlaIV GGNNCC 2 cut(s) 6, 121
PkrI GCNGC 2 cut(s) 71, 283
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 6, 121
PspPI GGNCC 2 cut(s) 45, 120
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 95, 147, 210
SatI GCNGC 2 cut(s) 70, 282
Sau3AI GATC 3 cut(s) 4, 201, 242
Sau96I GGNCC 2 cut(s) 45, 120
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 141, 170, 250, 339
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 45, 120
Sse9I AATT 2 cut(s) 251, 306
SsiI CCGC 2 cut(s) 17, 69
SspI AATATT 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 115
TasI AATT 2 cut(s) 251, 306
TauI GCSGC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 95, 147, 210
Tru9I TTAA 3 cut(s) 95, 147, 210
TscAI CASTG 2 cut(s) 137, 178
TseI GCWGC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 2 cut(s) 137, 178
VpaK11BI GGWCC 2 cut(s) 45, 120
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.