Prupe.2G236500_v2.0.a1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012403
Physical Location & Seq
Forward (+)
25801075 .. 25803509
2435 bp
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UTR
Exon/CDS
Intron
Prupe.2G236500.1

Sequence Viewer

Length: 471 bp
ATGGCAGTTGGGATATTGGAGGTGATGCTTGTGAGTGCAAAGGGGCTTGGAGACACCGATTTATTCAGTCGTATGGATCCTTATGTTCTGATTCAATACAAAGGCCAAGAGCGCAAGAGCAGCGTGGCTAGAGAGCAAGGCAGCAGTCCGGTGTGGAACGAGAGATTTACATTCAGGGCAGAGTATCCAGGGTCAGGGGAGCAGTACAAGGTCACCCTCAAAATCATGGATAAAGACACCTTCACTGCTGATGACTATATAGGAGAAGCAACGATATATGTTAAGGATTTATTGGCACTGGGTGTGGAGAAAGGAACTGCTCAACTTCATCCTCTTAAATATAGTGTTGTTCGTGCAGATGGTACTTATCGTGGGGAGATTCAAGTTGGTCTAACTTTCACTCCAAGGGCAGAACAGCAACATGAGGGACAAGAGTTTGGAGGATGGAAGCACAGTGATGCATATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

157

Amino Acids

17.48

Weight (kDa)

5.4

Isoelectric Point (pI)

18.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55470 AT3G55470
fragaria_vesca FvH4_7g22610
malus_domestica MD01G1135100.v1.1 MD07G1199800.v1.1
prunus_persica Prupe.2G236500_v2.0.a1 Prupe.2G236500_v2.0.a1
pyrus_communis pycom07g18660
rosa_chinensis RchiOBHm_Chr1g0367731
rosa_laevigata RLG00000027267
rosa_multiflora Rmu_co8228921.1_g000001 Rmu_sc0016772.1_g000001
rosa_roxburghii Rroxscaffold_4G00289270
rosa_rugosa Rorug01G0336300
rosa_samantha Rh1AG343400 Rh1BG305200 Rh1CG320800 Rh1DG337400
rosa_wichuraiana Rw1G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 71, 84
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 2 cut(s) 206, 364
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 95, 383
AjnI CCWGG 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 71, 84
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 2 cut(s) 120, 141
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 34, 205
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 132, 153
BccI CCATC 2 cut(s) 353, 438
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 2 cut(s) 121, 142
BlsI GCNGC 2 cut(s) 122, 143
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 15, 448
BmuI ACTGGG 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 188, 404
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 188, 404
BseGI GGATG 2 cut(s) 328, 449
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 132, 153
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 2 cut(s) 71, 84
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 188, 404
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 455
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 2 cut(s) 328, 449
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 111, 120
BstNI CCWGG 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 132, 153
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 328, 449
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 243, 296, 460
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 205, 363
CviAII CATG 2 cut(s) 226, 422
CviJI RGCY 3 cut(s) 46, 105, 128
CviKI_1 RGCY 3 cut(s) 46, 105, 128
CviQI GTAC 2 cut(s) 205, 363
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 404
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 229, 425
FaqI GGGAC 1 cut(s) 441
FatI CATG 2 cut(s) 225, 421
Fnu4HI GCNGC 2 cut(s) 121, 142
FokI GGATG 2 cut(s) 315, 456
Fsp4HI GCNGC 2 cut(s) 121, 142
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 121, 142
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 229, 425
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 91, 379
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 34, 205
Hpy188I TCNGA 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 3 cut(s) 38, 356, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 120
Hsp92II CATG 2 cut(s) 229, 425
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 160, 162, 174, 180, 201, 284
Lsp1109I GCAGC 2 cut(s) 132, 153
LweI GCATC 2 cut(s) 15, 448
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MflI RGATCY 1 cut(s) 76
MnlI CCTC 5 cut(s) 13, 227, 342, 418, 434
Mph1103I ATGCAT 1 cut(s) 463
MseI TTAA 2 cut(s) 282, 336
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 111, 120
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 229, 425
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 463
PfeI GAWTC 2 cut(s) 91, 379
PkrI GCNGC 2 cut(s) 122, 143
Psp6I CCWGG 1 cut(s) 187
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 206, 364
RsaNI GTAC 2 cut(s) 205, 363
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 2 cut(s) 282, 336
SatI GCNGC 2 cut(s) 121, 142
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 189
SetI ASST 3 cut(s) 24, 213, 242
SfaNI GCATC 2 cut(s) 15, 448
SmiMI CAYNNNNRTG 1 cut(s) 456
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 455
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 2 cut(s) 91, 379
Tru1I TTAA 2 cut(s) 282, 336
Tru9I TTAA 2 cut(s) 282, 336
TscAI CASTG 3 cut(s) 250, 303, 460
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 120, 141
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 3 cut(s) 250, 303, 460
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.