FvH4_7g22610

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012403
Physical Location & Seq
Forward (+)
17816039 .. 17819200
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22610.t1

Sequence Viewer

Length: 471 bp
ATGGCAGTTGGGTTGATGGAGGTGCTCCTTGTGAATGCAAGAGGACTTGGAGATACAGATATCATTGGTCGGATGGATCCTTATGTTGTGGTGAAATACAAAAGCCAAGAGCACAGGACCAGTGTGGCCAGAGGACAAGGTGGCAATCCGGTGTGGAACGAGAGATTAATATTCAGGGTTGAGTATCCTGGGTCTGGTGAGCAGTATAAGCTGACCTTTAAGATCATGGACAAAGACACCTTCACTCCTGATGATACTATAGGTGAAGCAACGATCTATGTTAAGGAGTTATTGGAACTGGGTGTGGAGAAAGGATCTGCTGAAATACATCCTAAAAAATATAGTGTGGTTGCTGCAGATAAAAGTTTTCGTGGAGATATCCAAGTTGGTGTAACTTTCACCAAGAAGGCGGAACAGGAATATGGGGGACAAGAATTTGGAGGATGGAAGCATAGTGAATCATATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

157

Amino Acids

17.41

Weight (kDa)

5.67

Isoelectric Point (pI)

15.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 100 5.4e-21 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55470 AT3G55470
fragaria_vesca FvH4_7g22610
malus_domestica MD01G1135100.v1.1 MD07G1199800.v1.1
prunus_persica Prupe.2G236500_v2.0.a1 Prupe.2G236500_v2.0.a1
pyrus_communis pycom07g18660
rosa_chinensis RchiOBHm_Chr1g0367731
rosa_laevigata RLG00000027267
rosa_multiflora Rmu_co8228921.1_g000001 Rmu_sc0016772.1_g000001
rosa_roxburghii Rroxscaffold_4G00289270
rosa_rugosa Rorug01G0336300
rosa_samantha Rh1AG343400 Rh1BG305200 Rh1CG320800 Rh1DG337400
rosa_wichuraiana Rw1G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 410
AclWI GGATC 3 cut(s) 71, 84, 322
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 2 cut(s) 27, 114
AlwI GGATC 3 cut(s) 71, 84, 322
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 434
AseI ATTAAT 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 4 cut(s) 103, 209, 275, 391
AvaII GGWCC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 27, 114
BbvI GCAGC 1 cut(s) 340
BccI CCATC 3 cut(s) 10, 67, 438
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 258, 354
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 120, 303
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 78, 328, 449
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 120, 303
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 27, 114
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 27, 114
Bsp143I GATC 4 cut(s) 76, 222, 273, 314
BspACI CCGC 1 cut(s) 410
BspANI GGCC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 3 cut(s) 71, 84, 322
BsrI ACTGG 2 cut(s) 120, 303
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 76, 222, 273, 314
Bst2UI CCWGG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 78, 328, 449
BstKTI GATC 4 cut(s) 79, 225, 276, 317
BstMBI GATC 4 cut(s) 76, 222, 273, 314
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 2 cut(s) 258, 354
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 76, 314
BstYI RGATCY 2 cut(s) 76, 314
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 78, 328, 449
BtsIMutI CAGTG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 105, 128, 211
CviKI_1 RGCY 3 cut(s) 105, 128, 211
DpnI GATC 4 cut(s) 78, 224, 275, 316
DpnII GATC 4 cut(s) 76, 222, 273, 314
EaeI YGGCCR 1 cut(s) 126
EciI GGCGGA 1 cut(s) 425
Eco32I GATATC 2 cut(s) 61, 379
Eco47I GGWCC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 2 cut(s) 61, 379
FaeI CATG 1 cut(s) 229
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 3 cut(s) 85, 315, 456
Fsp4HI GCNGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 458
HpaII CCGG 1 cut(s) 149
HphI GGTGA 4 cut(s) 103, 209, 275, 391
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 250, 400
HpyCH4V TGCA 2 cut(s) 38, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 76, 222, 273, 314
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 391
MalI GATC 4 cut(s) 78, 224, 275, 316
MboI GATC 4 cut(s) 76, 222, 273, 314
MflI RGATCY 2 cut(s) 76, 314
MhlI GDGCHC 2 cut(s) 27, 114
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 434
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 4 cut(s) 13, 35, 125, 434
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 167, 219, 282
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 4 cut(s) 76, 222, 273, 314
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 78
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 458
PkrI GCNGC 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 76, 314
SaqAI TTAA 3 cut(s) 167, 219, 282
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 76, 222, 273, 314
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 2 cut(s) 27, 114
SetI ASST 6 cut(s) 24, 142, 213, 218, 242, 265
SfcI CTRYAG 2 cut(s) 258, 354
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 434
SsiI CCGC 1 cut(s) 410
SspI AATATT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 187
TasI AATT 1 cut(s) 434
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 3 cut(s) 167, 219, 282
Tru9I TTAA 3 cut(s) 167, 219, 282
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.