MD07G1199800.v1.1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012403
Physical Location & Seq
Forward (+)
27803523 .. 27806056
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1199800.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGCAGTTGGGTTACTGGAGGTGAATCTTGTGAGTGCAAAGGGCCTCGGAGACACCGATTTATTCACTCGTATGGATCCGTATGTTGTGATCCAATACAAAGGCCAAGAGAAAAAGAGCAGCGTCGCGAGAGAACAAGGAAGTAATCCGGAGTGGAACGAGAAATTTACATTCAGGGCAGAATATCCAGGGTCAGGGGAGCAGTATAAGATCACCCTCAAAATCATGGACAAAGACACCTTCACTTCTGATGACTACATCGGCCAAGCAACGATATATGTGAAGGATTTATTGGCACAGGGAGTGCAGAATGGAACTGCAGAGTTACATCCTCTTAAATATAGCGTTGTTCGCGCTGATAATACTTATCGTGGGGAGATTAAAGTCGGTCTAACTTTCACTCCGAGGGTAGAACAGGATTATGGGGGACAGACGTTTGGAGGATGGAAGCATAGTGCTGCATATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

5.71

Isoelectric Point (pI)

10.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 107 1e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55470 AT3G55470
fragaria_vesca FvH4_7g22610
malus_domestica MD01G1135100.v1.1 MD07G1199800.v1.1
prunus_persica Prupe.2G236500_v2.0.a1 Prupe.2G236500_v2.0.a1
pyrus_communis pycom07g18660
rosa_chinensis RchiOBHm_Chr1g0367731
rosa_laevigata RLG00000027267
rosa_multiflora Rmu_co8228921.1_g000001 Rmu_sc0016772.1_g000001
rosa_roxburghii Rroxscaffold_4G00289270
rosa_rugosa Rorug01G0336300
rosa_samantha Rh1AG343400 Rh1BG305200 Rh1CG320800 Rh1DG337400
rosa_wichuraiana Rw1G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 128, 354
AccIII TCCGGA 1 cut(s) 148
AclWI GGATC 3 cut(s) 71, 84, 85
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 3 cut(s) 71, 84, 85
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 3 cut(s) 43, 103, 262
ApeKI GCWGC 2 cut(s) 120, 458
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 34, 205
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 132, 445
BccI CCATC 1 cut(s) 438
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 121, 459
BlsI GCNGC 2 cut(s) 122, 460
Bme1390I CCNGG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 46, 188, 404
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 46, 188, 404
BseGI GGATG 2 cut(s) 328, 449
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 132, 445
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 2 cut(s) 128, 354
BshFI GGCC 3 cut(s) 45, 105, 264
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 3 cut(s) 45, 105, 264
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 3 cut(s) 76, 90, 210
Bsp68I TCGCGA 1 cut(s) 128
BspANI GGCC 3 cut(s) 45, 105, 264
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 2 cut(s) 128, 354
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 71, 84, 85
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 46, 188, 404
BssMI GATC 3 cut(s) 76, 90, 210
Bst2UI CCWGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 328, 449
BstFNI CGCG 2 cut(s) 128, 354
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 3 cut(s) 79, 93, 213
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 76, 90, 210
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 2 cut(s) 128, 354
BstV1I GCAGC 2 cut(s) 132, 445
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 3 cut(s) 45, 105, 264
BtsCI GGATG 2 cut(s) 328, 449
BtuMI TCGCGA 1 cut(s) 128
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 1 cut(s) 112
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 45, 105, 264
CviKI_1 RGCY 3 cut(s) 45, 105, 264
DpnI GATC 3 cut(s) 78, 92, 212
DpnII GATC 3 cut(s) 76, 90, 210
EaeI YGGCCR 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 229
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 121, 459
FokI GGATG 2 cut(s) 315, 456
Fsp4HI GCNGC 2 cut(s) 121, 459
GlaI GCGC 1 cut(s) 355
GluI GCNGC 2 cut(s) 121, 459
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 3 cut(s) 45, 105, 264
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 356
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 34, 205
Hpy188I TCNGA 3 cut(s) 50, 250, 405
Hpy188III TCNNGA 2 cut(s) 127, 149
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 250, 277
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 38, 307, 320, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 1 cut(s) 354
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 76, 90, 210
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 8 cut(s) 2, 160, 162, 174, 180, 201, 284, 401
Lsp1109I GCAGC 2 cut(s) 132, 445
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 2 cut(s) 12, 324
MalI GATC 3 cut(s) 78, 92, 212
MboI GATC 3 cut(s) 76, 90, 210
MflI RGATCY 1 cut(s) 76
MluCI AATT 1 cut(s) 164
MnlI CCTC 6 cut(s) 13, 56, 227, 342, 399, 434
MroI TCCGGA 1 cut(s) 148
MseI TTAA 2 cut(s) 336, 381
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 2 cut(s) 128, 354
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 3 cut(s) 76, 90, 210
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 78
NruI TCGCGA 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 122, 460
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 76
RruI TCGCGA 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 336, 381
SatI GCNGC 2 cut(s) 121, 459
Sau3AI GATC 3 cut(s) 76, 90, 210
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 189
SetI ASST 3 cut(s) 24, 242, 437
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 437
TaqII GACCGA 1 cut(s) 377
TasI AATT 1 cut(s) 164
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 2 cut(s) 336, 381
Tru9I TTAA 2 cut(s) 336, 381
TseI GCWGC 2 cut(s) 120, 458
TspGWI ACGGA 1 cut(s) 69
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.