AT3G55480

Belongs to the adaptor complexes large subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009227
Physical Location & Seq
Reverse (-)
20566248 .. 20571248
5001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55480.2

Sequence Viewer

Length: 2964 bp
ATGGCTGGGATTCGCTTACATGTTATTGCACCTCTTGCACTTGCAGCTGTGAGTAAATGTGCTAGAGATCCAGCTGTTTATGTTCGGAGATGTGCTGCAAACGCTCTTCCGAAGTTGCATGATTTGCGGCTGGAAGAACATGCTTCTGCGATTGAAGAGCTAGTTGGGATACTGTTGAATGACCATTCTCCAGGAGTAGTTGGAGCTGCGGCAGCGGCATTCACCTCTATCTGTCCAAATAACTTCAAACTGATTGGGAAGAACTATAAGAAGTTGTGCCAGATTCTCCCTGACGTTGAAGAGTGGGGTCAGATATTACTCATAGGAACTCTTTTGCGCTATGTGGTTGCTAGGCATGGACTTGTACGGGAATCTTTGATGTTGTCCATACATGGTACGAATAGTAATGGCTTCTGTGAGAAGGATGGCCTAGGCAGAGATCTTACATTGGATAAAGAAGATGGTGGTAAAAGTGATTCATTTGATGTTAATCTGGTCAGTCTTGTATCTAAATGTTACATTCAAGGTCCAGATGAGTATCTATCAAGATCCAGTTGCACCGATACAGTGTCATCTGCTTTCGATACCAAAGAGACCACATCTATTGCACATAATGAAGATGTTAAGATCCTGCTTCAGTGTACATCTCCATTGTTATGGAGTAATAACAGTGCGGTTGTACTAGCAGCAGCTGGCGTTCAATGGATAATGGCGCCTCTGGAAGATGTTAAGAAAATTGTTAAACCGCTCTTGTTTTTGCTTAGGTCATCTAGCGCCTCCAAATATGTGGTCCTCTGCAATATCCTAGTTTTTGCCAAAGCAGTCCCTTCTCTCTTTGCTCCACACTTCGAAAATTTCTTTATTTGTTCCTCAGATGCATATCAAGTGAAAGCATACAAGCTGGAAATGCTTTCTCTCATTGCTACCACTTCATCTATCGCTTCAATTTTGAGAGAGTTTGAGGATTATATTAAAGATCCAGACAGGAGATTTGCGGCTGATACAGTTGCAGCAATTGGTTTGTGCGCAAAAAGACTGATGACAATTCCAACTACATGTCTTGATGGATTGTTAGCACTAGTTCGACAGGAATCTTTTGCTGGCGATTTTGAGTCCGCGGATGGAGAAGCTGGAGTATTGGTGCAAGCCGTGATGTCAATTCAGACTATGATAGAGCGAGACCCCCTTCGTCATGAGAAAGTGTTAATTCAGCTGTTTCGTAGTCTGGATTCAATCAAGGTAGCTGCTGCTCGTGCAACTATTATTTGGATGGTGGGGGTCTACTGCTCTTTGGGTCATATCATTCCTAGGATGCTGACCACAATAACCAAGTACCTTGCATGGAGCTTTAAATCAGAGGCATCAGAGACAAAACTACAGATTCTTAATACTATTGCTAAGGTTCTAATAAGTGCAGAGGCTGGTGACTTTCATATGTTGAAAAGGATTGTGGTCTATGTGTTTGAATTGGGCGAATATGACTTAAGCTATGATATTCGTGATCGAACTCGTTTCCTGAAGAAACTGCTGTCATGCAAATTAGCTAGTCATGAGCCGGCAGAAGACAGTGTTGCATCACAAGAAAATATTGCTGCGCATGTTGTGGAACATGTCTTTGGAAGAAAACTGAAATCTGTTTCACCTATAACCCTGCACAATCGTTTTTATCTTCCTGGATCTCTGTCACAGATAGTTCTTCATGCAGCCCCTGGATATGAACCTCTTCCAAAGCCCTGCAGTTTTGTGTATGAAGAACAGGACCAGCTGTCAGATTTAGATAAACAAAGAGAGGCCGCAGCTGATTTAGATGGTTCTGAGGAATCCTCTGAAACAGGGGATGAGAATGGCTCCTCTGATTATGACTCTGAATCTTCTAATGGTTCGGATTTTAGCAGTGAAGGTGATGAAAGAACAGTGTCTAATGACGCCAATGACCCAGCTGCTCCTTTAATTCAAATTTCAGAGACTTCTGTTTCCGCTGACCAGGAAGAACTAAGGTCCAGAAGGGCCCTGGATTTGTGGTTAGATGATCAGCCTAGTACATCAAACCAAACTCCATCTGCATTAAATAGTAATCAGAGCTCTTATGCGAAGATATCCATTGGTGATGTAGGAAGCCGAGTTAAGCCTAAAAGCTATAGTCTCGTAGACCCTGGAAATGGCAGTGGCTTGAAGGTAGACTATGCCTTTTTATCTGAAGTCTCTAATGTATCTCCATTACATGTTTGCGTAGAAGTTCTGTTTGAGAACAGTTCTGCTGAACCTATCCTGGAGGTGAATTTGGAAGATGAAGAATCAATGAAGGTAGCAGACTCTTCTGAACAGACATTGGTTGGTAAAGCAAATGCATCTTACAACAATATACCAACCCTAATTCCAATGGAGGAAATTAGCTGCCTTGAACCACATCAGAGCACAAAGAGGCTTATCCAGGTTCGGTTTCATCACCACCTGCTTCCCATGAGGTTAACCTTACATTACAATGAAAAGAAAGTTCCTGTCAAGTTACGACCTGATCTTGGATACCTTGTGAAACCATTTTCAATGAGCATCGAGGAATTCTTAGCTACAGAATCTCGATTACCTGGAATGTTTGAGTATAGTCGAAGGTGTACTTTTGACGATCATGTTAAAGATTCAAGAACGGAGAATGGGAAAGACAAATTTCTTAGCATCTGCGAGAGTATAACACTAAAGGTGCTTAGCAACTCAAATCTACACCTTGTATCTGTGGATTTACCAGTTGCAAACTCACTCGAAGATGCAACTGGTCTGCGATTAAGATTCAGCAGCAAAATCTTGAGCAGTGAGATCCCTCTTTTGATTACCATCACAGTCGAAGGCAAATGCACCGAAGTTCTGAATTTAACAGTCAAGATCAATTGCGAAGAAACGGTTTTTGGTTTAAACCTGTTGAACAGGATAGCTAATTTCATGGTTGAGCCGTCTTCTTCAGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
AP3B1_C Adaptin_N

Protein Analysis

987

Amino Acids

108.65

Weight (kDa)

5.29

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 40 - 639 2.7e-93 Adaptin N terminal region
HEAT_2 PF13646 114 - 201 9e-07 HEAT repeats
Cnd1 PF12717 120 - 244 1.1e-14 non-SMC mitotic condensation complex subunit 1
AP3B1_C PF14796 813 - 900 9.8e-06 Clathrin-adaptor complex-3 beta-1 subunit C-terminal
AP3B1_C_2 PF24080 969 - 1105 5.4e-10 AP-3 complex subunit beta-1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2460
Acc16I TGCGCA 2 cut(s) 1027, 1596
Acc36I ACCTGC 1 cut(s) 2460
AccB1I GGYRCC 1 cut(s) 712
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 3 cut(s) 1281, 2148, 2178
AccII CGCG 1 cut(s) 1118
AclWI GGATC 6 cut(s) 62, 543, 622, 971, 1684, 2806
AcsI RAATTY 6 cut(s) 853, 1956, 2278, 2558, 2663, 2863
AcuI CTGAAG 4 cut(s) 620, 1538, 2217, 2937
AcyI GRCGYC 2 cut(s) 713, 1926
AfaI GTAC 7 cut(s) 366, 397, 643, 681, 1334, 2041, 2614
AfiI CCNNNNNNNGG 2 cut(s) 2159, 2519
AflII CTTAAG 1 cut(s) 1483
AflIII ACRYGT 4 cut(s) 19, 1055, 1609, 2221
AhdI GACNNNNNGTC 1 cut(s) 1765
AhlI ACTAGT 1 cut(s) 1078
AjnI CCWGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
AjuI GAANNNNNNNTTGG 6 cut(s) 147, 179, 1599, 1631, 2883, 2915
Alw21I GWGCWC 2 cut(s) 2084, 2417
Alw26I GTCTC 6 cut(s) 587, 1173, 1361, 1958, 2147, 2206
AlwI GGATC 6 cut(s) 62, 543, 622, 971, 1684, 2806
AlwNI CAGNNNCTG 3 cut(s) 692, 1421, 1709
AoxI GGCC 3 cut(s) 427, 1791, 2007
ApaI GGGCCC 1 cut(s) 2011
ApoI RAATTY 6 cut(s) 853, 1956, 2278, 2558, 2663, 2863
ArsI GACNNNNNNTTYG 4 cut(s) 774, 806, 974, 1006
Asp700I GAANNNNTTC 1 cut(s) 1722
AspA2I CCTAGG 2 cut(s) 430, 1307
AspLEI GCGC 5 cut(s) 339, 715, 776, 1028, 1597
AspS9I GGNCC 6 cut(s) 527, 790, 1759, 1998, 2007, 2008
AsuHPI GGTGA 7 cut(s) 214, 1436, 1632, 1913, 2117, 2287, 2438
AsuII TTCGAA 1 cut(s) 849
AvaII GGWCC 4 cut(s) 527, 790, 1759, 1998
AvrII CCTAGG 2 cut(s) 430, 1307
BaeGI GKGCMC 1 cut(s) 2011
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 2 cut(s) 2011, 2084
BauI CACGAG 1 cut(s) 1251
BbsI GAAGAC 2 cut(s) 1569, 2940
Bbv12I GWGCWC 2 cut(s) 2084, 2417
BccI CCATC 8 cut(s) 419, 455, 1058, 1115, 1264, 1802, 2065, 2837
BceAI ACGGC 2 cut(s) 1133, 2929
BciT130I CCWGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
BciVI GTATCC 2 cut(s) 162, 2516
BclI TGATCA 1 cut(s) 2029
BcoDI GTCTC 6 cut(s) 587, 1173, 1361, 1958, 2147, 2206
BcuI ACTAGT 1 cut(s) 1078
BfmI CTRYAG 4 cut(s) 1376, 1735, 2137, 2568
BfoI RGCGCY 2 cut(s) 716, 777
BfrI CTTAAG 1 cut(s) 1483
BfuAI ACCTGC 1 cut(s) 2460
BfuI GTATCC 2 cut(s) 162, 2516
BglII AGATCT 1 cut(s) 439
BlnI CCTAGG 2 cut(s) 430, 1307
BlpI GCTNAGC 1 cut(s) 2702
Bme1390I CCNGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
Bme18I GGWCC 4 cut(s) 527, 790, 1759, 1998
BmeRI GACNNNNNGTC 1 cut(s) 1765
BmgT120I GGNCC 6 cut(s) 527, 790, 1759, 1998, 2007, 2008
BmiI GGNNCC 3 cut(s) 714, 1849, 2009
BmrFI CCNGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
BmsI GCATC 8 cut(s) 865, 1302, 1370, 1583, 2357, 2559, 2682, 2752
BpiI GAAGAC 2 cut(s) 1569, 2940
BplI GAGNNNNNCTC 4 cut(s) 1808, 1840, 1832, 1864
BpmI CTGGAG 3 cut(s) 174, 1152, 2291
Bpu10I CCTNAGC 2 cut(s) 761, 1398
Bpu1102I GCTNAGC 1 cut(s) 2702
Bpu14I TTCGAA 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 2821
BsaBI GATNNNNATC 4 cut(s) 489, 537, 879, 2828
BsaHI GRCGYC 2 cut(s) 713, 1926
BsaI GGTCTC 2 cut(s) 587, 1173
BsaJI CCNNGG 6 cut(s) 430, 1116, 1307, 1708, 2010, 2152
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 2 cut(s) 2159, 2519
Bse118I RCCGGY 1 cut(s) 1555
Bse1I ACTGG 3 cut(s) 552, 2741, 2773
Bse3DI GCAATG 1 cut(s) 918
Bse8I GATNNNNATC 4 cut(s) 489, 537, 879, 2828
BseBI CCWGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
BseDI CCNNGG 6 cut(s) 430, 1116, 1307, 1708, 2010, 2152
BseGI GGATG 5 cut(s) 430, 1126, 1275, 1317, 1843
BseJI GATNNNNATC 4 cut(s) 489, 537, 879, 2828
BseLI CCNNNNNNNGG 2 cut(s) 2159, 2519
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 2 cut(s) 885, 1806
BseNI ACTGG 3 cut(s) 552, 2741, 2773
BseRI GAGGAG 1 cut(s) 1840
BseSI GKGCMC 1 cut(s) 2011
BseYI CCCAGC 2 cut(s) 5, 1936
BsgI GTGCAG 2 cut(s) 1434, 1637
Bsh1236I CGCG 1 cut(s) 1118
BshFI GGCC 3 cut(s) 429, 1793, 2009
BshNI GGYRCC 1 cut(s) 712
BsiHKAI GWGCWC 2 cut(s) 2084, 2417
BsiSI CCGG 1 cut(s) 1556
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 2 cut(s) 2159, 2519
BsmAI GTCTC 6 cut(s) 587, 1173, 1361, 1958, 2147, 2206
BsmFI GGGAC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 429, 1793, 2009
Bso31I GGTCTC 2 cut(s) 587, 1173
Bsp119I TTCGAA 1 cut(s) 849
Bsp120I GGGCCC 1 cut(s) 2007
Bsp1286I GDGCHC 3 cut(s) 2011, 2084, 2417
Bsp1407I TGTACA 1 cut(s) 641
Bsp1720I GCTNAGC 1 cut(s) 2702
BspANI GGCC 3 cut(s) 429, 1793, 2009
BspCNI CTCAG 2 cut(s) 884, 1807
BspFNI CGCG 1 cut(s) 1118
BspHI TCATGA 2 cut(s) 1192, 1549
BspLI GGNNCC 3 cut(s) 714, 1849, 2009
BspMAI CTGCAG 1 cut(s) 1739
BspMI ACCTGC 1 cut(s) 2460
BspPI GGATC 6 cut(s) 62, 543, 622, 971, 1684, 2806
BspQI GCTCTTC 2 cut(s) 111, 150
BspT104I TTCGAA 1 cut(s) 849
BspT107I GGYRCC 1 cut(s) 712
BspTI CTTAAG 1 cut(s) 1483
BspTNI GGTCTC 2 cut(s) 587, 1173
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 1555
BsrGI TGTACA 1 cut(s) 641
BsrI ACTGG 3 cut(s) 552, 2741, 2773
BssAI RCCGGY 1 cut(s) 1555
BssECI CCNNGG 6 cut(s) 430, 1116, 1307, 1708, 2010, 2152
BssNI GRCGYC 2 cut(s) 713, 1926
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 2 cut(s) 430, 1307
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
Bst6I CTCTTC 5 cut(s) 111, 150, 294, 1728, 2320
BstACI GRCGYC 2 cut(s) 713, 1926
BstAFI CTTAAG 1 cut(s) 1483
BstAPI GCANNNNNTGC 2 cut(s) 35, 124
BstAUI TGTACA 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 849
BstC8I GCNNGC 4 cut(s) 694, 1102, 1146, 1557
BstDEI CTNAG 8 cut(s) 761, 871, 1398, 1815, 1994, 2563, 2669, 2702
BstDSI CCRYGG 1 cut(s) 1116
BstF5I GGATG 5 cut(s) 430, 1126, 1275, 1317, 1843
BstFNI CGCG 1 cut(s) 1118
BstH2I RGCGCY 2 cut(s) 716, 777
BstHHI GCGC 5 cut(s) 339, 715, 776, 1028, 1597
BstMAI GTCTC 6 cut(s) 587, 1173, 1361, 1958, 2147, 2206
BstMWI GCNNNNNNNGC 8 cut(s) 35, 44, 101, 124, 212, 215, 907, 1253
BstNI CCWGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
BstNSI RCATGY 6 cut(s) 23, 143, 1059, 1601, 1613, 2225
BstSCI CCNGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
BstSFI CTRYAG 4 cut(s) 1376, 1735, 2137, 2568
BstSLI GKGCMC 1 cut(s) 2011
BstUI CGCG 1 cut(s) 1118
BstV2I GAAGAC 2 cut(s) 1569, 2940
BstX2I RGATCY 7 cut(s) 67, 439, 548, 627, 976, 1676, 2811
BstXI CCANNNNNNTGG 2 cut(s) 657, 787
BstYI RGATCY 7 cut(s) 67, 439, 548, 627, 976, 1676, 2811
BsuI GTATCC 2 cut(s) 162, 2516
BsuRI GGCC 3 cut(s) 429, 1793, 2009
BtgI CCRYGG 1 cut(s) 1116
BtsCI GGATG 5 cut(s) 430, 1126, 1275, 1317, 1843
BtsI GCAGTG 3 cut(s) 1900, 2170, 2812
BtsIMutI CAGTG 8 cut(s) 573, 644, 676, 1573, 1900, 1920, 2170, 2812
BveI ACCTGC 1 cut(s) 2460
Cac8I GCNNGC 4 cut(s) 694, 1102, 1146, 1557
CaiI CAGNNNCTG 3 cut(s) 692, 1421, 1709
CciI TCATGA 2 cut(s) 1192, 1549
CfoI GCGC 5 cut(s) 339, 715, 776, 1028, 1597
Cfr10I RCCGGY 1 cut(s) 1555
Cfr13I GGNCC 6 cut(s) 527, 790, 1759, 1998, 2007, 2008
Cfr42I CCGCGG 1 cut(s) 1119
CseI GACGC 1 cut(s) 1934
Csp6I GTAC 7 cut(s) 365, 396, 642, 680, 1333, 2040, 2613
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviQI GTAC 7 cut(s) 365, 396, 642, 680, 1333, 2040, 2613
DdeI CTNAG 8 cut(s) 761, 871, 1398, 1815, 1994, 2563, 2669, 2702
DinI GGCGCC 1 cut(s) 714
DraI TTTAAA 2 cut(s) 1351, 2907
DriI GACNNNNNGTC 1 cut(s) 1765
Eam1104I CTCTTC 5 cut(s) 111, 150, 294, 1728, 2320
Eam1105I GACNNNNNGTC 1 cut(s) 1765
EarI CTCTTC 5 cut(s) 111, 150, 294, 1728, 2320
Ecl136II GAGCTC 1 cut(s) 2082
Eco130I CCWWGG 2 cut(s) 430, 1307
Eco24I GRGCYC 2 cut(s) 2011, 2084
Eco31I GGTCTC 2 cut(s) 587, 1173
Eco32I GATATC 1 cut(s) 2097
Eco47I GGWCC 4 cut(s) 527, 790, 1759, 1998
Eco53kI GAGCTC 1 cut(s) 2082
Eco57I CTGAAG 4 cut(s) 620, 1538, 2217, 2937
EcoICRI GAGCTC 1 cut(s) 2082
EcoO109I RGGNCCY 2 cut(s) 2007, 2008
EcoRI GAATTC 1 cut(s) 2558
EcoRII CCWGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
EcoRV GATATC 1 cut(s) 2097
EcoT14I CCWWGG 2 cut(s) 430, 1307
EcoT22I ATGCAT 2 cut(s) 880, 2350
EcoT38I GRGCYC 2 cut(s) 2011, 2084
EgeI GGCGCC 1 cut(s) 714
EheI GGCGCC 1 cut(s) 714
ErhI CCWWGG 2 cut(s) 430, 1307
FalI AAGNNNNNCTT 2 cut(s) 2599, 2631
FaqI GGGAC 1 cut(s) 809
FauNDI CATATG 1 cut(s) 1434
FbaI TGATCA 1 cut(s) 2029
FblI GTMKAC 3 cut(s) 1281, 2148, 2178
FokI GGATG 5 cut(s) 437, 1133, 1282, 1324, 1850
FriOI GRGCYC 2 cut(s) 2011, 2084
FspI TGCGCA 2 cut(s) 1027, 1596
GlaI GCGC 5 cut(s) 338, 714, 775, 1027, 1596
GsaI CCCAGC 2 cut(s) 9, 1940
GsuI CTGGAG 3 cut(s) 174, 1152, 2291
HaeII RGCGCY 2 cut(s) 716, 777
HaeIII GGCC 3 cut(s) 429, 1793, 2009
HapII CCGG 1 cut(s) 1556
HgaI GACGC 1 cut(s) 1934
HhaI GCGC 5 cut(s) 339, 715, 776, 1028, 1597
Hin1I GRCGYC 2 cut(s) 713, 1926
Hin6I GCGC 5 cut(s) 337, 713, 774, 1026, 1595
HinP1I GCGC 5 cut(s) 337, 713, 774, 1026, 1595
HincII GTYRAC 1 cut(s) 2469
HindII GTYRAC 1 cut(s) 2469
HpaI GTTAAC 1 cut(s) 2469
HpaII CCGG 1 cut(s) 1556
HphI GGTGA 7 cut(s) 214, 1436, 1632, 1913, 2117, 2287, 2438
Hpy166II GTNNAC 6 cut(s) 642, 1282, 2149, 2179, 2469, 2613
Hpy8I GTNNAC 6 cut(s) 642, 1282, 2149, 2179, 2469, 2613
HpyAV CCTTC 9 cut(s) 415, 837, 1196, 1892, 1998, 2167, 2296, 2601, 2834
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 44, 101, 124, 212, 215, 907, 1253
HpyF3I CTNAG 8 cut(s) 761, 871, 1398, 1815, 1994, 2563, 2669, 2702
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 713, 1926
HspAI GCGC 5 cut(s) 337, 713, 774, 1026, 1595
KasI GGCGCC 1 cut(s) 712
KroI GCCGGC 1 cut(s) 1555
KroNI GCCGGC 1 cut(s) 1557
Ksp22I TGATCA 1 cut(s) 2029
KspAI GTTAAC 1 cut(s) 2469
KspI CCGCGG 1 cut(s) 1119
LguI GCTCTTC 2 cut(s) 111, 150
LmnI GCTCC 5 cut(s) 203, 844, 1344, 1853, 1948
LweI GCATC 8 cut(s) 865, 1302, 1370, 1583, 2357, 2559, 2682, 2752
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 515, 1424, 1683, 2505
MbiI CCGCTC 1 cut(s) 748
MfeI CAATTG 2 cut(s) 1014, 2881
MflI RGATCY 7 cut(s) 67, 439, 548, 627, 976, 1676, 2811
MhlI GDGCHC 3 cut(s) 2011, 2084, 2417
Mly113I GGCGCC 1 cut(s) 713
MlyI GAGTC 3 cut(s) 1121, 1856, 2306
MmeI TCCRAC 2 cut(s) 181, 1073
Mph1103I ATGCAT 2 cut(s) 880, 2350
MroNI GCCGGC 1 cut(s) 1555
MroXI GAANNNNTTC 1 cut(s) 1722
MslI CAYNNNNRTG 2 cut(s) 655, 2481
MspCI CTTAAG 1 cut(s) 1483
MspI CCGG 1 cut(s) 1556
MspR9I CCNGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
MssI GTTTAAAC 1 cut(s) 2907
MunI CAATTG 2 cut(s) 1014, 2881
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
MvnI CGCG 1 cut(s) 1118
MwoI GCNNNNNNNGC 8 cut(s) 35, 44, 101, 124, 212, 215, 907, 1253
NaeI GCCGGC 1 cut(s) 1557
NarI GGCGCC 1 cut(s) 713
NdeI CATATG 1 cut(s) 1434
NgoMIV GCCGGC 1 cut(s) 1555
NlaIV GGNNCC 3 cut(s) 714, 1849, 2009
NmeAIII GCCGAG 1 cut(s) 2144
NmuCI GTSAC 2 cut(s) 1424, 1683
NsbI TGCGCA 2 cut(s) 1027, 1596
NsiI ATGCAT 2 cut(s) 880, 2350
NspI RCATGY 6 cut(s) 23, 143, 1059, 1601, 1613, 2225
NspV TTCGAA 1 cut(s) 849
PagI TCATGA 2 cut(s) 1192, 1549
PaqCI CACCTGC 1 cut(s) 2460
PciI ACATGT 4 cut(s) 19, 1055, 1609, 2221
PciSI GCTCTTC 2 cut(s) 111, 150
PctI GAATGC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 1557
PdmI GAANNNNTTC 1 cut(s) 1722
PfoI TCCNGGA 3 cut(s) 190, 1672, 2268
PleI GAGTC 3 cut(s) 1120, 1856, 2306
PluTI GGCGCC 1 cut(s) 716
PmeI GTTTAAAC 1 cut(s) 2907
PpsI GAGTC 3 cut(s) 1120, 1856, 2306
PscI ACATGT 4 cut(s) 19, 1055, 1609, 2221
Psp124BI GAGCTC 1 cut(s) 2084
Psp6I CCWGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
PspFI CCCAGC 2 cut(s) 5, 1936
PspGI CCWGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
PspN4I GGNNCC 3 cut(s) 714, 1849, 2009
PspOMI GGGCCC 1 cut(s) 2007
PspPI GGNCC 6 cut(s) 527, 790, 1759, 1998, 2007, 2008
PstI CTGCAG 1 cut(s) 1739
PstNI CAGNNNCTG 3 cut(s) 692, 1421, 1709
PsuI RGATCY 7 cut(s) 67, 439, 548, 627, 976, 1676, 2811
PvuII CAGCTG 7 cut(s) 47, 74, 692, 1213, 1765, 1799, 1940
RsaI GTAC 7 cut(s) 366, 397, 643, 681, 1334, 2041, 2614
RsaNI GTAC 7 cut(s) 365, 396, 642, 680, 1333, 2040, 2613
RseI CAYNNNNRTG 2 cut(s) 655, 2481
SacI GAGCTC 1 cut(s) 2084
SacII CCGCGG 1 cut(s) 1119
SapI GCTCTTC 2 cut(s) 111, 150
Sau96I GGNCC 6 cut(s) 527, 790, 1759, 1998, 2007, 2008
SchI GAGTC 3 cut(s) 1121, 1856, 2306
ScrFI CCNGG 9 cut(s) 192, 1674, 1710, 1985, 2012, 2154, 2270, 2432, 2586
SduI GDGCHC 3 cut(s) 2011, 2084, 2417
SfaNI GCATC 8 cut(s) 865, 1302, 1370, 1583, 2357, 2559, 2682, 2752
SfcI CTRYAG 4 cut(s) 1376, 1735, 2137, 2568
SfoI GGCGCC 1 cut(s) 714
Sfr303I CCGCGG 1 cut(s) 1119
SfuI TTCGAA 1 cut(s) 849
SgrBI CCGCGG 1 cut(s) 1119
SinI GGWCC 4 cut(s) 527, 790, 1759, 1998
SmiMI CAYNNNNRTG 2 cut(s) 655, 2481
SmlI CTYRAG 2 cut(s) 1483, 2800
SmoI CTYRAG 2 cut(s) 1483, 2800
SpeI ACTAGT 1 cut(s) 1078
SspDI GGCGCC 1 cut(s) 712
SspI AATATT 1 cut(s) 1588
SstI GAGCTC 1 cut(s) 2084
StyD4I CCNGG 9 cut(s) 190, 1672, 1708, 1983, 2010, 2152, 2268, 2430, 2584
StyI CCWWGG 2 cut(s) 430, 1307
TaiI ACGT 1 cut(s) 297
TaqI TCGA 9 cut(s) 582, 849, 1084, 1504, 2553, 2578, 2605, 2757, 2838
TatI WGTACW 4 cut(s) 641, 679, 2039, 2612
TauI GCSGC 5 cut(s) 130, 212, 218, 998, 1796
TscAI CASTG 8 cut(s) 573, 644, 676, 1573, 1900, 1920, 2170, 2812
TseFI GTSAC 2 cut(s) 1424, 1683
Tsp45I GTSAC 2 cut(s) 1424, 1683
TspGWI ACGGA 1 cut(s) 2660
TspRI CASTG 8 cut(s) 573, 644, 676, 1573, 1900, 1920, 2170, 2812
Vha464I CTTAAG 1 cut(s) 1483
VpaK11BI GGWCC 4 cut(s) 527, 790, 1759, 1998
XapI RAATTY 6 cut(s) 853, 1956, 2278, 2558, 2663, 2863
XceI RCATGY 6 cut(s) 23, 143, 1059, 1601, 1613, 2225
XcmI CCANNNNNNNNNTGG 1 cut(s) 2008
XmaJI CCTAGG 2 cut(s) 430, 1307
XmiI GTMKAC 3 cut(s) 1281, 2148, 2178
XmnI GAANNNNTTC 1 cut(s) 1722
Zsp2I ATGCAT 2 cut(s) 880, 2350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.