Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009227

Physical Location & Seq

Genomic Coordinates Reverse (-)

21103928 .. 21105365

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTAGCTACAGTGCTCAAGTATCTTGCACGGTGCTTTGCTTCTGAAGAAGTGGAAACACAGCTTCAGATTTGTAATACCGCTGTTAAGCTTTTATTGGGGACAAAAGGGAATGGCCTGTTGACAATCAAAATGGTTTTAATCTACGTGTTGGAGCTGGCCCAATGCGACTTAAACTATGATGTTCGTGATCGAGCTCATTTCTTAAAGAAACTTCTTTCAACTTATCTAGATTCTCAAGGTTTGGAGGAGGAAACCAACTGTCCAGCCCAACATAAAGATAGTTCACGTCTCCTGGCAGAAATCTTGTTTGGAAAACAAAAGAAACCAGTGTCCCATGGGCCCATTGATCACTGGTTTTACCTTCCTGGCTCTTTATCGCAGATAGTACTTCATGCTGCTCCTGGGTATGAACCTCTCCCGAAGCCTTGTAGTTTGCGCAGTGATGGCCCCAGACTGAATGAATTTGGAGAGGCAGTCACTAATGGTGACCAATATGTTACAGACAGTGAGGACTCAGCTTCTGAATCTGTGGATGAGGAAGTTGCTTCTAGTTATAGTTCGCAACATTCTAATGTGGATTCAAGTGGCAGTGATGGCAGTGAAGAAGCTGGTTCTGTTAGTGAAGGTGATGATGATCCTCATCAGTTGATTCAGTTTTCAGATGAAAGAAAAAATGGAGCTTCTCAGTCTGCTTCTGATTTTGGGGAATTATTGTCAAATAGAGCTTTAGAATCATGGTTAGATGACCAACCTGGTTTTTCAAACCCAAATAATTCAGAACAAAGTCAAGTCCGTACATCTTCAGCAAGAATCTCCATCGGGGACTTCGGTGGTCAAGTTAGACGTAAAAGCTATCCACTCTTGGACCCTGTGAATGGAAACGGGTTAAAGGTTGACTATTCGTTTTCATCTGAGATATCAACTATCTCTCCTCGATTTATATGTATAGAAGTTTCCTTCAAGAACTGTTCAAAGGAGACCATGTCTGATGTAACTTTGGTTGACAAGGAGGCTGGCAAAGGCAAGGATTCTGTGGACCAAGCTTCGATTTCAGATGAAAGCTCTACGATACCTCAAAATAATGAGCCAAATCTGGTTTCTATAGAAGAAATCGCTTCTCTGGAACCTGGCCAGACAATGACAAGAAGCATCCAGGTGCGCTTCCATCACCACCTCTTACCTCTAAAACTGACCTTTATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

AP3B1_C Adaptin_N

Protein Analysis

403

Amino Acids

44.09

Weight (kDa)

4.77

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55480 AT3G55480
fragaria_vesca	FvH4_7g22680 FvH4_7g22680 FvH4_7g22680 FvH4_7g22680
malus_domestica	MD01G1135400.v1.1 MD07G1200100.v1.1
prunus_persica	Prupe.2G236800_v2.0.a1 Prupe.2G236800_v2.0.a1
pyrus_communis	pycom01g15610 pycom07g18690
rosa_chinensis	RchiOBHm_Chr1g0367761
rosa_laevigata	RLG00000027265
rosa_multiflora	Rmu_ssc0000395.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289240
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343600 Rh1BG305500 Rh1CG321100 Rh1DG337700
rosa_wichuraiana	Rw1G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	1132
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	3 cut(s)	50, 66, 789
AfaI	GTAC	2 cut(s)	390, 799
AfiI	CCNNNNNNNGG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	222, 585, 765, 964, 975
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 1084, 1116
Alw21I	GWGCWC	2 cut(s)	18, 199
Alw26I	GTCTC	2 cut(s)	296, 974
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	5 cut(s)	115, 159, 341, 448, 1132
ApaI	GGGCCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	441, 1164
AspS9I	GGNCC	6 cut(s)	160, 341, 342, 449, 868, 1039
AsuHPI	GGTGA	3 cut(s)	500, 641, 1163
AvaII	GGWCC	2 cut(s)	868, 1039
BaeGI	GKGCMC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	1134
BanII	GRGCYC	2 cut(s)	199, 345
Bbv12I	GWGCWC	2 cut(s)	18, 199
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	4 cut(s)	440, 590, 827, 1176
BciT130I	CCWGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	296, 974
BfaI	CTAG	2 cut(s)	230, 552
BfmI	CTRYAG	2 cut(s)	9, 1104
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
Bme18I	GGWCC	2 cut(s)	868, 1039
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	6 cut(s)	160, 341, 342, 449, 868, 1039
BmiI	GGNNCC	4 cut(s)	343, 451, 870, 1128
BmrFI	CCNGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
BmsI	GCATC	1 cut(s)	1161
BpuEI	CTTGAG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	2 cut(s)	636, 642
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	2 cut(s)	337, 404
BsaXI	ACNNNNNCTCC	6 cut(s)	462, 492, 916, 946, 971, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	329, 359
Bse8I	GATNNNNATC	2 cut(s)	636, 642
BseBI	CCWGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
BseDI	CCNNGG	2 cut(s)	337, 404
BseGI	GGATG	2 cut(s)	541, 1152
BseJI	GATNNNNATC	2 cut(s)	636, 642
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	3 cut(s)	531, 701, 906
BseNI	ACTGG	2 cut(s)	329, 359
BseRI	GAGGAG	2 cut(s)	263, 924
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	5 cut(s)	117, 161, 343, 450, 1134
BsiHKAI	GWGCWC	2 cut(s)	18, 199
BslFI	GGGAC	3 cut(s)	115, 319, 839
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	296, 974
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	3 cut(s)	115, 319, 839
BsnI	GGCC	5 cut(s)	117, 161, 343, 450, 1134
Bso31I	GGTCTC	1 cut(s)	974
Bsp120I	GGGCCC	1 cut(s)	341
Bsp1286I	GDGCHC	3 cut(s)	18, 199, 345
Bsp143I	GATC	3 cut(s)	190, 349, 637
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	5 cut(s)	117, 161, 343, 450, 1134
BspCNI	CTCAG	3 cut(s)	530, 700, 907
BspLI	GGNNCC	4 cut(s)	343, 451, 870, 1128
BspPI	GGATC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	974
BsrI	ACTGG	2 cut(s)	329, 359
BssECI	CCNNGG	2 cut(s)	337, 404
BssMI	GATC	3 cut(s)	190, 349, 637
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
Bst4CI	ACNGT	5 cut(s)	13, 33, 263, 509, 971
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	159, 1018
BstDEI	CTNAG	3 cut(s)	517, 687, 915
BstDSI	CCRYGG	1 cut(s)	337
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	541, 1152
BstHHI	GCGC	2 cut(s)	441, 1164
BstKTI	GATC	3 cut(s)	193, 352, 640
BstMAI	GTCTC	2 cut(s)	296, 974
BstMBI	GATC	3 cut(s)	190, 349, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 597
BstNI	CCWGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
BstSFI	CTRYAG	2 cut(s)	9, 1104
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	385
BsuRI	GGCC	5 cut(s)	117, 161, 343, 450, 1134
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	541, 1152
BtsI	GCAGTG	3 cut(s)	448, 598, 607
BtsIMutI	CAGTG	7 cut(s)	18, 336, 352, 448, 514, 598, 607
Cac8I	GCNNGC	2 cut(s)	159, 1018
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	2 cut(s)	441, 1164
Cfr13I	GGNCC	6 cut(s)	160, 341, 342, 449, 868, 1039
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	389, 798
CviAII	CATG	4 cut(s)	338, 395, 738, 985
CviQI	GTAC	2 cut(s)	389, 798
DdeI	CTNAG	3 cut(s)	517, 687, 915
DpnI	GATC	3 cut(s)	192, 351, 639
DpnII	GATC	3 cut(s)	190, 349, 637
EaeI	YGGCCR	1 cut(s)	1132
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	199, 345
Eco31I	GGTCTC	1 cut(s)	974
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	868, 1039
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	3 cut(s)	50, 66, 789
Eco91I	GGTNACC	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
EcoRV	GATATC	1 cut(s)	921
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	199, 345
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	4 cut(s)	341, 398, 741, 988
FaqI	GGGAC	3 cut(s)	115, 319, 839
FatI	CATG	4 cut(s)	337, 394, 737, 984
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	548, 1139
FriOI	GRGCYC	2 cut(s)	199, 345
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	230, 552
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	2 cut(s)	440, 1163
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	5 cut(s)	117, 161, 343, 450, 1134
HhaI	GCGC	2 cut(s)	441, 1164
Hin1II	CATG	4 cut(s)	341, 398, 741, 988
Hin6I	GCGC	2 cut(s)	439, 1162
HinP1I	GCGC	2 cut(s)	439, 1162
HincII	GTYRAC	3 cut(s)	123, 898, 1006
HindII	GTYRAC	3 cut(s)	123, 898, 1006
HindIII	AAGCTT	2 cut(s)	89, 1044
HinfI	GANTC	8 cut(s)	233, 515, 527, 581, 652, 734, 813, 1031
HphI	GGTGA	3 cut(s)	500, 641, 1163
Hpy166II	GTNNAC	5 cut(s)	123, 287, 898, 1006, 1039
Hpy188I	TCNGA	9 cut(s)	46, 69, 526, 664, 700, 781, 916, 991, 1057
Hpy188III	TCNNGA	5 cut(s)	188, 230, 421, 964, 1124
Hpy8I	GTNNAC	5 cut(s)	123, 287, 898, 1006, 1039
HpyAV	CCTTC	3 cut(s)	374, 620, 970
HpyCH4III	ACNGT	5 cut(s)	13, 33, 263, 509, 971
HpyCH4IV	ACGT	3 cut(s)	147, 289, 847
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 597
HpyF3I	CTNAG	3 cut(s)	517, 687, 915
HpySE526I	ACGT	3 cut(s)	147, 289, 847
Hsp92II	CATG	4 cut(s)	341, 398, 741, 988
HspAI	GCGC	2 cut(s)	439, 1162
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	190, 349, 637
LmnI	GCTCC	3 cut(s)	154, 406, 680
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	1161
MabI	ACCWGGT	1 cut(s)	754
MaeI	CTAG	2 cut(s)	230, 552
MaeII	ACGT	3 cut(s)	147, 289, 847
MaeIII	GTNAC	4 cut(s)	478, 488, 499, 994
MalI	GATC	3 cut(s)	192, 351, 639
MboI	GATC	3 cut(s)	190, 349, 637
MboII	GAAGA	4 cut(s)	59, 617, 795, 1121
MhlI	GDGCHC	3 cut(s)	18, 199, 345
MlsI	TGGCCA	1 cut(s)	1134
MluCI	AATT	3 cut(s)	464, 710, 775
MluNI	TGGCCA	1 cut(s)	1134
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	132
Mox20I	TGGCCA	1 cut(s)	1134
MscI	TGGCCA	1 cut(s)	1134
MseI	TTAA	5 cut(s)	87, 140, 173, 206, 890
MslI	CAYNNNNRTG	2 cut(s)	573, 1157
Msp20I	TGGCCA	1 cut(s)	1134
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
MvaI	CCWGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
MwoI	GCNNNNNNNGC	2 cut(s)	447, 597
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	3 cut(s)	190, 349, 637
NlaIII	CATG	4 cut(s)	341, 398, 741, 988
NlaIV	GGNNCC	4 cut(s)	343, 451, 870, 1128
NmuCI	GTSAC	2 cut(s)	478, 488
NsbI	TGCGCA	1 cut(s)	440
PfeI	GAWTC	7 cut(s)	233, 527, 581, 652, 734, 813, 1031
PflFI	GACNNNGTC	1 cut(s)	985
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
PspN4I	GGNNCC	4 cut(s)	343, 451, 870, 1128
PspOMI	GGGCCC	1 cut(s)	341
PspPI	GGNCC	6 cut(s)	160, 341, 342, 449, 868, 1039
PstNI	CAGNNNCTG	1 cut(s)	524
PsyI	GACNNNGTC	1 cut(s)	985
RsaI	GTAC	2 cut(s)	390, 799
RsaNI	GTAC	2 cut(s)	389, 798
RseI	CAYNNNNRTG	2 cut(s)	573, 1157
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	87, 140, 173, 206, 890
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	190, 349, 637
Sau96I	GGNCC	6 cut(s)	160, 341, 342, 449, 868, 1039
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	6 cut(s)	296, 369, 405, 756, 1131, 1157
SduI	GDGCHC	3 cut(s)	18, 199, 345
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	1161
SfcI	CTRYAG	2 cut(s)	9, 1104
SinI	GGWCC	2 cut(s)	868, 1039
SmiMI	CAYNNNNRTG	2 cut(s)	573, 1157
SmlI	CTYRAG	2 cut(s)	17, 237
SmoI	CTYRAG	2 cut(s)	17, 237
Sse9I	AATT	3 cut(s)	464, 710, 775
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	230, 552
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	6 cut(s)	294, 367, 403, 754, 1129, 1155
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	5 cut(s)	13, 33, 263, 509, 971
TaiI	ACGT	3 cut(s)	150, 292, 850
TaqI	TCGA	3 cut(s)	193, 937, 1049
TasI	AATT	3 cut(s)	464, 710, 775
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	7 cut(s)	233, 527, 581, 652, 734, 813, 1031
Tru1I	TTAA	5 cut(s)	87, 140, 173, 206, 890
Tru9I	TTAA	5 cut(s)	87, 140, 173, 206, 890
TscAI	CASTG	7 cut(s)	18, 336, 359, 448, 514, 598, 607
TseFI	GTSAC	2 cut(s)	478, 488
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	2 cut(s)	478, 488
TspDTI	ATGAA	6 cut(s)	383, 426, 477, 681, 900, 1074
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	7 cut(s)	18, 336, 359, 448, 514, 598, 607
Tth111I	GACNNNGTC	1 cut(s)	985
VpaK11BI	GGWCC	2 cut(s)	868, 1039
XapI	RAATTY	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	229
XspI	CTAG	2 cut(s)	230, 552
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.