Belongs to the adaptor complexes large subunit family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55480 AT3G55480 |
| fragaria_vesca | FvH4_7g22680 FvH4_7g22680 FvH4_7g22680 FvH4_7g22680 |
| malus_domestica | MD01G1135400.v1.1 MD07G1200100.v1.1 |
| prunus_persica | Prupe.2G236800_v2.0.a1 Prupe.2G236800_v2.0.a1 |
| pyrus_communis | pycom01g15610 pycom07g18690 |
| rosa_chinensis | RchiOBHm_Chr1g0367761 |
| rosa_laevigata | RLG00000027265 |
| rosa_multiflora | Rmu_ssc0000395.1_g000020 |
| rosa_roxburghii | Rroxscaffold_4G00289240 |
| rosa_rugosa | Rorug01G0336400 |
| rosa_samantha | Rh1AG343600 Rh1BG305500 Rh1CG321100 Rh1DG337700 |
| rosa_wichuraiana | Rw1G030580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 105, 198 |
| AccB1I | GGYRCC | 1 cut(s) | 1615 |
| AccI | GTMKAC | 2 cut(s) | 47, 524 |
| AccII | CGCG | 1 cut(s) | 2456 |
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AciI | CCGC | 1 cut(s) | 24 |
| AcoI | YGGCCR | 1 cut(s) | 1845 |
| AcuI | CTGAAG | 2 cut(s) | 1713, 2475 |
| AcyI | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| AfaI | GTAC | 7 cut(s) | 272, 1018, 1056, 1074, 1701, 2076, 2119 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 14, 390, 2564, 2734, 2930 |
| AflII | CTTAAG | 1 cut(s) | 1858 |
| AjnI | CCWGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 531, 563 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 986, 1018 |
| Alw21I | GWGCWC | 3 cut(s) | 1405, 2950, 3233 |
| Alw26I | GTCTC | 7 cut(s) | 202, 636, 1736, 2212, 2718, 2991, 3060 |
| Alw44I | GTGCAC | 1 cut(s) | 1401 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 244, 1067, 2210, 2720 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| AoxI | GGCC | 4 cut(s) | 905, 1845, 2134, 2921 |
| ApaLI | GTGCAC | 1 cut(s) | 1401 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 116, 148, 1349, 1381 |
| AseI | ATTAAT | 1 cut(s) | 321 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 806, 2103 |
| AspLEI | GCGC | 6 cut(s) | 20, 376, 513, 723, 2456, 2458 |
| AspS9I | GGNCC | 2 cut(s) | 905, 2554 |
| AsuHPI | GGTGA | 6 cut(s) | 373, 1014, 1080, 1802, 2849, 2872 |
| AsuII | TTCGAA | 1 cut(s) | 469 |
| AvaII | GGWCC | 1 cut(s) | 2554 |
| AxyI | CCTNAGG | 1 cut(s) | 213 |
| BaeGI | GKGCMC | 1 cut(s) | 1405 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1691, 1724 |
| BalI | TGGCCA | 1 cut(s) | 1847 |
| BamHI | GGATCC | 3 cut(s) | 346, 393, 711 |
| BanI | GGYRCC | 1 cut(s) | 1615 |
| BanII | GRGCYC | 2 cut(s) | 2031, 2950 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 248, 280, 2934, 2966 |
| BauI | CACGAG | 2 cut(s) | 924, 1626 |
| BbsI | GAAGAC | 6 cut(s) | 105, 840, 848, 1233, 3090, 3316 |
| Bbv12I | GWGCWC | 3 cut(s) | 1405, 2950, 3233 |
| BccI | CCATC | 4 cut(s) | 1639, 2126, 2276, 2862 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1185, 1219 |
| BciT130I | CCWGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| BciVI | GTATCC | 1 cut(s) | 2927 |
| BclI | TGATCA | 3 cut(s) | 2035, 2194, 3034 |
| BcoDI | GTCTC | 7 cut(s) | 202, 636, 1736, 2212, 2718, 2991, 3060 |
| BfaI | CTAG | 7 cut(s) | 260, 341, 447, 1058, 2238, 2783, 3050 |
| BfmI | CTRYAG | 6 cut(s) | 649, 1299, 1620, 1767, 2790, 3261 |
| BfoI | RGCGCY | 1 cut(s) | 377 |
| BfrI | CTTAAG | 1 cut(s) | 1858 |
| BfuI | GTATCC | 1 cut(s) | 2927 |
| BglII | AGATCT | 1 cut(s) | 2486 |
| BlpI | GCTNAGC | 1 cut(s) | 3128 |
| BmcAI | AGTACT | 2 cut(s) | 1701, 2076 |
| Bme1390I | CCNGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| Bme18I | GGWCC | 1 cut(s) | 2554 |
| BmgT120I | GGNCC | 2 cut(s) | 905, 2554 |
| BmiI | GGNNCC | 5 cut(s) | 348, 395, 713, 1617, 2556 |
| BmrFI | CCNGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| BmrI | ACTGGG | 2 cut(s) | 1485, 1557 |
| BmsI | GCATC | 5 cut(s) | 117, 784, 2956, 3114, 3178 |
| BmuI | ACTGGG | 2 cut(s) | 1485, 1557 |
| BpiI | GAAGAC | 6 cut(s) | 105, 840, 848, 1233, 3090, 3316 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1646, 1678 |
| BpmI | CTGGAG | 2 cut(s) | 2073, 2742 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3128 |
| Bpu14I | TTCGAA | 1 cut(s) | 469 |
| BpuEI | CTTGAG | 3 cut(s) | 1688, 1908, 3247 |
| Bsa29I | ATCGAT | 1 cut(s) | 317 |
| BsaBI | GATNNNNATC | 2 cut(s) | 710, 1254 |
| BsaHI | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| BsaI | GGTCTC | 1 cut(s) | 2718 |
| BsaJI | CCNNGG | 5 cut(s) | 183, 184, 384, 1682, 2090 |
| BsaWI | WCCGGW | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2511, 2541 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 14, 390, 2564, 2734, 2930 |
| Bse118I | RCCGGY | 2 cut(s) | 530, 3166 |
| Bse1I | ACTGG | 7 cut(s) | 249, 1082, 1290, 1480, 1563, 1848, 3291 |
| Bse21I | CCTNAGG | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 2 cut(s) | 2350, 3139 |
| Bse8I | GATNNNNATC | 2 cut(s) | 710, 1254 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| BseCI | ATCGAT | 1 cut(s) | 317 |
| BseDI | CCNNGG | 5 cut(s) | 183, 184, 384, 1682, 2090 |
| BseGI | GGATG | 8 cut(s) | 1000, 1650, 1692, 2227, 2287, 2341, 2838, 2965 |
| BseJI | GATNNNNATC | 2 cut(s) | 710, 1254 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 14, 390, 2564, 2734, 2930 |
| BseMI | GCAATG | 2 cut(s) | 2350, 3139 |
| BseMII | CTCAG | 8 cut(s) | 227, 251, 302, 812, 2016, 2202, 2592, 3249 |
| BseNI | ACTGG | 7 cut(s) | 249, 1082, 1290, 1480, 1563, 1848, 3291 |
| BsePI | GCGCGC | 1 cut(s) | 2454 |
| BseRI | GAGGAG | 4 cut(s) | 105, 110, 2240, 2610 |
| BseSI | GKGCMC | 1 cut(s) | 1405 |
| BseYI | CCCAGC | 1 cut(s) | 389 |
| BsgI | GTGCAG | 2 cut(s) | 770, 1068 |
| Bsh1236I | CGCG | 1 cut(s) | 2456 |
| BshFI | GGCC | 4 cut(s) | 907, 1847, 2136, 2923 |
| BshNI | GGYRCC | 1 cut(s) | 1615 |
| BshVI | ATCGAT | 1 cut(s) | 317 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1405, 2950, 3233 |
| BsiSI | CCGG | 4 cut(s) | 61, 397, 531, 3167 |
| BslFI | GGGAC | 1 cut(s) | 3224 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 14, 390, 2564, 2734, 2930 |
| BsmAI | GTCTC | 7 cut(s) | 202, 636, 1736, 2212, 2718, 2991, 3060 |
| BsmBI | CGTCTC | 1 cut(s) | 202 |
| BsmFI | GGGAC | 1 cut(s) | 3224 |
| BsmI | GAATGC | 1 cut(s) | 3014 |
| BsnI | GGCC | 4 cut(s) | 907, 1847, 2136, 2923 |
| Bso31I | GGTCTC | 1 cut(s) | 2718 |
| Bsp119I | TTCGAA | 1 cut(s) | 469 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1405, 2031, 2950, 3233 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 1072 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3128 |
| Bsp19I | CCATGG | 1 cut(s) | 384 |
| BspACI | CCGC | 1 cut(s) | 24 |
| BspANI | GGCC | 4 cut(s) | 907, 1847, 2136, 2923 |
| BspCNI | CTCAG | 8 cut(s) | 226, 250, 301, 811, 2017, 2203, 2593, 3248 |
| BspDI | ATCGAT | 1 cut(s) | 317 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspFNI | CGCG | 1 cut(s) | 2456 |
| BspHI | TCATGA | 2 cut(s) | 859, 1567 |
| BspLI | GGNNCC | 5 cut(s) | 348, 395, 713, 1617, 2556 |
| BspMAI | CTGCAG | 1 cut(s) | 1624 |
| BspQI | GCTCTTC | 2 cut(s) | 1214, 2955 |
| BspT104I | TTCGAA | 1 cut(s) | 469 |
| BspT107I | GGYRCC | 1 cut(s) | 1615 |
| BspTI | CTTAAG | 1 cut(s) | 1858 |
| BspTNI | GGTCTC | 1 cut(s) | 2718 |
| BsrDI | GCAATG | 2 cut(s) | 2350, 3139 |
| BsrFI | RCCGGY | 2 cut(s) | 530, 3166 |
| BsrGI | TGTACA | 1 cut(s) | 1072 |
| BsrI | ACTGG | 7 cut(s) | 249, 1082, 1290, 1480, 1563, 1848, 3291 |
| BssAI | RCCGGY | 2 cut(s) | 530, 3166 |
| BssECI | CCNNGG | 5 cut(s) | 183, 184, 384, 1682, 2090 |
| BssHII | GCGCGC | 1 cut(s) | 2454 |
| BssNAI | GTATAC | 1 cut(s) | 525 |
| BssNI | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| BssSI | CACGAG | 2 cut(s) | 924, 1626 |
| BssT1I | CCWWGG | 2 cut(s) | 384, 1682 |
| Bst1107I | GTATAC | 1 cut(s) | 525 |
| Bst2BI | CACGAG | 2 cut(s) | 924, 1626 |
| Bst2UI | CCWGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| Bst6I | CTCTTC | 7 cut(s) | 534, 613, 1214, 1728, 2109, 2790, 2955 |
| BstACI | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| BstAFI | CTTAAG | 1 cut(s) | 1858 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1628 |
| BstAUI | TGTACA | 1 cut(s) | 1072 |
| BstBI | TTCGAA | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 4 cut(s) | 381, 1620, 2456, 3221 |
| BstDSI | CCRYGG | 1 cut(s) | 384 |
| BstF5I | GGATG | 8 cut(s) | 1000, 1650, 1692, 2227, 2287, 2341, 2838, 2965 |
| BstFNI | CGCG | 1 cut(s) | 2456 |
| BstH2I | RGCGCY | 1 cut(s) | 377 |
| BstHHI | GCGC | 6 cut(s) | 20, 376, 513, 723, 2456, 2458 |
| BstMAI | GTCTC | 7 cut(s) | 202, 636, 1736, 2212, 2718, 2991, 3060 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 179, 380, 485, 596, 599, 1295, 1628 |
| BstNI | CCWGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| BstNSI | RCATGY | 3 cut(s) | 407, 1434, 3166 |
| BstSCI | CCNGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| BstSFI | CTRYAG | 6 cut(s) | 649, 1299, 1620, 1767, 2790, 3261 |
| BstSLI | GKGCMC | 1 cut(s) | 1405 |
| BstUI | CGCG | 1 cut(s) | 2456 |
| BstV2I | GAAGAC | 6 cut(s) | 105, 840, 848, 1233, 3090, 3316 |
| BstX2I | RGATCY | 9 cut(s) | 337, 346, 393, 451, 711, 1351, 1555, 2486, 3046 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1032 |
| BstYI | RGATCY | 9 cut(s) | 337, 346, 393, 451, 711, 1351, 1555, 2486, 3046 |
| BstZ17I | GTATAC | 1 cut(s) | 525 |
| Bsu15I | ATCGAT | 1 cut(s) | 317 |
| Bsu36I | CCTNAGG | 1 cut(s) | 213 |
| BsuI | GTATCC | 1 cut(s) | 2927 |
| BsuRI | GGCC | 4 cut(s) | 907, 1847, 2136, 2923 |
| BsuTUI | ATCGAT | 1 cut(s) | 317 |
| BtgI | CCRYGG | 1 cut(s) | 384 |
| BtgZI | GCGATG | 3 cut(s) | 94, 163, 1027 |
| BtsCI | GGATG | 8 cut(s) | 1000, 1650, 1692, 2227, 2287, 2341, 2838, 2965 |
| BtsI | GCAGTG | 3 cut(s) | 847, 2272, 2278 |
| BtsIMutI | CAGTG | 8 cut(s) | 69, 242, 847, 1075, 2179, 2272, 2278, 3284 |
| Cac8I | GCNNGC | 4 cut(s) | 381, 1620, 2456, 3221 |
| CaiI | CAGNNNCTG | 4 cut(s) | 244, 1067, 2210, 2720 |
| CciI | TCATGA | 2 cut(s) | 859, 1567 |
| CfoI | GCGC | 6 cut(s) | 20, 376, 513, 723, 2456, 2458 |
| Cfr10I | RCCGGY | 2 cut(s) | 530, 3166 |
| Cfr13I | GGNCC | 2 cut(s) | 905, 2554 |
| ClaI | ATCGAT | 1 cut(s) | 317 |
| CseI | GACGC | 4 cut(s) | 33, 83, 284, 2763 |
| Csp6I | GTAC | 7 cut(s) | 271, 1017, 1055, 1073, 1700, 2075, 2118 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1143, 1178 |
| CviQI | GTAC | 7 cut(s) | 271, 1017, 1055, 1073, 1700, 2075, 2118 |
| DraI | TTTAAA | 1 cut(s) | 1602 |
| EaeI | YGGCCR | 1 cut(s) | 1845 |
| Eam1104I | CTCTTC | 7 cut(s) | 534, 613, 1214, 1728, 2109, 2790, 2955 |
| EarI | CTCTTC | 7 cut(s) | 534, 613, 1214, 1728, 2109, 2790, 2955 |
| Ecl136II | GAGCTC | 1 cut(s) | 2948 |
| Eco130I | CCWWGG | 2 cut(s) | 384, 1682 |
| Eco147I | AGGCCT | 1 cut(s) | 2923 |
| Eco24I | GRGCYC | 2 cut(s) | 2031, 2950 |
| Eco31I | GGTCTC | 1 cut(s) | 2718 |
| Eco32I | GATATC | 1 cut(s) | 2760 |
| Eco47I | GGWCC | 1 cut(s) | 2554 |
| Eco53kI | GAGCTC | 1 cut(s) | 2948 |
| Eco57I | CTGAAG | 2 cut(s) | 1713, 2475 |
| Eco81I | CCTNAGG | 1 cut(s) | 213 |
| EcoICRI | GAGCTC | 1 cut(s) | 2948 |
| EcoRI | GAATTC | 4 cut(s) | 552, 787, 956, 2230 |
| EcoRII | CCWGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| EcoRV | GATATC | 1 cut(s) | 2760 |
| EcoT14I | CCWWGG | 2 cut(s) | 384, 1682 |
| EcoT22I | ATGCAT | 1 cut(s) | 2745 |
| EcoT38I | GRGCYC | 2 cut(s) | 2031, 2950 |
| ErhI | CCWWGG | 2 cut(s) | 384, 1682 |
| Esp3I | CGTCTC | 1 cut(s) | 202 |
| FaqI | GGGAC | 1 cut(s) | 3224 |
| FauNDI | CATATG | 2 cut(s) | 1238, 2182 |
| FbaI | TGATCA | 3 cut(s) | 2035, 2194, 3034 |
| FblI | GTMKAC | 2 cut(s) | 47, 524 |
| FokI | GGATG | 8 cut(s) | 1007, 1657, 1699, 2234, 2294, 2348, 2825, 2972 |
| FriOI | GRGCYC | 2 cut(s) | 2031, 2950 |
| FspBI | CTAG | 7 cut(s) | 260, 341, 447, 1058, 2238, 2783, 3050 |
| GlaI | GCGC | 6 cut(s) | 19, 375, 512, 722, 2455, 2457 |
| GsaI | CCCAGC | 1 cut(s) | 393 |
| GsuI | CTGGAG | 2 cut(s) | 2073, 2742 |
| HaeII | RGCGCY | 1 cut(s) | 377 |
| HaeIII | GGCC | 4 cut(s) | 907, 1847, 2136, 2923 |
| HapII | CCGG | 4 cut(s) | 61, 397, 531, 3167 |
| HgaI | GACGC | 4 cut(s) | 33, 83, 284, 2763 |
| HhaI | GCGC | 6 cut(s) | 20, 376, 513, 723, 2456, 2458 |
| Hin1I | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| Hin6I | GCGC | 6 cut(s) | 18, 374, 511, 721, 2454, 2456 |
| HinP1I | GCGC | 6 cut(s) | 18, 374, 511, 721, 2454, 2456 |
| HincII | GTYRAC | 6 cut(s) | 48, 1692, 1809, 2584, 2692, 3160 |
| HindII | GTYRAC | 6 cut(s) | 48, 1692, 1809, 2584, 2692, 3160 |
| HindIII | AAGCTT | 2 cut(s) | 1748, 2903 |
| HpaI | GTTAAC | 1 cut(s) | 1692 |
| HpaII | CCGG | 4 cut(s) | 61, 397, 531, 3167 |
| HphI | GGTGA | 6 cut(s) | 373, 1014, 1080, 1802, 2849, 2872 |
| Hpy99I | CGWCG | 3 cut(s) | 49, 92, 197 |
| HpyCH4IV | ACGT | 5 cut(s) | 102, 195, 228, 678, 3208 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 179, 380, 485, 596, 599, 1295, 1628 |
| HpySE526I | ACGT | 5 cut(s) | 102, 195, 228, 678, 3208 |
| Hsp92I | GRCGYC | 4 cut(s) | 44, 75, 102, 195 |
| HspAI | GCGC | 6 cut(s) | 18, 374, 511, 721, 2454, 2456 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| Ksp22I | TGATCA | 3 cut(s) | 2035, 2194, 3034 |
| KspAI | GTTAAC | 1 cut(s) | 1692 |
| LguI | GCTCTTC | 2 cut(s) | 1214, 2955 |
| LmnI | GCTCC | 5 cut(s) | 118, 587, 2092, 2366, 2756 |
| LweI | GCATC | 5 cut(s) | 117, 784, 2956, 3114, 3178 |
| MaeI | CTAG | 7 cut(s) | 260, 341, 447, 1058, 2238, 2783, 3050 |
| MaeII | ACGT | 5 cut(s) | 102, 195, 228, 678, 3208 |
| MfeI | CAATTG | 1 cut(s) | 1389 |
| MflI | RGATCY | 9 cut(s) | 337, 346, 393, 451, 711, 1351, 1555, 2486, 3046 |
| MhlI | GDGCHC | 4 cut(s) | 1405, 2031, 2950, 3233 |
| MlsI | TGGCCA | 1 cut(s) | 1847 |
| MluNI | TGGCCA | 1 cut(s) | 1847 |
| MlyI | GAGTC | 6 cut(s) | 131, 229, 872, 2172, 2222, 2993 |
| MmeI | TCCRAC | 4 cut(s) | 565, 644, 1719, 2409 |
| Mox20I | TGGCCA | 1 cut(s) | 1847 |
| Mph1103I | ATGCAT | 1 cut(s) | 2745 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MroXI | GAANNNNTTC | 2 cut(s) | 806, 2103 |
| MscI | TGGCCA | 1 cut(s) | 1847 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1030, 2259 |
| Msp20I | TGGCCA | 1 cut(s) | 1847 |
| MspA1I | CMGCKG | 1 cut(s) | 1064 |
| MspCI | CTTAAG | 1 cut(s) | 1858 |
| MspI | CCGG | 4 cut(s) | 61, 397, 531, 3167 |
| MspR9I | CCNGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| MunI | CAATTG | 1 cut(s) | 1389 |
| Mva1269I | GAATGC | 1 cut(s) | 3014 |
| MvaI | CCWGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| MvnI | CGCG | 1 cut(s) | 2456 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 179, 380, 485, 596, 599, 1295, 1628 |
| NcoI | CCATGG | 1 cut(s) | 384 |
| NdeI | CATATG | 2 cut(s) | 1238, 2182 |
| NlaIV | GGNNCC | 5 cut(s) | 348, 395, 713, 1617, 2556 |
| NmuCI | GTSAC | 9 cut(s) | 240, 842, 1086, 1853, 1874, 1953, 2164, 2174, 2827 |
| NsiI | ATGCAT | 1 cut(s) | 2745 |
| NspI | RCATGY | 3 cut(s) | 407, 1434, 3166 |
| NspV | TTCGAA | 1 cut(s) | 469 |
| PagI | TCATGA | 2 cut(s) | 859, 1567 |
| PasI | CCCWGGG | 1 cut(s) | 184 |
| PauI | GCGCGC | 1 cut(s) | 2454 |
| PceI | AGGCCT | 1 cut(s) | 2923 |
| PciSI | GCTCTTC | 2 cut(s) | 1214, 2955 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 93, 810 |
| PctI | GAATGC | 1 cut(s) | 3014 |
| PdmI | GAANNNNTTC | 2 cut(s) | 806, 2103 |
| PflFI | GACNNNGTC | 1 cut(s) | 238 |
| PleI | GAGTC | 6 cut(s) | 131, 229, 871, 2171, 2221, 2992 |
| PpsI | GAGTC | 6 cut(s) | 131, 229, 871, 2171, 2221, 2992 |
| PshBI | ATTAAT | 1 cut(s) | 321 |
| Psp124BI | GAGCTC | 1 cut(s) | 2950 |
| Psp6I | CCWGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| PspFI | CCCAGC | 1 cut(s) | 389 |
| PspGI | CCWGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| PspN4I | GGNNCC | 5 cut(s) | 348, 395, 713, 1617, 2556 |
| PspPI | GGNCC | 2 cut(s) | 905, 2554 |
| PstI | CTGCAG | 1 cut(s) | 1624 |
| PstNI | CAGNNNCTG | 4 cut(s) | 244, 1067, 2210, 2720 |
| PsuI | RGATCY | 9 cut(s) | 337, 346, 393, 451, 711, 1351, 1555, 2486, 3046 |
| PsyI | GACNNNGTC | 1 cut(s) | 238 |
| PteI | GCGCGC | 1 cut(s) | 2454 |
| PvuII | CAGCTG | 1 cut(s) | 1064 |
| RsaI | GTAC | 7 cut(s) | 272, 1018, 1056, 1074, 1701, 2076, 2119 |
| RsaNI | GTAC | 7 cut(s) | 271, 1017, 1055, 1073, 1700, 2075, 2118 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1030, 2259 |
| SacI | GAGCTC | 1 cut(s) | 2950 |
| SalI | GTCGAC | 1 cut(s) | 46 |
| SapI | GCTCTTC | 2 cut(s) | 1214, 2955 |
| Sau96I | GGNCC | 2 cut(s) | 905, 2554 |
| ScaI | AGTACT | 2 cut(s) | 1701, 2076 |
| SchI | GAGTC | 6 cut(s) | 131, 229, 872, 2172, 2222, 2993 |
| ScrFI | CCNGG | 4 cut(s) | 185, 2055, 2091, 2442 |
| SduI | GDGCHC | 4 cut(s) | 1405, 2031, 2950, 3233 |
| SfaNI | GCATC | 5 cut(s) | 117, 784, 2956, 3114, 3178 |
| SfcI | CTRYAG | 6 cut(s) | 649, 1299, 1620, 1767, 2790, 3261 |
| SfuI | TTCGAA | 1 cut(s) | 469 |
| SinI | GGWCC | 1 cut(s) | 2554 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1030, 2259 |
| SmlI | CTYRAG | 4 cut(s) | 1703, 1858, 1923, 3226 |
| SmoI | CTYRAG | 4 cut(s) | 1703, 1858, 1923, 3226 |
| SseBI | AGGCCT | 1 cut(s) | 2923 |
| SsiI | CCGC | 1 cut(s) | 24 |
| SspI | AATATT | 2 cut(s) | 917, 1510 |
| SspMI | CTAG | 7 cut(s) | 260, 341, 447, 1058, 2238, 2783, 3050 |
| SstI | GAGCTC | 1 cut(s) | 2950 |
| StuI | AGGCCT | 1 cut(s) | 2923 |
| StyD4I | CCNGG | 4 cut(s) | 183, 2053, 2089, 2440 |
| StyI | CCWWGG | 2 cut(s) | 384, 1682 |
| TaiI | ACGT | 5 cut(s) | 105, 198, 231, 681, 3211 |
| TaqI | TCGA | 9 cut(s) | 47, 123, 135, 192, 317, 469, 889, 2139, 2450 |
| TaqII | GACCGA | 1 cut(s) | 1794 |
| TatI | WGTACW | 5 cut(s) | 1054, 1072, 1699, 2074, 2117 |
| TscAI | CASTG | 8 cut(s) | 76, 249, 847, 1082, 2179, 2272, 2278, 3291 |
| TseFI | GTSAC | 9 cut(s) | 240, 842, 1086, 1853, 1874, 1953, 2164, 2174, 2827 |
| Tsp45I | GTSAC | 9 cut(s) | 240, 842, 1086, 1853, 1874, 1953, 2164, 2174, 2827 |
| TspGWI | ACGGA | 3 cut(s) | 444, 814, 2348 |
| TspRI | CASTG | 8 cut(s) | 76, 249, 847, 1082, 2179, 2272, 2278, 3291 |
| Tth111I | GACNNNGTC | 1 cut(s) | 238 |
| Vha464I | CTTAAG | 1 cut(s) | 1858 |
| VneI | GTGCAC | 1 cut(s) | 1401 |
| VpaK11BI | GGWCC | 1 cut(s) | 2554 |
| VspI | ATTAAT | 1 cut(s) | 321 |
| XbaI | TCTAGA | 1 cut(s) | 3049 |
| XceI | RCATGY | 3 cut(s) | 407, 1434, 3166 |
| XmiI | GTMKAC | 2 cut(s) | 47, 524 |
| XmnI | GAANNNNTTC | 2 cut(s) | 806, 2103 |
| XspI | CTAG | 7 cut(s) | 260, 341, 447, 1058, 2238, 2783, 3050 |
| ZraI | GACGTC | 2 cut(s) | 103, 196 |
| ZrmI | AGTACT | 2 cut(s) | 1701, 2076 |
| Zsp2I | ATGCAT | 1 cut(s) | 2745 |