Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009227

Physical Location & Seq

Genomic Coordinates Forward (+)

9909764 .. 9912013

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTGGGATCCGGCTGCATGTTATTGCGCCTTTGGTTGTGGTTGCTGTGGGGAAATCTGCTAGAGATCCGTCTGTGTATGTTCGAAAATGTGCTGCCAATGCACTTCCTAAGCTGAATGATTTGCGCCTTGATGAGTATACTGCCGGTATTGAAGAGGTTATTGGAATACTGTTGAATGACAATTCCCCTTGTGTTGTTGGAGCTGCTGCTGCTGCCTTCTCTTCAATTTGTCCAACTAATTTGTCTCTGATCGGAAGAAACTATAGAAGGTTATGCGAGATTCTCCCTGACATTGAAGAATGGGGTCAAATAGTTTTGATTGGGATCCTTTTGCGCTATGTAATTGCAAGGCATGGGTTTGTGCAGGAATCCATTATGGCTTCTTTGCATCATACAGAGAATTCTAAATCTCAGAACGATTTCTGTGACACCAATTCTGTATTAGAAGACAATGGCGACATGAGTGGTCTTCATGAGTCTGAATTAGCAAATGTTGTCTTTCGATGTTATATAGAAGGGCCAGATGAATATTTATCACGAGTGGGTTTCATGAATAAAGATTTCTCTGAATTCAATCCACGTTTTACATCTGGAAACAATAATGAGGATGTGAAGTTCCTGCTGCGATGTACCTCACCATTGTTATGGAGTAATAATAGTGCAGTTGTACTAGCAGCTGCCGGTGTACACTGGATTATGTCACCAATGGAGGAAGTAAAAAGAATTGTTAAACCGCTCTTGTTTGTCCAAAGATCATCTACTGCCTCAAAATATGTGTGCAGGTTTTGTGCAACATTCAAGTGTTTGCTAAAGCAATTCCTTCGCTCTTCTCTCCATATTTTGAAGACTTCTTTATATGCTCATCAGATTCATATCAAATTAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

AP3B1_C Adaptin_N

Protein Analysis

297

Amino Acids

33.12

Weight (kDa)

8.02

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cnd1	PF12717	4 - 137	6.4e-10	non-SMC mitotic condensation complex subunit 1
Adaptin_N	PF01602	7 - 260	8.6e-18	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55480 AT3G55480
fragaria_vesca	FvH4_7g22680 FvH4_7g22680 FvH4_7g22680 FvH4_7g22680
malus_domestica	MD01G1135400.v1.1 MD07G1200100.v1.1
prunus_persica	Prupe.2G236800_v2.0.a1 Prupe.2G236800_v2.0.a1
pyrus_communis	pycom01g15610 pycom07g18690
rosa_chinensis	RchiOBHm_Chr1g0367761
rosa_laevigata	RLG00000027265
rosa_multiflora	Rmu_ssc0000395.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289240
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343600 Rh1BG305500 Rh1CG321100 Rh1DG337700
rosa_wichuraiana	Rw1G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	774
AccBSI	CCGCTC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	1 cut(s)	737
AclWI	GGATC	5 cut(s)	4, 17, 62, 322, 335
AcsI	RAATTY	2 cut(s)	403, 572
AfaI	GTAC	3 cut(s)	634, 672, 690
AgsI	TTSAA	7 cut(s)	155, 178, 228, 299, 577, 802, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
AluBI	AGCT	3 cut(s)	115, 206, 680
AluI	AGCT	3 cut(s)	115, 206, 680
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	5 cut(s)	4, 17, 62, 322, 335
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	9 cut(s)	16, 95, 206, 209, 212, 215, 625, 677, 680
ApoI	RAATTY	2 cut(s)	403, 572
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	3 cut(s)	31, 129, 339
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	630, 696
AsuII	TTCGAA	1 cut(s)	85
BamHI	GGATCC	2 cut(s)	9, 327
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	3 cut(s)	456, 464, 854
BbvI	GCAGC	9 cut(s)	3, 82, 193, 196, 199, 202, 612, 667, 689
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	63, 674
BfmI	CTRYAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	774
BisI	GCNGC	9 cut(s)	17, 96, 207, 210, 213, 216, 626, 678, 681
BlsI	GCNGC	9 cut(s)	18, 97, 208, 211, 214, 217, 627, 679, 682
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	11, 329
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	3 cut(s)	456, 464, 854
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	85
BsaBI	GATNNNNATC	2 cut(s)	326, 875
Bse118I	RCCGGY	2 cut(s)	146, 683
Bse1I	ACTGG	1 cut(s)	698
Bse8I	GATNNNNATC	2 cut(s)	326, 875
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	2 cut(s)	326, 875
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	698
BseXI	GCAGC	9 cut(s)	3, 82, 193, 196, 199, 202, 612, 667, 689
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	3 cut(s)	386, 684, 802
BshFI	GGCC	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	13, 147, 684
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	9, 67, 252, 327, 755
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	427
BspHI	TCATGA	2 cut(s)	475, 552
BspLI	GGNNCC	2 cut(s)	11, 329
BspMI	ACCTGC	1 cut(s)	774
BspPI	GGATC	5 cut(s)	4, 17, 62, 322, 335
BspQI	GCTCTTC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	739
BsrFI	RCCGGY	2 cut(s)	146, 683
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	2 cut(s)	146, 683
BssMI	GATC	5 cut(s)	9, 67, 252, 327, 755
BssNAI	GTATAC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	540
Bst1107I	GTATAC	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	3 cut(s)	150, 229, 835
BstAUI	TGTACA	1 cut(s)	688
BstBI	TTCGAA	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	111, 414
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	3 cut(s)	31, 129, 339
BstKTI	GATC	5 cut(s)	12, 70, 255, 330, 758
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	5 cut(s)	9, 67, 252, 327, 755
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 212, 215
BstNSI	RCATGY	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	9 cut(s)	3, 82, 193, 196, 199, 202, 612, 667, 689
BstV2I	GAAGAC	3 cut(s)	456, 464, 854
BstX2I	RGATCY	3 cut(s)	9, 67, 327
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	3 cut(s)	9, 67, 327
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	523
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	691
BveI	ACCTGC	1 cut(s)	774
CciI	TCATGA	2 cut(s)	475, 552
CfoI	GCGC	3 cut(s)	31, 129, 339
Cfr10I	RCCGGY	2 cut(s)	146, 683
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	3 cut(s)	633, 671, 689
CviAII	CATG	5 cut(s)	20, 356, 463, 476, 553
CviJI	RGCY	8 cut(s)	5, 16, 115, 206, 383, 523, 680, 889
CviKI_1	RGCY	8 cut(s)	5, 16, 115, 206, 383, 523, 680, 889
CviQI	GTAC	3 cut(s)	633, 671, 689
DdeI	CTNAG	2 cut(s)	111, 414
DpnI	GATC	5 cut(s)	11, 69, 254, 329, 757
DpnII	GATC	5 cut(s)	9, 67, 252, 327, 755
Eam1104I	CTCTTC	3 cut(s)	150, 229, 835
EarI	CTCTTC	3 cut(s)	150, 229, 835
EcoRI	GAATTC	2 cut(s)	403, 572
FaeI	CATG	5 cut(s)	23, 359, 466, 479, 556
FatI	CATG	5 cut(s)	19, 355, 462, 475, 552
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	9 cut(s)	17, 96, 207, 210, 213, 216, 626, 678, 681
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	9 cut(s)	17, 96, 207, 210, 213, 216, 626, 678, 681
FspBI	CTAG	2 cut(s)	63, 674
GlaI	GCGC	3 cut(s)	30, 128, 338
GluI	GCNGC	9 cut(s)	17, 96, 207, 210, 213, 216, 626, 678, 681
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	3 cut(s)	13, 147, 684
HhaI	GCGC	3 cut(s)	31, 129, 339
Hin1II	CATG	5 cut(s)	23, 359, 466, 479, 556
Hin6I	GCGC	3 cut(s)	29, 127, 337
HinP1I	GCGC	3 cut(s)	29, 127, 337
HinfI	GANTC	4 cut(s)	283, 371, 479, 871
HpaII	CCGG	3 cut(s)	13, 147, 684
HphI	GGTGA	2 cut(s)	630, 696
Hpy166II	GTNNAC	3 cut(s)	141, 689, 691
Hpy188I	TCNGA	6 cut(s)	252, 257, 417, 484, 571, 870
Hpy188III	TCNNGA	4 cut(s)	476, 540, 553, 594
Hpy8I	GTNNAC	3 cut(s)	141, 689, 691
HpyAV	CCTTC	4 cut(s)	229, 264, 512, 833
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	8 cut(s)	19, 104, 350, 367, 391, 665, 783, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 212, 215
HpyF3I	CTNAG	2 cut(s)	111, 414
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	5 cut(s)	23, 359, 466, 479, 556
HspAI	GCGC	3 cut(s)	29, 127, 337
Kzo9I	GATC	5 cut(s)	9, 67, 252, 327, 755
LguI	GCTCTTC	1 cut(s)	835
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	9 cut(s)	3, 82, 193, 196, 199, 202, 612, 667, 689
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	63, 674
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	428, 702
MalI	GATC	5 cut(s)	11, 69, 254, 329, 757
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	5 cut(s)	9, 67, 252, 327, 755
MboII	GAAGA	8 cut(s)	167, 216, 270, 311, 461, 464, 822, 859
MflI	RGATCY	3 cut(s)	9, 67, 327
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	181, 260
MnlI	CCTC	5 cut(s)	151, 601, 646, 706, 778
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	732, 884
MslI	CAYNNNNRTG	2 cut(s)	646, 802
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	3 cut(s)	13, 147, 684
MwoI	GCNNNNNNNGC	3 cut(s)	101, 212, 215
NdeII	GATC	5 cut(s)	9, 67, 252, 327, 755
NlaIII	CATG	5 cut(s)	23, 359, 466, 479, 556
NlaIV	GGNNCC	2 cut(s)	11, 329
NmuCI	GTSAC	2 cut(s)	428, 702
NspI	RCATGY	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	85
PagI	TCATGA	2 cut(s)	475, 552
PciSI	GCTCTTC	1 cut(s)	835
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	283, 371, 871
PkrI	GCNGC	9 cut(s)	18, 97, 208, 211, 214, 217, 627, 679, 682
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	11, 329
PspPI	GGNCC	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	9, 67, 327
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	634, 672, 690
RsaNI	GTAC	3 cut(s)	633, 671, 689
RseI	CAYNNNNRTG	2 cut(s)	646, 802
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	2 cut(s)	732, 884
SatI	GCNGC	9 cut(s)	17, 96, 207, 210, 213, 216, 626, 678, 681
Sau3AI	GATC	5 cut(s)	9, 67, 252, 327, 755
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	488
SetI	ASST	8 cut(s)	117, 162, 208, 275, 586, 638, 682, 788
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	646, 802
SsiI	CCGC	1 cut(s)	737
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	63, 674
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	85, 505
TatI	WGTACW	2 cut(s)	670, 688
TfiI	GAWTC	3 cut(s)	283, 371, 871
Tru1I	TTAA	2 cut(s)	732, 884
Tru9I	TTAA	2 cut(s)	732, 884
TscAI	CASTG	1 cut(s)	698
TseFI	GTSAC	2 cut(s)	428, 702
TseI	GCWGC	9 cut(s)	16, 95, 206, 209, 212, 215, 625, 677, 680
Tsp45I	GTSAC	2 cut(s)	428, 702
TspDTI	ATGAA	5 cut(s)	464, 541, 543, 569, 863
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	698
XapI	RAATTY	2 cut(s)	403, 572
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	63, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.