Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009039

Physical Location & Seq

Genomic Coordinates Reverse (-)

20852380 .. 20855610

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCGGATTCTTACTGCTCGCATAGCTAACCATTTTTGCAGGGCACGAAACGCGAATCCTCGATCTCGAAATTTCTCCTCGTCGAACAAGAAAGATGACCTTACATTGGAGGAAGAAGCTGAGAGGAAAATAGGTTGGTGTCTCAAAATTTTCTTTGCGGGCACAGCAACGTATATTGGATACCAGTTTTTCCCTTACTTAGGTGATAACTTAATTCATCAATCAATATCGCTTTTACATGTGAAGGATCCTTTGTTTAAGAGAATGGGAGCTTCTCGGCTTTCCCGTTTCGCTATTGATGATGAAAGGAGGATGAAGGTTGTAGAGATGGGTGGGGCTCAAGAGCTACTACATATGTTGGGAAGTGCTAAAGATGACAAGACAAGGAAAGAAGCCCTAAAGGCTCTTGCTGCTCTCTCTAAATCAGGTGAAGCTGCTAAATTCCTAGGCTCTAATGGAGCACTCTCTATCGTCAAATCGACTCCAAATTCCTTGGAAGATTCAGACATTTCAACATACAAGTCAAACATACTCGAGAAGCTAGTTGAGAAAAACCTCGCTGTCTCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

9.54

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56210 AT3G56210 AT3G56210 AT3G56210
fragaria_vesca	FvH4_7g25501
malus_domestica	MD01G1161400.v1.1 MD07G1229300.v1.1
prunus_persica	Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1
pyrus_communis	pycom01g17720
rosa_chinensis	RchiOBHm_Chr1g0371481
rosa_laevigata	RLG00000026958
rosa_multiflora	Rmu_sc0000809.1_g000019 Rmu_sc0029071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285650
rosa_samantha	Rh1AG374500 Rh1BG337900 Rh1CG351200 Rh1DG368900
rosa_wichuraiana	Rw1G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	4, 158
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	4 cut(s)	70, 147, 440, 487
AfiI	CCNNNNNNNGG	2 cut(s)	106, 200
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	513
AluBI	AGCT	6 cut(s)	26, 119, 272, 346, 434, 541
AluI	AGCT	6 cut(s)	26, 119, 272, 346, 434, 541
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	146, 568
AlwI	GGATC	2 cut(s)	242, 255
Ama87I	CYCGRG	1 cut(s)	533
ApeKI	GCWGC	2 cut(s)	410, 434
ApoI	RAATTY	4 cut(s)	70, 147, 440, 487
AspA2I	CCTAGG	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	215, 440
AvaI	CYCGRG	1 cut(s)	533
AvrII	CCTAGG	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	46, 164
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	397, 421
BccI	CCATC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	146, 568
BfaI	CTAG	2 cut(s)	446, 542
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	411, 435
BlnI	CCTAGG	1 cut(s)	445
BlsI	GCNGC	2 cut(s)	412, 436
BmeT110I	CYCGRG	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	445, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 200
Bse1I	ACTGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	445, 492
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	106, 200
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	2 cut(s)	46, 164
BseXI	GCAGC	2 cut(s)	397, 421
Bsh1236I	CGCG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	106, 200
BsmAI	GTCTC	2 cut(s)	146, 568
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	4 cut(s)	46, 164, 340, 463
Bsp143I	GATC	2 cut(s)	62, 247
BspACI	CCGC	2 cut(s)	4, 158
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	242, 255
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	445, 492
BssMI	GATC	2 cut(s)	62, 247
BssT1I	CCWWGG	2 cut(s)	445, 492
Bst6I	CTCTTC	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	19, 160
BstDEI	CTNAG	2 cut(s)	120, 199
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	65, 250
BstMAI	GTCTC	2 cut(s)	146, 568
BstMBI	GATC	2 cut(s)	62, 247
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 50, 164, 401, 410
BstNSI	RCATGY	1 cut(s)	242
BstSLI	GKGCMC	2 cut(s)	46, 164
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	397, 421
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	19, 160
CviAII	CATG	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	120, 199
DpnI	GATC	2 cut(s)	64, 249
DpnII	GATC	2 cut(s)	62, 247
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	445, 492
Eco24I	GRGCYC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	445, 492
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	445, 492
FaeI	CATG	1 cut(s)	242
FaiI	YATR	7 cut(s)	23, 174, 240, 354, 356, 517, 530
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	1 cut(s)	238
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	411, 435
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	411, 435
FspBI	CTAG	2 cut(s)	446, 542
GluI	GCNGC	2 cut(s)	411, 435
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	4 cut(s)	7, 55, 481, 500
HphI	GGTGA	2 cut(s)	215, 440
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	66, 341, 535
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	238, 310
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 50, 164, 401, 410
HpyF3I	CTNAG	2 cut(s)	120, 199
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	62, 247
LmnI	GCTCC	2 cut(s)	269, 458
LpnPI	CCDG	3 cut(s)	25, 197, 411
Lsp1109I	GCAGC	2 cut(s)	397, 421
MaeI	CTAG	2 cut(s)	446, 542
MaeII	ACGT	1 cut(s)	170
MalI	GATC	2 cut(s)	64, 249
MboI	GATC	2 cut(s)	62, 247
MboII	GAAGA	3 cut(s)	125, 509, 558
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	4 cut(s)	46, 164, 340, 463
MluCI	AATT	5 cut(s)	70, 147, 213, 440, 487
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	69, 88, 103, 117, 303, 566
MseI	TTAA	2 cut(s)	212, 258
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	5 cut(s)	23, 50, 164, 401, 410
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	2 cut(s)	62, 247
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	256
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	533
PciI	ACATGT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	7, 55, 500
PkrI	GCNGC	2 cut(s)	412, 436
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	212, 258
SatI	GCNGC	2 cut(s)	411, 435
Sau3AI	GATC	2 cut(s)	62, 247
SchI	GAGTC	1 cut(s)	475
SduI	GDGCHC	4 cut(s)	46, 164, 340, 463
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	339, 533
SmoI	CTYRAG	2 cut(s)	339, 533
Sse9I	AATT	5 cut(s)	70, 147, 213, 440, 487
SsiI	CCGC	2 cut(s)	4, 158
SspMI	CTAG	2 cut(s)	446, 542
StyI	CCWWGG	2 cut(s)	445, 492
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	5 cut(s)	61, 67, 83, 479, 534
TasI	AATT	5 cut(s)	70, 147, 213, 440, 487
TfiI	GAWTC	3 cut(s)	7, 55, 500
Tru1I	TTAA	2 cut(s)	212, 258
Tru9I	TTAA	2 cut(s)	212, 258
TseI	GCWGC	2 cut(s)	410, 434
TspDTI	ATGAA	3 cut(s)	206, 318, 329
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	4 cut(s)	70, 147, 440, 487
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	533
XmaJI	CCTAGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	446, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.