Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009039

Physical Location & Seq

Genomic Coordinates Reverse (-)

59397062 .. 59398927

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG368900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCGCTCGTTAGCAACCAAACTCACCACTTGTGCAAAGCATTACTGTAGAACAAACCCAGTACGGAATGTGCAGTCTCGCAGTTTCTCATCTTACAATGGAAGAGATGAGCTCTCACTTGAACAAGAAGCTGATAGAAAAATCGGGTGGTTGTTGAAATTGTTATTTGCTGGCACTGCCACTGCTGTAGCTTACAACATCATGCCATACATGGGAGATAATTTGTTGCAACAGTCGGTGTCGCTTTTGCAAGTGAAGGATCCGTTGTTCAAGAGGATGGGGGCTTCTAGATTAGCGCAGTTTGCGATAGATGATGAAAGGAGGATGAAAATAGTGGAGATGGGTGGTGCTCAGGAGCTCGTAAATATGTTGGGGAATGCTAAAGATGACAGCACAAGGAAGGAAGCTTTGAAAGCTCTTTCTGCTATTTCACAATCAGGTCAGATTATTGTGTTGATACTGCATATGCCCTATGCCTGTATACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.08

Weight (kDa)

9.37

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56210 AT3G56210 AT3G56210 AT3G56210
fragaria_vesca	FvH4_7g25501
malus_domestica	MD01G1161400.v1.1 MD07G1229300.v1.1
prunus_persica	Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1
pyrus_communis	pycom01g17720
rosa_chinensis	RchiOBHm_Chr1g0371481
rosa_laevigata	RLG00000026958
rosa_multiflora	Rmu_sc0000809.1_g000019 Rmu_sc0029071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285650
rosa_samantha	Rh1AG374500 Rh1BG337900 Rh1CG351200 Rh1DG368900
rosa_wichuraiana	Rw1G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	481
AclWI	GGATC	2 cut(s)	254, 267
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	122, 157, 271, 412
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	112, 131, 191, 358, 407, 416
AluI	AGCT	6 cut(s)	112, 131, 191, 358, 407, 416
Alw21I	GWGCWC	3 cut(s)	114, 352, 360
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	254, 267
AspLEI	GCGC	2 cut(s)	6, 298
AsuHPI	GGTGA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	114, 360
Bbv12I	GWGCWC	3 cut(s)	114, 352, 360
BccI	CCATC	2 cut(s)	271, 334
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	46, 186
BmiI	GGNNCC	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu10I	CCTNAGC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	59
BseGI	GGATG	2 cut(s)	282, 330
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	114, 352, 360
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	382
Bsp1286I	GDGCHC	3 cut(s)	114, 352, 360
Bsp143I	GATC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	254, 267
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	259
BssNAI	GTATAC	1 cut(s)	482
Bst1107I	GTATAC	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	47, 234
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	282, 330
BstHHI	GCGC	2 cut(s)	6, 298
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 302, 413, 422
BstSFI	CTRYAG	2 cut(s)	46, 186
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	282, 330
BtsI	GCAGTG	2 cut(s)	174, 180
BtsIMutI	CAGTG	2 cut(s)	174, 180
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	6, 298
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	202, 211
CviJI	RGCY	7 cut(s)	112, 131, 191, 284, 358, 407, 416
CviKI_1	RGCY	7 cut(s)	112, 131, 191, 284, 358, 407, 416
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Ecl136II	GAGCTC	2 cut(s)	112, 358
Eco24I	GRGCYC	2 cut(s)	114, 360
Eco53kI	GAGCTC	2 cut(s)	112, 358
EcoICRI	GAGCTC	2 cut(s)	112, 358
EcoT38I	GRGCYC	2 cut(s)	114, 360
FaeI	CATG	2 cut(s)	205, 214
FaiI	YATR	8 cut(s)	203, 208, 212, 368, 465, 467, 474, 482
FatI	CATG	2 cut(s)	201, 210
FauNDI	CATATG	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	481
FokI	GGATG	2 cut(s)	289, 337
FriOI	GRGCYC	2 cut(s)	114, 360
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	5, 297
HhaI	GCGC	2 cut(s)	6, 298
Hin1II	CATG	2 cut(s)	205, 214
Hin6I	GCGC	2 cut(s)	4, 296
HinP1I	GCGC	2 cut(s)	4, 296
HindIII	AAGCTT	1 cut(s)	405
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	3 cut(s)	271, 288, 353
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	2 cut(s)	250, 394
HpyCH4III	ACNGT	2 cut(s)	47, 234
HpyCH4V	TGCA	5 cut(s)	35, 73, 229, 250, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 302, 413, 422
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	205, 214
HspAI	GCGC	2 cut(s)	4, 296
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	4 cut(s)	72, 156, 338, 423
MaeI	CTAG	1 cut(s)	288
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	114
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	114, 352, 360
MluCI	AATT	2 cut(s)	158, 220
MnlI	CCTC	2 cut(s)	267, 315
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	4 cut(s)	176, 302, 413, 422
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	205, 214
NlaIV	GGNNCC	1 cut(s)	261
PctI	GAATGC	1 cut(s)	382
Psp124BI	GAGCTC	2 cut(s)	114, 360
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SacI	GAGCTC	2 cut(s)	114, 360
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	3 cut(s)	114, 352, 360
SetI	ASST	7 cut(s)	114, 133, 193, 360, 409, 418, 442
SfcI	CTRYAG	2 cut(s)	46, 186
Sse9I	AATT	2 cut(s)	158, 220
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	2 cut(s)	114, 360
TaaI	ACNGT	2 cut(s)	47, 234
TasI	AATT	2 cut(s)	158, 220
TscAI	CASTG	2 cut(s)	181, 187
TspDTI	ATGAA	2 cut(s)	330, 341
TspGWI	ACGGA	2 cut(s)	79, 252
TspRI	CASTG	2 cut(s)	181, 187
XbaI	TCTAGA	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.