Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009039

Physical Location & Seq

Genomic Coordinates Reverse (-)

26664887 .. 26666860

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1161400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCGCACGTTAGCATCCAAGCTCACCGCTTATTCGAAGTATTACTGTACAAGAAGCCCGGTGCGCAATGCGCCGCCCCGCAATTTCTCAACTCACAACGGAAGAGATGAGCTCTCCCTCGAAGAGGAAGCTGAAAGAAAAATTGGATGGATGTTGAAGCTGATATTTGCTGGGACTGCAACTTGCGTAGCTTACAACATCATGCCTTATATGGGGGATACTTTATTGCAACAGTCCGTGTCGCTGTTGACAGTCAAGGATCCTTTGTTTAAGAGAATGGGGGCTTCTCGATTGGCTCAGTTTGCGGTTGATGATGAAAGGAGAATGAAAATTGTGGAGATGGGTGGTGCTCAAGAGCTCGTGAATATGTTGGGGGCCGCTAAGGATGACAGCACAAGGAAGGAGGCTTTGAAAGCTCTTACCGCTCTATCACCCTCAGATAAAGCTCTTGGAGCTTTACACCAAGCTGGGGCAATCCCAGTTATCAGATCCACCCCTGATTCTCTGGAGAATGCTGAAATCGAGAAATACAAGTCGGGCTTACTCAGGAGATTCCAAGATCAGAGATACGATTTTCCAACCGCAGATGTTTCAAGGTCTTTAGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.67

Weight (kDa)

9.02

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56210 AT3G56210 AT3G56210 AT3G56210
fragaria_vesca	FvH4_7g25501
malus_domestica	MD01G1161400.v1.1 MD07G1229300.v1.1
prunus_persica	Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1
pyrus_communis	pycom01g17720
rosa_chinensis	RchiOBHm_Chr1g0371481
rosa_laevigata	RLG00000026958
rosa_multiflora	Rmu_sc0000809.1_g000019 Rmu_sc0029071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285650
rosa_samantha	Rh1AG374500 Rh1BG337900 Rh1CG351200 Rh1DG368900
rosa_wichuraiana	Rw1G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	5, 65
AccBSI	CCGCTC	1 cut(s)	425
AciI	CCGC	7 cut(s)	27, 74, 79, 305, 378, 423, 582
AclWI	GGATC	3 cut(s)	254, 267, 483
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	124, 212, 469
AgsI	TTSAA	3 cut(s)	157, 412, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
Alw21I	GWGCWC	3 cut(s)	114, 352, 360
AlwI	GGATC	3 cut(s)	254, 267, 483
AoxI	GGCC	1 cut(s)	375
AspLEI	GCGC	3 cut(s)	6, 66, 73
AspS9I	GGNCC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	16, 423
AsuII	TTCGAA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	114, 360
BauI	CACGAG	1 cut(s)	359
Bbv12I	GWGCWC	3 cut(s)	114, 352, 360
BccI	CCATC	2 cut(s)	141, 334
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	74, 378
BlsI	GCNGC	2 cut(s)	75, 379
Bme1390I	CCNGG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	261, 376
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 212, 469
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	73
BseGI	GGATG	4 cut(s)	14, 152, 156, 391
BseLI	CCNNNNNNNGG	3 cut(s)	124, 212, 469
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	311, 450, 559
BseNI	ACTGG	1 cut(s)	479
BseYI	CCCAGC	2 cut(s)	170, 467
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	3 cut(s)	114, 352, 360
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	124, 212, 469
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	114, 352, 360
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	259, 488, 559
BspACI	CCGC	7 cut(s)	27, 74, 79, 305, 378, 423, 582
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	310, 449, 558
BspLI	GGNNCC	2 cut(s)	261, 376
BspPI	GGATC	3 cut(s)	254, 267, 483
BspT104I	TTCGAA	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	479
BssMI	GATC	3 cut(s)	259, 488, 559
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	47, 234, 253
Bst6I	CTCTTC	2 cut(s)	97, 117
BstAUI	TGTACA	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	35
BstDEI	CTNAG	4 cut(s)	297, 381, 436, 545
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	4 cut(s)	14, 152, 156, 391
BstHHI	GCGC	3 cut(s)	6, 66, 73
BstKTI	GATC	3 cut(s)	262, 491, 562
BstMBI	GATC	3 cut(s)	259, 488, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 70, 176, 302, 413, 422, 452
BstSCI	CCNGG	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	259, 488
BstYI	RGATCY	2 cut(s)	259, 488
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	14, 152, 156, 391
CfoI	GCGC	3 cut(s)	6, 66, 73
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	4 cut(s)	297, 381, 436, 545
DpnI	GATC	3 cut(s)	261, 490, 561
DpnII	GATC	3 cut(s)	259, 488, 559
Eam1104I	CTCTTC	2 cut(s)	97, 117
EarI	CTCTTC	2 cut(s)	97, 117
Ecl136II	GAGCTC	2 cut(s)	112, 358
Eco24I	GRGCYC	2 cut(s)	114, 360
Eco53kI	GAGCTC	2 cut(s)	112, 358
EcoICRI	GAGCTC	2 cut(s)	112, 358
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoT38I	GRGCYC	2 cut(s)	114, 360
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	203, 210, 212, 368
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	201
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	74, 378
FokI	GGATG	3 cut(s)	159, 163, 398
FriOI	GRGCYC	2 cut(s)	114, 360
Fsp4HI	GCNGC	2 cut(s)	74, 378
FspAI	RTGCGCAY	1 cut(s)	5
FspI	TGCGCA	2 cut(s)	5, 65
GlaI	GCGC	3 cut(s)	5, 65, 72
GluI	GCNGC	2 cut(s)	74, 378
GsaI	CCCAGC	2 cut(s)	174, 471
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	3 cut(s)	6, 66, 73
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	3 cut(s)	4, 64, 71
HinP1I	GCGC	3 cut(s)	4, 64, 71
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	500, 552
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	16, 423
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	439, 488, 564
Hpy188III	TCNNGA	6 cut(s)	288, 353, 361, 506, 523, 547
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	3 cut(s)	47, 234, 253
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	179, 229
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 70, 176, 302, 413, 422, 452
HpyF3I	CTNAG	4 cut(s)	297, 381, 436, 545
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	3 cut(s)	4, 64, 71
Kzo9I	GATC	3 cut(s)	259, 488, 559
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	7 cut(s)	72, 156, 453, 491, 492, 510, 532
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	8
MalI	GATC	3 cut(s)	261, 490, 561
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	3 cut(s)	259, 488, 559
MboII	GAAGA	2 cut(s)	114, 134
MflI	RGATCY	2 cut(s)	259, 488
MhlI	GDGCHC	3 cut(s)	114, 352, 360
MluCI	AATT	3 cut(s)	82, 141, 330
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	4 cut(s)	118, 128, 397, 445
MseI	TTAA	2 cut(s)	270, 610
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	517
MwoI	GCNNNNNNNGC	7 cut(s)	63, 70, 176, 302, 413, 422, 452
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	259, 488, 559
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	261, 376
NsbI	TGCGCA	2 cut(s)	5, 65
NspV	TTCGAA	1 cut(s)	35
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	500, 552
PkrI	GCNGC	2 cut(s)	75, 379
Psp124BI	GAGCTC	2 cut(s)	114, 360
PspFI	CCCAGC	2 cut(s)	170, 467
PspN4I	GGNNCC	2 cut(s)	261, 376
PspPI	GGNCC	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	259, 488
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SacI	GAGCTC	2 cut(s)	114, 360
SaqAI	TTAA	2 cut(s)	270, 610
SatI	GCNGC	2 cut(s)	74, 378
Sau3AI	GATC	3 cut(s)	259, 488, 559
Sau96I	GGNCC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	3 cut(s)	114, 352, 360
SfaNI	GCATC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	82, 141, 330
SsiI	CCGC	7 cut(s)	27, 74, 79, 305, 378, 423, 582
SstI	GAGCTC	2 cut(s)	114, 360
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	47, 234, 253
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	35, 120, 289, 522
TasI	AATT	3 cut(s)	82, 141, 330
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	2 cut(s)	76, 380
TfiI	GAWTC	2 cut(s)	500, 552
Tru1I	TTAA	2 cut(s)	270, 610
Tru9I	TTAA	2 cut(s)	270, 610
TspDTI	ATGAA	2 cut(s)	330, 341
TspGWI	ACGGA	2 cut(s)	114, 226
XagI	CCTNNNNNAGG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.