Prupe.2G259500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009039
Physical Location & Seq
Reverse (-)
26972619 .. 26975192
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G259500.2

Sequence Viewer

Length: 603 bp
ATGCGTACGTTAGCAGCCAGGCTCACCACTTATTACTGTAGAAGAAACCCAGTACGGAATTCGCAGCCTCGCAATTTCTCCACTTACAACGGAAGAGATGAGCTCTCCCTTGAACAGGACGCTGAAAGAAAAATCGGATGGCTGTTGAAGCTGATATTTGCTGGGACTGCTACTTGCATAGCTTACAACATCATGCCGTATATGGGAGATAATTTGTTGCAACAGTCCGTGTCACTTTTAACAGTCAAGGATCCTTTGTTCAAGAGAATGGGGGCTTCTCGATTAGCTCAGTTTGCGATTGATGATGAAAGGAGGATGAAAATAGTGGAGATGGGTGGTGCTCAAGAGCTCGTAAACATGTTGGTGGATGCTAAAGATGACCGCACAAGGAAGGAGGCTTTGAAAGCTCTTTCTGCTCTGTCACCCTCAGATCAAGCTATTGGAGCTTTACACCAAGCTGGGGCAATCTCAGTTATCAGATCAACCCCTGATTCCTTGGAGAGTGCTGAAATTGAGAAATACAAGTCAGGCTTGCTCAAGAGATTTCAAGATCTTAGATACGATGTTCCGTCTACAAATGTGTCAAGGTCTTCAGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.43

Weight (kDa)

9.25

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 572
AciI CCGC 1 cut(s) 382
AclWI GGATC 2 cut(s) 245, 258
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 2 cut(s) 7, 54
AfiI CCNNNNNNNGG 3 cut(s) 115, 203, 460
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 5 cut(s) 113, 148, 262, 403, 548
AjnI CCWGG 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 9 cut(s) 103, 151, 182, 287, 349, 407, 437, 446, 458
AluI AGCT 9 cut(s) 103, 151, 182, 287, 349, 407, 437, 446, 458
Alw21I GWGCWC 3 cut(s) 105, 343, 351
AlwI GGATC 2 cut(s) 245, 258
ApeKI GCWGC 2 cut(s) 14, 64
ApoI RAATTY 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 16, 414
BamHI GGATCC 1 cut(s) 250
BanII GRGCYC 2 cut(s) 105, 351
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 3 cut(s) 105, 343, 351
BbvI GCAGC 2 cut(s) 26, 76
BccI CCATC 2 cut(s) 132, 325
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 37
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 15, 65
BlsI GCNGC 2 cut(s) 16, 66
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 19
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpuEI CTTGAG 2 cut(s) 327, 521
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 203, 460
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 143, 321, 373
BseLI CCNNNNNNNGG 3 cut(s) 115, 203, 460
BseMII CTCAG 3 cut(s) 302, 441, 483
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 26, 76
BseYI CCCAGC 2 cut(s) 161, 458
BsiHKAI GWGCWC 3 cut(s) 105, 343, 351
BsiWI CGTACG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 3 cut(s) 115, 203, 460
BsmFI GGGAC 1 cut(s) 178
Bsp1286I GDGCHC 3 cut(s) 105, 343, 351
Bsp143I GATC 4 cut(s) 250, 430, 479, 550
BspACI CCGC 1 cut(s) 382
BspCNI CTCAG 3 cut(s) 301, 440, 482
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 2 cut(s) 245, 258
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 4 cut(s) 250, 430, 479, 550
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 3 cut(s) 38, 225, 244
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 5 cut(s) 288, 427, 469, 554, 600
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 3 cut(s) 143, 321, 373
BstKTI GATC 4 cut(s) 253, 433, 482, 553
BstMBI GATC 4 cut(s) 250, 430, 479, 550
BstMWI GCNNNNNNNGC 6 cut(s) 148, 167, 293, 404, 413, 443
BstNI CCWGG 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 26, 76
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 2 cut(s) 250, 550
BstYI RGATCY 2 cut(s) 250, 550
BtsCI GGATG 3 cut(s) 143, 321, 373
Cac8I GCNNGC 1 cut(s) 533
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 6, 53
CviAII CATG 2 cut(s) 193, 358
CviQI GTAC 2 cut(s) 6, 53
DdeI CTNAG 5 cut(s) 288, 427, 469, 554, 600
DpnI GATC 4 cut(s) 252, 432, 481, 552
DpnII GATC 4 cut(s) 250, 430, 479, 550
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 2 cut(s) 103, 349
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 2 cut(s) 105, 351
Eco53kI GAGCTC 2 cut(s) 103, 349
Eco57I CTGAAG 1 cut(s) 576
EcoICRI GAGCTC 2 cut(s) 103, 349
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 105, 351
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 2 cut(s) 196, 361
FaiI YATR 5 cut(s) 179, 194, 201, 203, 359
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 192, 357
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 2 cut(s) 15, 65
FokI GGATG 3 cut(s) 150, 328, 380
FriOI GRGCYC 2 cut(s) 105, 351
Fsp4HI GCNGC 2 cut(s) 15, 65
GluI GCNGC 2 cut(s) 15, 65
GsaI CCCAGC 2 cut(s) 165, 462
HgaI GACGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 196, 361
HinfI GANTC 2 cut(s) 491, 596
HphI GGTGA 2 cut(s) 16, 414
Hpy166II GTNNAC 2 cut(s) 355, 573
Hpy188I TCNGA 4 cut(s) 137, 430, 479, 595
Hpy188III TCNNGA 5 cut(s) 262, 279, 344, 538, 548
Hpy8I GTNNAC 2 cut(s) 355, 573
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 38, 225, 244
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 177, 220
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 167, 293, 404, 413, 443
HpyF3I CTNAG 5 cut(s) 288, 427, 469, 554, 600
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 2 cut(s) 196, 361
Kzo9I GATC 4 cut(s) 250, 430, 479, 550
LmnI GCTCC 1 cut(s) 443
LpnPI CCDG 8 cut(s) 4, 31, 63, 101, 147, 444, 501, 513
Lsp1109I GCAGC 2 cut(s) 26, 76
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 231, 420
MalI GATC 4 cut(s) 252, 432, 481, 552
MboI GATC 4 cut(s) 250, 430, 479, 550
MboII GAAGA 3 cut(s) 54, 105, 582
MflI RGATCY 2 cut(s) 250, 550
MhlI GDGCHC 3 cut(s) 105, 343, 351
MluCI AATT 4 cut(s) 58, 73, 211, 510
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 4 cut(s) 78, 306, 388, 436
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 6 cut(s) 148, 167, 293, 404, 413, 443
NdeII GATC 4 cut(s) 250, 430, 479, 550
NlaIII CATG 2 cut(s) 196, 361
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 231, 420
NspI RCATGY 1 cut(s) 361
PciI ACATGT 1 cut(s) 357
PfeI GAWTC 1 cut(s) 491
Pfl23II CGTACG 1 cut(s) 5
PkrI GCNGC 2 cut(s) 16, 66
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 2 cut(s) 105, 351
Psp6I CCWGG 1 cut(s) 17
PspFI CCCAGC 2 cut(s) 161, 458
PspGI CCWGG 1 cut(s) 17
PspLI CGTACG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 252
PsuI RGATCY 2 cut(s) 250, 550
RsaI GTAC 2 cut(s) 7, 54
RsaNI GTAC 2 cut(s) 6, 53
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 2 cut(s) 105, 351
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 15, 65
Sau3AI GATC 4 cut(s) 250, 430, 479, 550
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 3 cut(s) 105, 343, 351
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 342, 536
SmoI CTYRAG 2 cut(s) 342, 536
Sse9I AATT 4 cut(s) 58, 73, 211, 510
SsiI CCGC 1 cut(s) 382
SstI GAGCTC 2 cut(s) 105, 351
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 38, 225, 244
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 280
TasI AATT 4 cut(s) 58, 73, 211, 510
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 2 cut(s) 231, 420
TseI GCWGC 2 cut(s) 14, 64
Tsp45I GTSAC 2 cut(s) 231, 420
TspDTI ATGAA 2 cut(s) 321, 332
TspGWI ACGGA 4 cut(s) 70, 105, 217, 558
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.