FvH4_7g25501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009039
Physical Location & Seq
Reverse (-)
19439862 .. 19442109
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25501.t1

Sequence Viewer

Length: 603 bp
ATGCGCGCGTTAGCAACCAAGCTCAGCACATGTGCAAAGCATTACTGTACAAGAAACCCTATACGACATGGGCAGCCTCGCAATTTCTCATCTTTCAACGCAAGAGATGAGCTTTCACTTGAACAAGAAGCCGATAGGAAAATCGGGTGGTTGTTAAAGTTGTTGTTTGCTGGGACTGCCACTGCTGTGGCTTACAACATCATGCCATACATGGGGGAAAATCTGTTGCAACAGTCGTTGTCGCTTTTGCAAGTGAAGGATCCTTTGTTTAAGAGGATGGGAGCTTCTAGATTAGCTCAGTTTGCGGTTGATGATGAAAGGAGGATGAAAATAGTGGAGATGGGTGGAGCTCAGGAACTTATAAATATGTTGGGGAATGCTAAAGATGACAAAACAAGGAAGGAAGCTTTGAAAGCTCTTTCAGCTATTTCACAATCAGATCAAGCTCTTGGAGCTTTACACCAAGCAGGGGCAATCTCAATCATCCGAGCTGCCCCTGATTCCTTGGACCATGCTGAGATCAAGAGATACAAGTTGGGGTTACTCCAGAGATTTGAAGATATGAGATATGATATTCCTCCTCAAGATGTATCAACTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.35

Weight (kDa)

9.25

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccII CGCG 2 cut(s) 6, 8
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 254, 267
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 212, 469
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 4 cut(s) 97, 122, 412, 557
AleI CACNNNNGTG 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 352
AlwI GGATC 2 cut(s) 254, 267
ApeKI GCWGC 2 cut(s) 73, 491
AspLEI GCGC 2 cut(s) 6, 8
AspS9I GGNCC 1 cut(s) 508
AvaII GGWCC 1 cut(s) 508
BamHI GGATCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 85, 478
BccI CCATC 2 cut(s) 271, 334
BfaI CTAG 2 cut(s) 288, 601
BisI GCNGC 2 cut(s) 74, 492
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 2 cut(s) 75, 493
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 469
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 282, 330, 483
BseLI CCNNNNNNNGG 2 cut(s) 212, 469
BseMII CTCAG 4 cut(s) 37, 311, 365, 507
BsePI GCGCGC 1 cut(s) 4
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 85, 478
BseYI CCCAGC 1 cut(s) 170
Bsh1236I CGCG 2 cut(s) 6, 8
BsiHKAI GWGCWC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 212, 469
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 3 cut(s) 259, 439, 519
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 1 cut(s) 305
BspCNI CTCAG 4 cut(s) 36, 310, 364, 508
BspFNI CGCG 2 cut(s) 6, 8
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 254, 267
BsrGI TGTACA 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 504
BssHII GCGCGC 1 cut(s) 4
BssMI GATC 3 cut(s) 259, 439, 519
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 47, 234
BstAUI TGTACA 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 23, 297, 351, 516
BstF5I GGATG 3 cut(s) 282, 330, 483
BstFNI CGCG 2 cut(s) 6, 8
BstHHI GCGC 2 cut(s) 6, 8
BstKTI GATC 3 cut(s) 262, 442, 522
BstMBI GATC 3 cut(s) 259, 439, 519
BstMWI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
BstNSI RCATGY 1 cut(s) 33
BstUI CGCG 2 cut(s) 6, 8
BstV1I GCAGC 2 cut(s) 85, 478
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 259
BtsCI GGATG 3 cut(s) 282, 330, 483
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 6, 8
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 48
CviAII CATG 5 cut(s) 30, 68, 202, 211, 512
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 4 cut(s) 23, 297, 351, 516
DpnI GATC 3 cut(s) 261, 441, 521
DpnII GATC 3 cut(s) 259, 439, 519
Ecl136II GAGCTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 5 cut(s) 33, 71, 205, 214, 515
FaqI GGGAC 1 cut(s) 187
FatI CATG 5 cut(s) 29, 67, 201, 210, 511
Fnu4HI GCNGC 2 cut(s) 74, 492
FokI GGATG 3 cut(s) 289, 337, 470
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 74, 492
FspBI CTAG 2 cut(s) 288, 601
GlaI GCGC 2 cut(s) 5, 7
GluI GCNGC 2 cut(s) 74, 492
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 530
HhaI GCGC 2 cut(s) 6, 8
Hin1II CATG 5 cut(s) 33, 71, 205, 214, 515
Hin6I GCGC 2 cut(s) 4, 6
HinP1I GCGC 2 cut(s) 4, 6
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 439, 488
Hpy188III TCNNGA 5 cut(s) 288, 353, 523, 547, 584
HpyAV CCTTC 2 cut(s) 250, 394
HpyCH4III ACNGT 2 cut(s) 47, 234
HpyCH4V TGCA 3 cut(s) 35, 229, 250
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
HpyF3I CTNAG 4 cut(s) 23, 297, 351, 516
Hsp92II CATG 5 cut(s) 33, 71, 205, 214, 515
HspAI GCGC 2 cut(s) 4, 6
Kzo9I GATC 3 cut(s) 259, 439, 519
LmnI GCTCC 3 cut(s) 281, 347, 452
LpnPI CCDG 5 cut(s) 156, 338, 453, 510, 560
Lsp1109I GCAGC 2 cut(s) 85, 478
MaeI CTAG 2 cut(s) 288, 601
MaeIII GTNAC 1 cut(s) 540
MalI GATC 3 cut(s) 261, 441, 521
MboI GATC 3 cut(s) 259, 439, 519
MboII GAAGA 1 cut(s) 569
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 1 cut(s) 82
MnlI CCTC 5 cut(s) 87, 267, 315, 588, 591
MseI TTAA 2 cut(s) 155, 270
MslI CAYNNNNRTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 382
MvnI CGCG 2 cut(s) 6, 8
MwoI GCNNNNNNNGC 5 cut(s) 176, 302, 413, 422, 452
NdeII GATC 3 cut(s) 259, 439, 519
NlaIII CATG 5 cut(s) 33, 71, 205, 214, 515
NlaIV GGNNCC 1 cut(s) 261
NspI RCATGY 1 cut(s) 33
OliI CACNNNNGTG 1 cut(s) 185
PauI GCGCGC 1 cut(s) 4
PciI ACATGT 1 cut(s) 29
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 500
PkrI GCNGC 2 cut(s) 75, 493
PscI ACATGT 1 cut(s) 29
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 508
PsuI RGATCY 1 cut(s) 259
PteI GCGCGC 1 cut(s) 4
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 155, 270
SatI GCNGC 2 cut(s) 74, 492
Sau3AI GATC 3 cut(s) 259, 439, 519
Sau96I GGNCC 1 cut(s) 508
SduI GDGCHC 1 cut(s) 352
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 1 cut(s) 82
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 288, 601
SstI GAGCTC 1 cut(s) 352
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 47, 234
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 2 cut(s) 155, 270
Tru9I TTAA 2 cut(s) 155, 270
TscAI CASTG 1 cut(s) 187
TseI GCWGC 2 cut(s) 73, 491
TspDTI ATGAA 2 cut(s) 330, 341
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 508
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 33
XspI CTAG 2 cut(s) 288, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.