Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029071.1

Orthogroup ID

OG0009039

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2563

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 655 bp

aaacagacccttcctcaacctcggcgagcatcggagcaatctctcaggcaggatgcgcacgttagcaaccaaactgaccacttgtgcaaagcattactgtagaacaatcccagtacggaatgcgcagtctcgcagtttctcatcttacaatggaagagatgagctctcacttgaacaagaagctgatagaaaaatcgggtggttgttgaaattgttatttgctggcactgccactgctgtagcttacaacatcatgccttatatgggagataatttgttgcaacagtcggtgtcgcttttgcaagtgaaggatcctttgttcaagaggatgggggcttctagattagcgcagtttgcgatagatgatgaaaggaggatgaaaatagtggagatgggtggtgctcaggagctcataaatatgttggggaatgctaaagatgacagcacaaggaaggaagctttgaaagctctttctgctatttcacaatcagatcaagctcttggagctttacaccaagctggggcaatctcagtcatccaagctgcccctgattccttggaacatgccgacattgagaaatacaagtcaggtttgctccagagattccaagatctgagatatgatagtccttctgaagatgtatcaagttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.07

Weight (kDa)

8.85

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56210 AT3G56210 AT3G56210 AT3G56210
fragaria_vesca	FvH4_7g25501
malus_domestica	MD01G1161400.v1.1 MD07G1229300.v1.1
prunus_persica	Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1 Prupe.2G259500_v2.0.a1
pyrus_communis	pycom01g17720
rosa_chinensis	RchiOBHm_Chr1g0371481
rosa_laevigata	RLG00000026958
rosa_multiflora	Rmu_sc0000809.1_g000019 Rmu_sc0029071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285650
rosa_samantha	Rh1AG374500 Rh1BG337900 Rh1CG351200 Rh1DG368900
rosa_wichuraiana	Rw1G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	57, 124
AclWI	GGATC	2 cut(s)	306, 319
AcuI	CTGAAG	1 cut(s)	655
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	264, 521
AgsI	TTSAA	4 cut(s)	174, 209, 323, 464
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
Alw21I	GWGCWC	3 cut(s)	166, 404, 412
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	306, 319
ApeKI	GCWGC	1 cut(s)	543
AspLEI	GCGC	3 cut(s)	58, 125, 350
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	166, 412
Bbv12I	GWGCWC	3 cut(s)	166, 404, 412
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	2 cut(s)	323, 386
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	340, 653
BfmI	CTRYAG	2 cut(s)	98, 238
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	38, 43
BmuI	ACTGGG	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	20, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 521
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	20, 556
BseGI	GGATG	4 cut(s)	58, 334, 382, 535
BseLI	CCNNNNNNNGG	2 cut(s)	264, 521
BseMII	CTCAG	4 cut(s)	58, 417, 544, 606
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	530
BseYI	CCCAGC	1 cut(s)	519
BsiHKAI	GWGCWC	3 cut(s)	166, 404, 412
BslI	CCNNNNNNNGG	2 cut(s)	264, 521
BsmAI	GTCTC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	125, 434
Bsp1286I	GDGCHC	3 cut(s)	166, 404, 412
Bsp143I	GATC	3 cut(s)	311, 491, 611
BspCNI	CTCAG	4 cut(s)	57, 416, 543, 607
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	306, 319
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	20, 556
BssMI	GATC	3 cut(s)	311, 491, 611
BssT1I	CCWWGG	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	99, 286
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	27, 224
BstDEI	CTNAG	4 cut(s)	44, 403, 530, 615
BstF5I	GGATG	4 cut(s)	58, 334, 382, 535
BstHHI	GCGC	3 cut(s)	58, 125, 350
BstKTI	GATC	3 cut(s)	314, 494, 614
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	3 cut(s)	311, 491, 611
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 228, 354, 465, 474, 504
BstNSI	RCATGY	1 cut(s)	567
BstSFI	CTRYAG	2 cut(s)	98, 238
BstV1I	GCAGC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	311, 611
BstYI	RGATCY	2 cut(s)	311, 611
BtsCI	GGATG	4 cut(s)	58, 334, 382, 535
BtsI	GCAGTG	2 cut(s)	226, 232
BtsIMutI	CAGTG	2 cut(s)	226, 232
Cac8I	GCNNGC	2 cut(s)	27, 224
CfoI	GCGC	3 cut(s)	58, 125, 350
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	254, 564
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	4 cut(s)	44, 403, 530, 615
DpnI	GATC	3 cut(s)	313, 493, 613
DpnII	GATC	3 cut(s)	311, 491, 611
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	164, 410
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	166, 412
Eco53kI	GAGCTC	2 cut(s)	164, 410
Eco57I	CTGAAG	1 cut(s)	655
EcoICRI	GAGCTC	2 cut(s)	164, 410
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	166, 412
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	257, 567
FaiI	YATR	7 cut(s)	255, 262, 264, 414, 420, 565, 622
FatI	CATG	2 cut(s)	253, 563
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	4 cut(s)	65, 341, 389, 522
FriOI	GRGCYC	2 cut(s)	166, 412
Fsp4HI	GCNGC	1 cut(s)	544
FspAI	RTGCGCAY	1 cut(s)	57
FspBI	CTAG	2 cut(s)	340, 653
FspI	TGCGCA	2 cut(s)	57, 124
GlaI	GCGC	3 cut(s)	57, 124, 349
GluI	GCNGC	1 cut(s)	544
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	582
HhaI	GCGC	3 cut(s)	58, 125, 350
Hin1II	CATG	2 cut(s)	257, 567
Hin6I	GCGC	3 cut(s)	56, 123, 348
HinP1I	GCGC	3 cut(s)	56, 123, 348
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	2 cut(s)	552, 604
Hpy188I	TCNGA	4 cut(s)	34, 491, 616, 635
Hpy188III	TCNNGA	4 cut(s)	323, 340, 405, 599
HpyAV	CCTTC	4 cut(s)	20, 302, 446, 640
HpyCH4III	ACNGT	2 cut(s)	99, 286
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	87, 281, 302
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 228, 354, 465, 474, 504
HpyF3I	CTNAG	4 cut(s)	44, 403, 530, 615
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	257, 567
HspAI	GCGC	3 cut(s)	56, 123, 348
Kzo9I	GATC	3 cut(s)	311, 491, 611
LmnI	GCTCC	4 cut(s)	34, 407, 504, 601
LpnPI	CCDG	9 cut(s)	31, 35, 124, 208, 390, 505, 562, 574, 612
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	38, 43
MaeI	CTAG	2 cut(s)	340, 653
MaeII	ACGT	1 cut(s)	60
MalI	GATC	3 cut(s)	313, 493, 613
MboI	GATC	3 cut(s)	311, 491, 611
MboII	GAAGA	2 cut(s)	166, 648
MflI	RGATCY	2 cut(s)	311, 611
MhlI	GDGCHC	3 cut(s)	166, 404, 412
MluCI	AATT	2 cut(s)	210, 272
MnlI	CCTC	4 cut(s)	24, 30, 319, 367
MslI	CAYNNNNRTG	1 cut(s)	417
Mva1269I	GAATGC	2 cut(s)	125, 434
MwoI	GCNNNNNNNGC	6 cut(s)	55, 228, 354, 465, 474, 504
NdeII	GATC	3 cut(s)	311, 491, 611
NlaIII	CATG	2 cut(s)	257, 567
NlaIV	GGNNCC	1 cut(s)	313
NsbI	TGCGCA	2 cut(s)	57, 124
NspI	RCATGY	1 cut(s)	567
PctI	GAATGC	2 cut(s)	125, 434
PfeI	GAWTC	2 cut(s)	552, 604
PkrI	GCNGC	1 cut(s)	545
Psp124BI	GAGCTC	2 cut(s)	166, 412
PspFI	CCCAGC	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	311, 611
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	2 cut(s)	166, 412
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	3 cut(s)	311, 491, 611
SduI	GDGCHC	3 cut(s)	166, 404, 412
SfaNI	GCATC	2 cut(s)	38, 43
SfcI	CTRYAG	2 cut(s)	98, 238
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	210, 272
SspMI	CTAG	2 cut(s)	340, 653
SstI	GAGCTC	2 cut(s)	166, 412
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	99, 286
TaiI	ACGT	1 cut(s)	63
TasI	AATT	2 cut(s)	210, 272
TfiI	GAWTC	2 cut(s)	552, 604
TscAI	CASTG	2 cut(s)	233, 239
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	2 cut(s)	382, 393
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	233, 239
XbaI	TCTAGA	1 cut(s)	339
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	2 cut(s)	340, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.