Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008639

Physical Location & Seq

Genomic Coordinates Forward (+)

20870000 .. 20872107

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCGGAGAGGCAACAGAGCCCTGCGGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAAGTGAGAACCGGAACCGGGTCCGAGAATTTCAACCCGGAGAATACAAGGAGAGGATGCTTGAGAGCTGAAATCGACATTTCTCCACAGTTATATGGTGGTCGTGGGTTCTGGGTTCCCTTCAATCTTGAAGACAATTACGACTGTGTGGGAGAATTTGACATAAAGAGAATGGAAGAACAGACAGTGGAGCTTGAGAAGGATCTGATTATGAAAGAGTTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAGGATTTTTGAAGATTTGAAGTGGCAGCTTCAGCAGCAAGCACTGAGATGCAAGGAGACCCCTCAACATTTGCGTTCACACTCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCCCCTGAAGTCTCCGGATCTGATGACCATGGAAATGAAGCAAGCTGGTATGAATCTTTGTAAAACCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGGAAGAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGGAACTTAACAGTTTGAAGTTTAAACCAGCAGGTCCTGATCAAGTAGAGAGATTCAATACCGAGAATTTACCAGTGAATCCACAATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCATAAACAGAGCAAAACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCAGCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATCCAGCAGAAGAAACCAAGACGCTCTCTGCTTCCCTAAGACACCATGTTTTCCATTAACACTTAAAGCACAGATGAACAAAGAATTATCCACCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAGCTAACGAAGAAGTTAAACAAAGTAAACAAGCCTTGGAAGTTGCGTTAAACCGGGTAGAAATCGCTAGTGTGAAGCAACTTGAAGCAGAAGAGGCATTTCGGCAGTGGAACATAGAGTCATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCGATGAAAAGAGAAAGCTTTCCTCAGCGCTCTTTCTTGAGCCATATCAATCAGCACGAGCCACTGATCGATCTCCCTGAGCCAATGCTGAAACGTAACGTCTCAATGGGTAATGCTCTTAACCGAAAAGATGAGAAACAGTTGGTCACGCCGAGGAGAAAGTTTAGGTTCATACAAACACATCAAGCTTCCATTAGAAAAACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

446

Amino Acids

51.24

Weight (kDa)

6.56

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40480 AT3G56270
fragaria_vesca	FvH4_7g25600 FvH4_7g25600
malus_domestica	MD01G1163200.v1.1 MD07G1231200.v1.1
prunus_persica	Prupe.2G261200_v2.0.a1 Prupe.2G261200_v2.0.a1
pyrus_communis	pycom01g17780 pycom07g20910
rosa_chinensis	RchiOBHm_Chr1g0371731
rosa_laevigata	RLG00000026947
rosa_multiflora	Rmu_co8082684.1_g000001 Rmu_co8220228.1_g000001 Rmu_sc0001755.1_g000055 Rmu_sc0019360.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285490
rosa_rugosa	Rorug01G0365800
rosa_samantha	Rh1AG375900 Rh1BG339300 Rh1CG352400 Rh1DG370400
rosa_wichuraiana	Rw1G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	620, 755
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	5 cut(s)	5, 26, 29, 596, 812
AclWI	GGATC	5 cut(s)	270, 300, 319, 462, 517
AcsI	RAATTY	3 cut(s)	88, 215, 664
AcuI	CTGAAG	2 cut(s)	335, 464
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	1 cut(s)	46
AfeI	AGCGCT	1 cut(s)	1160
AfiI	CCNNNNNNNGG	3 cut(s)	28, 57, 78
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	7 cut(s)	26, 278, 371, 453, 594, 949, 1237
AlwI	GGATC	5 cut(s)	270, 300, 319, 462, 517
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	751
Aor13HI	TCCGGA	1 cut(s)	451
Aor51HI	AGCGCT	1 cut(s)	1160
ApeKI	GCWGC	5 cut(s)	346, 355, 779, 800, 809
ApoI	RAATTY	3 cut(s)	88, 215, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	2 cut(s)	826, 1161
AspS9I	GGNCC	2 cut(s)	81, 632
AsuC2I	CCSGG	5 cut(s)	42, 59, 79, 98, 1031
AvaI	CYCGRG	1 cut(s)	751
AvaII	GGWCC	2 cut(s)	81, 632
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanII	GRGCYC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	1187
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	1155
BbvI	GCAGC	5 cut(s)	358, 367, 766, 812, 821
BccI	CCATC	3 cut(s)	406, 438, 694
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 1113, 1147
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	5 cut(s)	42, 59, 79, 98, 1031
BcoDI	GTCTC	7 cut(s)	26, 278, 371, 453, 594, 949, 1237
BfaI	CTAG	2 cut(s)	593, 1044
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	1162
BfuAI	ACCTGC	2 cut(s)	620, 755
BglII	AGATCT	1 cut(s)	957
BisI	GCNGC	6 cut(s)	27, 347, 356, 780, 801, 810
BlsI	GCNGC	6 cut(s)	28, 348, 357, 781, 802, 811
Bme1390I	CCNGG	5 cut(s)	42, 59, 79, 98, 1031
Bme18I	GGWCC	2 cut(s)	81, 632
BmeT110I	CYCGRG	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	81, 632
BmiI	GGNNCC	3 cut(s)	76, 82, 177
BmrFI	CCNGG	5 cut(s)	42, 59, 79, 98, 1031
BmsI	GCATC	2 cut(s)	107, 359
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	992
Bpu10I	CCTNAGC	2 cut(s)	1155, 1209
BpuEI	CTTGAG	5 cut(s)	142, 275, 931, 982, 1189
BpuMI	CCSGG	5 cut(s)	42, 59, 79, 98, 1031
Bsa29I	ATCGAT	1 cut(s)	1200
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	5 cut(s)	465, 504, 577, 1011, 1283
BsaWI	WCCGGW	2 cut(s)	71, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 57, 78
Bse1I	ACTGG	1 cut(s)	671
BseAI	TCCGGA	1 cut(s)	451
BseCI	ATCGAT	1 cut(s)	1200
BseDI	CCNNGG	5 cut(s)	465, 504, 577, 1011, 1283
BseGI	GGATG	2 cut(s)	122, 514
BseLI	CCNNNNNNNGG	3 cut(s)	28, 57, 78
BseMII	CTCAG	3 cut(s)	356, 1169, 1200
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	1 cut(s)	1300
BseXI	GCAGC	5 cut(s)	358, 367, 766, 812, 821
BshVI	ATCGAT	1 cut(s)	1200
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	7 cut(s)	42, 58, 72, 78, 98, 452, 1030
BslI	CCNNNNNNNGG	3 cut(s)	28, 57, 78
BsmAI	GTCTC	7 cut(s)	26, 278, 371, 453, 594, 949, 1237
BsmBI	CGTCTC	3 cut(s)	26, 594, 1237
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	23, 426
Bsp13I	TCCGGA	1 cut(s)	451
Bsp19I	CCATGG	2 cut(s)	465, 504
BspACI	CCGC	5 cut(s)	5, 26, 29, 596, 812
BspCNI	CTCAG	3 cut(s)	357, 1168, 1201
BspDI	ATCGAT	1 cut(s)	1200
BspEI	TCCGGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	76, 82, 177
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	2 cut(s)	620, 755
BspPI	GGATC	5 cut(s)	270, 300, 319, 462, 517
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	5 cut(s)	465, 504, 577, 1011, 1283
BssSI	CACGAG	1 cut(s)	1187
BssT1I	CCWWGG	4 cut(s)	465, 504, 577, 1011
Bst2BI	CACGAG	1 cut(s)	1187
Bst4CI	ACNGT	5 cut(s)	150, 206, 247, 611, 1272
Bst6I	CTCTTC	3 cut(s)	558, 789, 1062
BstAPI	GCANNNNNTGC	1 cut(s)	747
BstC8I	GCNNGC	3 cut(s)	360, 480, 828
BstDEI	CTNAG	4 cut(s)	365, 882, 1155, 1209
BstDSI	CCRYGG	2 cut(s)	465, 504
BstF5I	GGATG	2 cut(s)	122, 514
BstH2I	RGCGCY	1 cut(s)	1162
BstHHI	GCGC	2 cut(s)	826, 1161
BstMAI	GTCTC	7 cut(s)	26, 278, 371, 453, 594, 949, 1237
BstMWI	GCNNNNNNNGC	9 cut(s)	352, 355, 593, 747, 806, 809, 815, 1070, 1121
BstSCI	CCNGG	5 cut(s)	40, 57, 77, 96, 1029
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	5 cut(s)	358, 367, 766, 812, 821
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	4 cut(s)	262, 292, 454, 957
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	4 cut(s)	262, 292, 454, 957
Bsu15I	ATCGAT	1 cut(s)	1200
BsuTUI	ATCGAT	1 cut(s)	1200
BtgI	CCRYGG	2 cut(s)	465, 504
BtsCI	GGATG	2 cut(s)	122, 514
BtsI	GCAGTG	2 cut(s)	424, 1088
BtsIMutI	CAGTG	6 cut(s)	252, 362, 424, 678, 1088, 1193
BveI	ACCTGC	2 cut(s)	620, 755
Cac8I	GCNNGC	3 cut(s)	360, 480, 828
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	2 cut(s)	826, 1161
Cfr13I	GGNCC	2 cut(s)	81, 632
ClaI	ATCGAT	1 cut(s)	1200
CseI	GACGC	2 cut(s)	576, 875
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	466, 505, 891, 1098
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	4 cut(s)	365, 882, 1155, 1209
DraI	TTTAAA	1 cut(s)	622
DraIII	CACNNNGTG	1 cut(s)	686
Eam1104I	CTCTTC	3 cut(s)	558, 789, 1062
EarI	CTCTTC	3 cut(s)	558, 789, 1062
EciI	GGCGGA	2 cut(s)	20, 44
Eco130I	CCWWGG	4 cut(s)	465, 504, 577, 1011
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	81, 632
Eco47III	AGCGCT	1 cut(s)	1160
Eco57I	CTGAAG	2 cut(s)	335, 464
Eco88I	CYCGRG	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	632
EcoT14I	CCWWGG	4 cut(s)	465, 504, 577, 1011
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	4 cut(s)	465, 504, 577, 1011
Esp3I	CGTCTC	3 cut(s)	26, 594, 1237
FaeI	CATG	4 cut(s)	469, 508, 894, 1101
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	4 cut(s)	465, 504, 890, 1097
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	6 cut(s)	27, 347, 356, 780, 801, 810
FokI	GGATG	2 cut(s)	129, 521
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	27, 347, 356, 780, 801, 810
FspBI	CTAG	2 cut(s)	593, 1044
GlaI	GCGC	2 cut(s)	825, 1160
GluI	GCNGC	6 cut(s)	27, 347, 356, 780, 801, 810
GsuI	CTGGAG	1 cut(s)	992
HaeII	RGCGCY	1 cut(s)	1162
HapII	CCGG	7 cut(s)	42, 58, 72, 78, 98, 452, 1030
HgaI	GACGC	2 cut(s)	576, 875
HhaI	GCGC	2 cut(s)	826, 1161
Hin1II	CATG	4 cut(s)	469, 508, 894, 1101
Hin6I	GCGC	2 cut(s)	824, 1159
HinP1I	GCGC	2 cut(s)	824, 1159
HindIII	AAGCTT	2 cut(s)	1147, 1317
HinfI	GANTC	7 cut(s)	37, 286, 490, 539, 651, 676, 1094
HpaII	CCGG	7 cut(s)	42, 58, 72, 78, 98, 452, 1030
Hpy166II	GTNNAC	4 cut(s)	47, 398, 689, 1004
Hpy188I	TCNGA	4 cut(s)	85, 267, 459, 546
Hpy188III	TCNNGA	8 cut(s)	188, 290, 299, 452, 635, 948, 961, 1168
Hpy8I	GTNNAC	4 cut(s)	47, 398, 689, 1004
HpyAV	CCTTC	3 cut(s)	190, 253, 553
HpyCH4III	ACNGT	5 cut(s)	150, 206, 247, 611, 1272
HpyCH4IV	ACGT	2 cut(s)	1225, 1230
HpyCH4V	TGCA	3 cut(s)	372, 761, 782
HpyF10VI	GCNNNNNNNGC	9 cut(s)	352, 355, 593, 747, 806, 809, 815, 1070, 1121
HpyF3I	CTNAG	4 cut(s)	365, 882, 1155, 1209
HpySE526I	ACGT	2 cut(s)	1225, 1230
Hsp92II	CATG	4 cut(s)	469, 508, 894, 1101
HspAI	GCGC	2 cut(s)	824, 1159
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	637
LmnI	GCTCC	2 cut(s)	250, 1121
Lsp1109I	GCAGC	5 cut(s)	358, 367, 766, 812, 821
LweI	GCATC	2 cut(s)	107, 359
MaeI	CTAG	2 cut(s)	593, 1044
MaeII	ACGT	2 cut(s)	1225, 1230
MaeIII	GTNAC	2 cut(s)	1226, 1276
MboII	GAAGA	9 cut(s)	203, 248, 287, 344, 575, 806, 867, 998, 1079
MflI	RGATCY	4 cut(s)	262, 292, 454, 957
MhlI	GDGCHC	2 cut(s)	23, 426
MluCI	AATT	5 cut(s)	88, 196, 215, 664, 929
MlyI	GAGTC	2 cut(s)	280, 1103
MmeI	TCCRAC	1 cut(s)	1099
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	8 cut(s)	606, 621, 696, 902, 909, 993, 1025, 1251
MslI	CAYNNNNRTG	3 cut(s)	367, 470, 531
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	7 cut(s)	42, 58, 72, 78, 98, 452, 1030
MspR9I	CCNGG	5 cut(s)	42, 59, 79, 98, 1031
MssI	GTTTAAAC	1 cut(s)	622
MwoI	GCNNNNNNNGC	9 cut(s)	352, 355, 593, 747, 806, 809, 815, 1070, 1121
NciI	CCSGG	5 cut(s)	42, 59, 79, 98, 1031
NcoI	CCATGG	2 cut(s)	465, 504
NlaIII	CATG	4 cut(s)	469, 508, 894, 1101
NlaIV	GGNNCC	3 cut(s)	76, 82, 177
NmeAIII	GCCGAG	1 cut(s)	1308
NmuCI	GTSAC	1 cut(s)	1276
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	5 cut(s)	37, 490, 539, 651, 676
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	28, 348, 357, 781, 802, 811
PleI	GAGTC	2 cut(s)	280, 1102
PmeI	GTTTAAAC	1 cut(s)	622
PpsI	GAGTC	2 cut(s)	280, 1102
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
PspN4I	GGNNCC	3 cut(s)	76, 82, 177
PspPI	GGNCC	2 cut(s)	81, 632
PspPPI	RGGWCCY	1 cut(s)	632
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	4 cut(s)	262, 292, 454, 957
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	3 cut(s)	367, 470, 531
SaqAI	TTAA	8 cut(s)	606, 621, 696, 902, 909, 993, 1025, 1251
SatI	GCNGC	6 cut(s)	27, 347, 356, 780, 801, 810
Sau96I	GGNCC	2 cut(s)	81, 632
SchI	GAGTC	2 cut(s)	280, 1103
ScrFI	CCNGG	5 cut(s)	42, 59, 79, 98, 1031
SduI	GDGCHC	2 cut(s)	23, 426
SfaNI	GCATC	2 cut(s)	107, 359
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	81, 632
SmiMI	CAYNNNNRTG	3 cut(s)	367, 470, 531
SmlI	CTYRAG	5 cut(s)	121, 254, 946, 961, 1168
SmoI	CTYRAG	5 cut(s)	121, 254, 946, 961, 1168
Sse9I	AATT	5 cut(s)	88, 196, 215, 664, 929
SsiI	CCGC	5 cut(s)	5, 26, 29, 596, 812
SspMI	CTAG	2 cut(s)	593, 1044
StyD4I	CCNGG	5 cut(s)	40, 57, 77, 96, 1029
StyI	CCWWGG	4 cut(s)	465, 504, 577, 1011
TaaI	ACNGT	5 cut(s)	150, 206, 247, 611, 1272
TaiI	ACGT	2 cut(s)	1228, 1233
TaqI	TCGA	4 cut(s)	135, 417, 1133, 1200
TasI	AATT	5 cut(s)	88, 196, 215, 664, 929
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	5 cut(s)	37, 490, 539, 651, 676
Tru1I	TTAA	8 cut(s)	606, 621, 696, 902, 909, 993, 1025, 1251
Tru9I	TTAA	8 cut(s)	606, 621, 696, 902, 909, 993, 1025, 1251
TscAI	CASTG	6 cut(s)	252, 369, 431, 678, 1088, 1200
TseFI	GTSAC	1 cut(s)	1276
TseI	GCWGC	5 cut(s)	346, 355, 779, 800, 809
Tsp45I	GTSAC	1 cut(s)	1276
TspDTI	ATGAA	7 cut(s)	287, 488, 503, 566, 935, 1151, 1291
TspRI	CASTG	6 cut(s)	252, 369, 431, 678, 1088, 1200
VpaK11BI	GGWCC	2 cut(s)	81, 632
XapI	RAATTY	3 cut(s)	88, 215, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	2 cut(s)	593, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.