Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8082684.1

Orthogroup ID

OG0008639

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8082684.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

aatcggaagcaacttgctgctgaagaggctctacagattttggtgccagagcatggtaagggacaggttgcttataacacaagcaacgtaaacaatttccaaccatcgaattacccccggaattctcccattaatgagatgagcaggtcatcagtcctagcaaacgatctccatcgttcaaagccccttctaaggccaaacgtttcactgcgagatgtacttagcaggaaacaggttcttcccgaagattttgttccgaaaaaggaattggatcgcggccatgctgagacacatagagtggctctgagtgaaatgcttcatgcactgagggaggatctgacatgtccttcaaaagttgagcagaaagatgggaatgatcgacagaggaagaagtttggtttcatccagatttcacttccattgtcaaggccaagtaagaaaaagatgcatacttcgaacgggaatggggcacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

158

Amino Acids

17.88

Weight (kDa)

9.94

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40480 AT3G56270
fragaria_vesca	FvH4_7g25600 FvH4_7g25600
malus_domestica	MD01G1163200.v1.1 MD07G1231200.v1.1
prunus_persica	Prupe.2G261200_v2.0.a1 Prupe.2G261200_v2.0.a1
pyrus_communis	pycom01g17780 pycom07g20910
rosa_chinensis	RchiOBHm_Chr1g0371731
rosa_laevigata	RLG00000026947
rosa_multiflora	Rmu_co8082684.1_g000001 Rmu_co8220228.1_g000001 Rmu_sc0001755.1_g000055 Rmu_sc0019360.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285490
rosa_rugosa	Rorug01G0365800
rosa_samantha	Rh1AG375900 Rh1BG339300 Rh1CG352400 Rh1DG370400
rosa_wichuraiana	Rw1G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	276
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	279, 342
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	53, 192
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	180, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	279, 342
AoxI	GGCC	3 cut(s)	194, 277, 428
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	121
AseI	ATTAAT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	3 cut(s)	112, 180, 362
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	18, 277
BlsI	GCNGC	2 cut(s)	19, 278
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 192
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	53, 192
BseMII	CTCAG	3 cut(s)	276, 296, 317
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	196, 279, 430
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	53, 192
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	196, 279, 430
Bsp119I	TTCGAA	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	166, 271, 334, 376
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	3 cut(s)	196, 279, 430
BspCNI	CTCAG	3 cut(s)	277, 297, 318
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	279, 342
BspT104I	TTCGAA	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	166, 271, 334, 376
Bst6I	CTCTTC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	455
BstDEI	CTNAG	5 cut(s)	191, 221, 285, 305, 326
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	4 cut(s)	169, 274, 337, 379
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	166, 271, 334, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	196, 279, 430
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	206, 323
BveI	ACCTGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	4 cut(s)	53, 281, 320, 342
CviJI	RGCY	6 cut(s)	29, 184, 196, 279, 302, 430
CviKI_1	RGCY	6 cut(s)	29, 184, 196, 279, 302, 430
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	5 cut(s)	191, 221, 285, 305, 326
DpnI	GATC	4 cut(s)	168, 273, 336, 378
DpnII	GATC	4 cut(s)	166, 271, 334, 376
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	450
FaeI	CATG	4 cut(s)	56, 284, 323, 345
FaiI	YATR	7 cut(s)	54, 75, 282, 294, 321, 343, 450
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	52, 280, 319, 341
Fnu4HI	GCNGC	2 cut(s)	18, 277
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	2 cut(s)	18, 277
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	18, 277
HaeIII	GGCC	3 cut(s)	196, 279, 430
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	4 cut(s)	56, 284, 323, 345
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	6, 258, 306, 339
Hpy188III	TCNNGA	2 cut(s)	242, 406
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	197, 357
HpyCH4IV	ACGT	2 cut(s)	87, 201
HpyCH4V	TGCA	2 cut(s)	323, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	5 cut(s)	191, 221, 285, 305, 326
HpySE526I	ACGT	2 cut(s)	87, 201
Hsp92II	CATG	4 cut(s)	56, 284, 323, 345
Kzo9I	GATC	4 cut(s)	166, 271, 334, 376
LpnPI	CCDG	7 cut(s)	50, 60, 130, 131, 211, 218, 419
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	87, 201
MalI	GATC	4 cut(s)	168, 273, 336, 378
MboI	GATC	4 cut(s)	166, 271, 334, 376
MboII	GAAGA	4 cut(s)	35, 230, 257, 400
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	4 cut(s)	94, 109, 121, 266
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	19, 321, 325, 378
Mph1103I	ATGCAT	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	166, 271, 334, 376
NlaIII	CATG	4 cut(s)	56, 284, 323, 345
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	455
PciI	ACATGT	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	19, 278
PscI	ACATGT	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	18, 277
Sau3AI	GATC	4 cut(s)	166, 271, 334, 376
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	5 cut(s)	69, 90, 149, 204, 237
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	455
Sse9I	AATT	4 cut(s)	94, 109, 121, 266
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	116
TaiI	ACGT	2 cut(s)	90, 204
TaqI	TCGA	3 cut(s)	107, 379, 455
TasI	AATT	4 cut(s)	94, 109, 121, 266
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	213, 330
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	308, 391
TspRI	CASTG	2 cut(s)	213, 330
Van91I	CCANNNNNTGG	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.