Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220228.1

Orthogroup ID

OG0008639

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 739

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

aatgggggtgaagagtttgacttaaagaaagttgaggaacaagcagcagagttggagaaggatctgattgtaaaagagctagagacgcttgatgttttagaagaactagcaacaacaaagagaattgtggaggagctaaagagacagctgcagaaagaagcattgaaatgcttgacagttccaccggagtaccattcagaagcagagcacatgtcaccatcccctgccatcaaagagatgaacaaggaaaataatttcatgatgatgggaaattcaagtcccaatcacccttcttcctcacctgatctgatcttgatggagctgaaacaagcgaaaatgaacctcggtaacacgatcaatgatctaggggtgattcaatcttctgttgaatctttgaacaagaagatgcaaaacgagaaaattttgcttgaaaaaacccgagagaggttgacttcacagtttgcgggggtgtcatcactagaggaggagatgaatagcataaaagtgaagacaagagcaactgatgatgcagaaaccaagcctaagaaaatggccaaagcttcgaattttgaggccaaaaccagcatgaagaagactgctgaaatgaggtgggttgcggcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

207

Amino Acids

23.34

Weight (kDa)

5.48

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40480 AT3G56270
fragaria_vesca	FvH4_7g25600 FvH4_7g25600
malus_domestica	MD01G1163200.v1.1 MD07G1231200.v1.1
prunus_persica	Prupe.2G261200_v2.0.a1 Prupe.2G261200_v2.0.a1
pyrus_communis	pycom01g17780 pycom07g20910
rosa_chinensis	RchiOBHm_Chr1g0371731
rosa_laevigata	RLG00000026947
rosa_multiflora	Rmu_co8082684.1_g000001 Rmu_co8220228.1_g000001 Rmu_sc0001755.1_g000055 Rmu_sc0019360.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285490
rosa_rugosa	Rorug01G0365800
rosa_samantha	Rh1AG375900 Rh1BG339300 Rh1CG352400 Rh1DG370400
rosa_wichuraiana	Rw1G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	464, 617
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	3 cut(s)	271, 420, 565
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	6 cut(s)	166, 276, 377, 389, 397, 431
AluBI	AGCT	5 cut(s)	79, 136, 148, 322, 560
AluI	AGCT	5 cut(s)	79, 136, 148, 322, 560
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	77, 136
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	2 cut(s)	552, 573
ApeKI	GCWGC	2 cut(s)	44, 148
ApoI	RAATTY	3 cut(s)	271, 420, 565
AsuHPI	GGTGA	5 cut(s)	20, 207, 278, 291, 382
AsuII	TTCGAA	1 cut(s)	563
AvaI	CYCGRG	1 cut(s)	438
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BalI	TGGCCA	1 cut(s)	554
BbsI	GAAGAC	2 cut(s)	515, 599
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	56, 135
BccI	CCATC	4 cut(s)	226, 236, 259, 310
BcoDI	GTCTC	2 cut(s)	77, 136
BfaI	CTAG	4 cut(s)	80, 107, 365, 479
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	45, 149, 618
BlsI	GCNGC	3 cut(s)	46, 150, 619
BmeT110I	CYCGRG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	396, 517
BpiI	GAAGAC	2 cut(s)	515, 599
Bpu14I	TTCGAA	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseRI	GAGGAG	3 cut(s)	146, 497, 500
BseXI	GCAGC	2 cut(s)	56, 135
BshFI	GGCC	2 cut(s)	554, 575
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	77, 136
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	554, 575
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	5 cut(s)	61, 304, 309, 354, 361
BspACI	CCGC	2 cut(s)	464, 617
BspANI	GGCC	2 cut(s)	554, 575
BspHI	TCATGA	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	5 cut(s)	61, 304, 309, 354, 361
Bst4CI	ACNGT	2 cut(s)	178, 459
Bst6I	CTCTTC	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	563
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	5 cut(s)	64, 307, 312, 357, 364
BstMAI	GTCTC	2 cut(s)	77, 136
BstMBI	GATC	5 cut(s)	61, 304, 309, 354, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	56, 135
BstV2I	GAAGAC	2 cut(s)	515, 599
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	554, 575
BtsCI	GGATG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	258
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	211, 259, 586
CviJI	RGCY	8 cut(s)	79, 136, 148, 322, 541, 554, 560, 575
CviKI_1	RGCY	8 cut(s)	79, 136, 148, 322, 541, 554, 560, 575
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	63, 306, 311, 356, 363
DpnII	GATC	5 cut(s)	61, 304, 309, 354, 361
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	214, 262, 589
FaiI	YATR	4 cut(s)	212, 260, 500, 587
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	210, 258, 585
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	45, 149, 618
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	45, 149, 618
FspBI	CTAG	4 cut(s)	80, 107, 365, 479
GluI	GCNGC	3 cut(s)	45, 149, 618
HaeIII	GGCC	2 cut(s)	554, 575
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	214, 262, 589
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	2 cut(s)	373, 389
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	5 cut(s)	20, 207, 278, 291, 382
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	3 cut(s)	66, 199, 309
Hpy188III	TCNNGA	2 cut(s)	259, 313
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	52, 300
HpyCH4III	ACNGT	2 cut(s)	178, 459
HpyCH4V	TGCA	3 cut(s)	151, 409, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	3 cut(s)	214, 262, 589
Kzo9I	GATC	5 cut(s)	61, 304, 309, 354, 361
LmnI	GCTCC	2 cut(s)	133, 319
LpnPI	CCDG	4 cut(s)	198, 237, 315, 595
Lsp1109I	GCAGC	2 cut(s)	56, 135
LweI	GCATC	2 cut(s)	396, 517
MaeI	CTAG	4 cut(s)	80, 107, 365, 479
MaeIII	GTNAC	2 cut(s)	213, 347
MalI	GATC	5 cut(s)	63, 306, 311, 356, 363
MboI	GATC	5 cut(s)	61, 304, 309, 354, 361
MboII	GAAGA	8 cut(s)	23, 113, 285, 372, 415, 520, 601, 604
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	5 cut(s)	123, 253, 271, 420, 565
MluNI	TGGCCA	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	28, 124, 307, 353, 438, 475, 478, 565, 600
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	3 cut(s)	166, 263, 503
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	5 cut(s)	61, 304, 309, 354, 361
NlaIII	CATG	3 cut(s)	214, 262, 589
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	563
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	373, 389
PkrI	GCNGC	3 cut(s)	46, 150, 619
PscI	ACATGT	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	3 cut(s)	166, 263, 503
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	45, 149, 618
Sau3AI	GATC	5 cut(s)	61, 304, 309, 354, 361
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	9 cut(s)	81, 138, 150, 304, 324, 345, 449, 562, 611
SfaNI	GCATC	2 cut(s)	396, 517
SfcI	CTRYAG	1 cut(s)	149
SfuI	TTCGAA	1 cut(s)	563
SmiMI	CAYNNNNRTG	3 cut(s)	166, 263, 503
Sse9I	AATT	5 cut(s)	123, 253, 271, 420, 565
SsiI	CCGC	2 cut(s)	464, 617
SspMI	CTAG	4 cut(s)	80, 107, 365, 479
TaaI	ACNGT	2 cut(s)	178, 459
TaqI	TCGA	1 cut(s)	563
TasI	AATT	5 cut(s)	123, 253, 271, 420, 565
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	2 cut(s)	373, 389
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	2 cut(s)	44, 148
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	5 cut(s)	247, 254, 353, 506, 602
XapI	RAATTY	3 cut(s)	271, 420, 565
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	4 cut(s)	80, 107, 365, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.