Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008639

Physical Location & Seq

Genomic Coordinates Forward (+)

48099897 .. 48100550

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATTTTTGACTTGGGTGGTGGTACTTCAGATGTTTCTCTGCTTAGCATAAGTACTTCTGGTGTCTTTGAAGTGAAGGCAACTGCTGGAGATACTCACCTTGGTGGTGAAGACTTCGATAGCAGAATGGTGTACTTTTGTGTAGAGGAATTCAACCGGAAGCATAAAGTGGATGTTAGTGGAAACTCCAGGGCTATTAGGAGGTTAAGAAATGCCTGTGAGAAGGCAAAGAGGAGGCTTTCCTATGCCACTACGACTGATATTGAAATTGACTGTTTGCATCATGCTACTGATTTCTTTTTAAGTTTTAGCCGTGCCAAATTCGAAGAACTCAACATGGATTTCTTCATCAAGTGCATGGACCCTGTGGACAAGTGTTTGAAGGATGCGAAGATGGACGTGAGCTGTGTCCATAATGTTGTCCTTGCTGGTGGTTCGTCTAGAATTCCGAAGGTGCAGCAGCTATTGCAGGATCTGTTCAAGGGGAAGCAATTGTGCAAAAGCGTTAATCCTGATGAAGCAGTGGCATATGGTGCTGCTGTTCAAGCTGCAGCTTTGAGTGGGAATGAAAATGGGATGCTTCAAGGCTTTGCTCTCTTGGATGTCACCCCACTCTCACTTGGCATTGAGACTCGAGACATTGCAATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

217

Amino Acids

23.77

Weight (kDa)

5.74

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MreB_Mbl	PF06723	1 - 182	3.7e-06	MreB/Mbl protein
HSP70	PF00012	2 - 213	4.9e-80	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40480 AT3G56270
fragaria_vesca	FvH4_7g25600 FvH4_7g25600
malus_domestica	MD01G1163200.v1.1 MD07G1231200.v1.1
prunus_persica	Prupe.2G261200_v2.0.a1 Prupe.2G261200_v2.0.a1
pyrus_communis	pycom01g17780 pycom07g20910
rosa_chinensis	RchiOBHm_Chr1g0371731
rosa_laevigata	RLG00000026947
rosa_multiflora	Rmu_co8082684.1_g000001 Rmu_co8220228.1_g000001 Rmu_sc0001755.1_g000055 Rmu_sc0019360.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285490
rosa_rugosa	Rorug01G0365800
rosa_samantha	Rh1AG375900 Rh1BG339300 Rh1CG352400 Rh1DG370400
rosa_wichuraiana	Rw1G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	149, 320, 444
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	25, 55, 134
AgsI	TTSAA	7 cut(s)	71, 154, 266, 382, 481, 545, 584
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	405, 463, 548, 554
AluI	AGCT	4 cut(s)	405, 463, 548, 554
Alw26I	GTCTC	2 cut(s)	623, 630
AlwI	GGATC	1 cut(s)	480
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	633
ApeKI	GCWGC	5 cut(s)	457, 460, 536, 548, 551
ApoI	RAATTY	3 cut(s)	149, 320, 444
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	89, 119, 598
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	5 cut(s)	469, 472, 523, 535, 563
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	623, 630
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	5 cut(s)	458, 461, 537, 549, 552
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	5 cut(s)	459, 462, 538, 550, 553
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	633
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	3 cut(s)	289, 376, 567
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	108, 172
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	100, 189
BsaWI	WCCGGW	1 cut(s)	156
Bse3DI	GCAATG	2 cut(s)	639, 651
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	100, 189
BseGI	GGATG	4 cut(s)	178, 391, 582, 607
BseMI	GCAATG	2 cut(s)	639, 651
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	5 cut(s)	469, 472, 523, 535, 563
BsgI	GTGCAG	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	623, 630
BsoBI	CYCGRG	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	639, 651
BssECI	CCNNGG	2 cut(s)	100, 189
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	275
BstAPI	GCANNNNNTGC	2 cut(s)	466, 533
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	4 cut(s)	178, 391, 582, 607
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	623, 630
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 533, 545
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	469, 472, 523, 535, 563
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	178, 391, 582, 607
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	24, 54, 133
CviAII	CATG	3 cut(s)	284, 337, 358
CviJI	RGCY	8 cut(s)	194, 238, 312, 405, 463, 548, 554, 588
CviKI_1	RGCY	8 cut(s)	194, 238, 312, 405, 463, 548, 554, 588
CviQI	GTAC	3 cut(s)	24, 54, 133
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	633
EcoRI	GAATTC	2 cut(s)	149, 444
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	287, 340, 361
FaiI	YATR	9 cut(s)	50, 165, 246, 285, 338, 359, 414, 529, 531
FatI	CATG	3 cut(s)	283, 336, 357
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	5 cut(s)	458, 461, 537, 549, 552
FokI	GGATG	4 cut(s)	185, 398, 589, 614
Fsp4HI	GCNGC	5 cut(s)	458, 461, 537, 549, 552
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	5 cut(s)	458, 461, 537, 549, 552
GsuI	CTGGAG	2 cut(s)	108, 172
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	3 cut(s)	287, 340, 361
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	3 cut(s)	89, 119, 598
Hpy166II	GTNNAC	2 cut(s)	133, 370
Hpy188I	TCNGA	2 cut(s)	31, 450
Hpy188III	TCNNGA	3 cut(s)	441, 512, 635
Hpy8I	GTNNAC	2 cut(s)	133, 370
HpyAV	CCTTC	4 cut(s)	70, 217, 376, 445
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	7 cut(s)	280, 357, 457, 469, 498, 551, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 533, 545
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	287, 340, 361
Kzo9I	GATC	1 cut(s)	472
Lsp1109I	GCAGC	5 cut(s)	469, 472, 523, 535, 563
LweI	GCATC	3 cut(s)	289, 376, 567
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	4 cut(s)	122, 337, 338, 403
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	5 cut(s)	149, 267, 320, 444, 491
MlyI	GAGTC	1 cut(s)	625
MnlI	CCTC	4 cut(s)	139, 195, 225, 228
MseI	TTAA	3 cut(s)	206, 302, 507
MslI	CAYNNNNRTG	2 cut(s)	102, 644
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	466, 533, 545
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	287, 340, 361
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	324
OliI	CACNNNNGTG	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	633
PkrI	GCNGC	5 cut(s)	459, 462, 538, 550, 553
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	3 cut(s)	25, 55, 134
RsaNI	GTAC	3 cut(s)	24, 54, 133
RseI	CAYNNNNRTG	2 cut(s)	102, 644
SaqAI	TTAA	3 cut(s)	206, 302, 507
SatI	GCNGC	5 cut(s)	458, 461, 537, 549, 552
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	8 cut(s)	102, 206, 402, 407, 456, 465, 550, 556
SfaNI	GCATC	3 cut(s)	289, 376, 567
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	2 cut(s)	102, 644
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	5 cut(s)	149, 267, 320, 444, 491
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	117, 324, 634
TasI	AATT	5 cut(s)	149, 267, 320, 444, 491
TatI	WGTACW	2 cut(s)	53, 132
Tru1I	TTAA	3 cut(s)	206, 302, 507
Tru9I	TTAA	3 cut(s)	206, 302, 507
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	5 cut(s)	457, 460, 536, 548, 551
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	3 cut(s)	337, 531, 582
TspRI	CASTG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	149, 320, 444
XbaI	TCTAGA	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	633
XspI	CTAG	1 cut(s)	441
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.