AT3G56740

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015963
Physical Location & Seq
Forward (+)
21015371 .. 21018157
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56740.1

Sequence Viewer

Length: 882 bp
ATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTAACGAAAGCCTTCGTTATTACGAGCGCTCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGTTCTTCTAAGCTCGGTTTGTCTTACCAGGACATTTTTGAGAAATTTCGGATATGGAAGTTAATCATGTCCACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGCTATACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTCGGTTTTTATCTTGTTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACCACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTCTACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAGTCATTCATATATCTCGCAGGAGTGCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTTCCTGGAATTTGCGGCATAATTGCGGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGCAAGGCAAAGTTCCCTGAGTTTGTGGCTTCGTTCTTCTCGCGGCTTTCTTTTCCCTCTTTCGGTAACTCTCCTCCTCCAGCACCAAGCAGGAACATCGTTGGGACTATATCACCTAACACAGGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCGTTGCCCTCAAGTGTGGAGCCATCTGAGGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCGCTTGTGCACGCCAGGAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAGTCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0032182 GO:0043130
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DER1 Rhomboid UBA

Protein Analysis

293

Amino Acids

32.38

Weight (kDa)

9.95

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 49 - 186 5e-07 Rhomboid domain
UBA PF00627 251 - 287 1.8e-13 UBA/TS-N domain
UBA_7 PF22562 253 - 291 5.3e-09 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56740
fragaria_vesca FvH4_6g25340
malus_domestica MD12G1096200.v1.1 MD14G1089500.v1.1
prunus_persica Prupe.7G034400_v2.0.a1
pyrus_communis pycom12g08520 pycom14g07930
rosa_chinensis RchiOBHm_Chr2g0125741
rosa_laevigata RLG00000018878
rosa_multiflora Rmu_ssc0000055.1_g000017
rosa_roxburghii Rroxscaffold_2G00117780
rosa_rugosa Rorug02G0258800
rosa_samantha Rh2BG325000 Rh2CG306900
rosa_wichuraiana Rw2G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 432, 619
AciI CCGC 6 cut(s) 9, 531, 542, 577, 619, 846
AclWI GGATC 3 cut(s) 82, 95, 504
AcsI RAATTY 2 cut(s) 140, 525
AcyI GRCGYC 1 cut(s) 703
AfaI GTAC 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 638, 698
AgsI TTSAA 2 cut(s) 420, 562
AjnI CCWGG 3 cut(s) 123, 520, 827
AluBI AGCT 3 cut(s) 109, 487, 728
AluI AGCT 3 cut(s) 109, 487, 728
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 2 cut(s) 235, 802
Alw44I GTGCAC 1 cut(s) 821
AlwI GGATC 3 cut(s) 82, 95, 504
AlwNI CAGNNNCTG 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 305
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 370
ApaLI GTGCAC 1 cut(s) 821
ApeKI GCWGC 2 cut(s) 484, 803
ApoI RAATTY 2 cut(s) 140, 525
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 65, 817
AspS9I GGNCC 2 cut(s) 11, 362
AsuHPI GGTGA 1 cut(s) 681
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 11, 362
BaeGI GKGCMC 1 cut(s) 825
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BamHI GGATCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 496, 815
BccI CCATC 2 cut(s) 521, 760
BceAI ACGGC 2 cut(s) 22, 385
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 3 cut(s) 125, 522, 829
BcoDI GTCTC 2 cut(s) 235, 802
BfoI RGCGCY 2 cut(s) 66, 818
BglII AGATCT 1 cut(s) 716
BisI GCNGC 5 cut(s) 485, 532, 620, 804, 846
BlsI GCNGC 5 cut(s) 486, 533, 621, 805, 847
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 3 cut(s) 125, 522, 829
Bme18I GGWCC 2 cut(s) 11, 362
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 11, 362
BmiI GGNNCC 4 cut(s) 13, 89, 547, 750
BmrFI CCNGG 3 cut(s) 125, 522, 829
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 724
BsaHI GRCGYC 1 cut(s) 703
BsaJI CCNNGG 2 cut(s) 91, 568
BsaWI WCCGGW 2 cut(s) 17, 34
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 698
BseBI CCWGG 3 cut(s) 125, 522, 829
BseDI CCNNGG 2 cut(s) 91, 568
BseGI GGATG 3 cut(s) 564, 573, 855
BseLI CCNNNNNNNGG 2 cut(s) 638, 698
BseMII CTCAG 4 cut(s) 297, 585, 734, 747
BseRI GAGGAG 3 cut(s) 172, 639, 642
BseSI GKGCMC 1 cut(s) 825
BseXI GCAGC 2 cut(s) 496, 815
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 2 cut(s) 432, 619
BshFI GGCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 18, 35
BslFI GGGAC 3 cut(s) 301, 694, 859
BslI CCNNNNNNNGG 2 cut(s) 638, 698
BsmAI GTCTC 2 cut(s) 235, 802
BsmFI GGGAC 3 cut(s) 301, 694, 859
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 3 cut(s) 87, 509, 716
BspACI CCGC 6 cut(s) 9, 531, 542, 577, 619, 846
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 4 cut(s) 296, 586, 733, 748
BspFNI CGCG 2 cut(s) 432, 619
BspLI GGNNCC 4 cut(s) 13, 89, 547, 750
BspPI GGATC 3 cut(s) 82, 95, 504
BssECI CCNNGG 2 cut(s) 91, 568
BssMI GATC 3 cut(s) 87, 509, 716
BssNI GRCGYC 1 cut(s) 703
BssT1I CCWWGG 2 cut(s) 91, 568
Bst2UI CCWGG 3 cut(s) 125, 522, 829
Bst4CI ACNGT 3 cut(s) 76, 292, 873
BstACI GRCGYC 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 726, 825
BstDEI CTNAG 5 cut(s) 105, 283, 594, 720, 756
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 3 cut(s) 564, 573, 855
BstFNI CGCG 2 cut(s) 432, 619
BstH2I RGCGCY 2 cut(s) 66, 818
BstHHI GCGC 2 cut(s) 65, 817
BstKTI GATC 3 cut(s) 90, 512, 719
BstMAI GTCTC 2 cut(s) 235, 802
BstMBI GATC 3 cut(s) 87, 509, 716
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 3 cut(s) 125, 522, 829
BstSCI CCNGG 3 cut(s) 123, 520, 827
BstSLI GKGCMC 1 cut(s) 825
BstUI CGCG 2 cut(s) 432, 619
BstV1I GCAGC 2 cut(s) 496, 815
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 3 cut(s) 87, 509, 716
BstYI RGATCY 3 cut(s) 87, 509, 716
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 3 cut(s) 564, 573, 855
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 72, 323
Cac8I GCNNGC 2 cut(s) 726, 825
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 2 cut(s) 65, 817
Cfr13I GGNCC 2 cut(s) 11, 362
CseI GACGC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 5 cut(s) 105, 283, 594, 720, 756
DpnI GATC 3 cut(s) 89, 511, 718
DpnII GATC 3 cut(s) 87, 509, 716
Eco130I CCWWGG 2 cut(s) 91, 568
Eco47I GGWCC 2 cut(s) 11, 362
Eco47III AGCGCT 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoRII CCWGG 3 cut(s) 123, 520, 827
EcoT14I CCWWGG 2 cut(s) 91, 568
ErhI CCWWGG 2 cut(s) 91, 568
FaeI CATG 1 cut(s) 166
FaqI GGGAC 3 cut(s) 301, 694, 859
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 5 cut(s) 485, 532, 620, 804, 846
FokI GGATG 3 cut(s) 551, 560, 842
Fsp4HI GCNGC 5 cut(s) 485, 532, 620, 804, 846
GlaI GCGC 2 cut(s) 64, 816
GluI GCNGC 5 cut(s) 485, 532, 620, 804, 846
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 2 cut(s) 66, 818
HaeIII GGCC 1 cut(s) 372
HapII CCGG 2 cut(s) 18, 35
HgaI GACGC 1 cut(s) 692
HhaI GCGC 2 cut(s) 65, 817
Hin1I GRCGYC 1 cut(s) 703
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 63, 815
HinP1I GCGC 2 cut(s) 63, 815
HincII GTYRAC 2 cut(s) 445, 841
HindII GTYRAC 2 cut(s) 445, 841
HinfI GANTC 1 cut(s) 789
HpaII CCGG 2 cut(s) 18, 35
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 4 cut(s) 168, 445, 823, 841
Hpy188I TCNGA 5 cut(s) 147, 206, 230, 454, 757
Hpy188III TCNNGA 3 cut(s) 85, 360, 863
Hpy8I GTNNAC 4 cut(s) 168, 445, 823, 841
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 4 cut(s) 58, 187, 406, 869
HpyCH4III ACNGT 3 cut(s) 76, 292, 873
HpyCH4V TGCA 2 cut(s) 484, 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 5 cut(s) 105, 283, 594, 720, 756
Hsp92I GRCGYC 1 cut(s) 703
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 63, 815
Kzo9I GATC 3 cut(s) 87, 509, 716
LmnI GCTCC 3 cut(s) 37, 733, 748
Lsp1109I GCAGC 2 cut(s) 496, 815
LweI GCATC 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 37, 641
MalI GATC 3 cut(s) 89, 511, 718
MboI GATC 3 cut(s) 87, 509, 716
MboII GAAGA 5 cut(s) 70, 73, 93, 489, 604
MflI RGATCY 3 cut(s) 87, 509, 716
MhlI GDGCHC 1 cut(s) 825
MluCI AATT 4 cut(s) 140, 194, 525, 537
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 158, 330
MspI CCGG 2 cut(s) 18, 35
MspR9I CCNGG 3 cut(s) 125, 522, 829
MvaI CCWGG 3 cut(s) 125, 522, 829
MvnI CGCG 2 cut(s) 432, 619
MwoI GCNNNNNNNGC 1 cut(s) 812
NdeII GATC 3 cut(s) 87, 509, 716
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 4 cut(s) 13, 89, 547, 750
PaeR7I CTCGAG 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 789
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 5 cut(s) 486, 533, 621, 805, 847
Psp6I CCWGG 3 cut(s) 123, 520, 827
PspGI CCWGG 3 cut(s) 123, 520, 827
PspN4I GGNNCC 4 cut(s) 13, 89, 547, 750
PspPI GGNCC 2 cut(s) 11, 362
PspXI VCTCGAGB 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 3 cut(s) 87, 509, 716
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 158, 330
SatI GCNGC 5 cut(s) 485, 532, 620, 804, 846
Sau3AI GATC 3 cut(s) 87, 509, 716
Sau96I GGNCC 2 cut(s) 11, 362
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 125, 522, 829
SduI GDGCHC 1 cut(s) 825
SetI ASST 8 cut(s) 97, 111, 312, 359, 428, 489, 694, 730
SfaNI GCATC 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 2 cut(s) 11, 362
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 305, 739
SmoI CTYRAG 2 cut(s) 305, 739
Sse9I AATT 4 cut(s) 140, 194, 525, 537
SsiI CCGC 6 cut(s) 9, 531, 542, 577, 619, 846
StyD4I CCNGG 3 cut(s) 123, 520, 827
StyI CCWWGG 2 cut(s) 91, 568
TaaI ACNGT 3 cut(s) 76, 292, 873
TaqI TCGA 4 cut(s) 306, 706, 792, 864
TasI AATT 4 cut(s) 140, 194, 525, 537
TatI WGTACW 1 cut(s) 261
TauI GCSGC 3 cut(s) 534, 622, 848
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 2 cut(s) 158, 330
Tru9I TTAA 2 cut(s) 158, 330
TscAI CASTG 2 cut(s) 79, 330
TseI GCWGC 2 cut(s) 484, 803
TspDTI ATGAA 2 cut(s) 17, 454
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 2 cut(s) 79, 330
VneI GTGCAC 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 11, 362
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 2 cut(s) 140, 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.