Rroxscaffold_2G00117780

Ubiquitin-associated domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015963
Physical Location & Seq
Forward (+)
48410221 .. 48416253
6033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117780.1

Sequence Viewer

Length: 879 bp
ATGAACGGCGGCCCATCGGGTTTCCACAATGCTCCTGTTACCAGAGCCTTCGTTATTTCCAGCGCTCTCTTCACCGTATTCTTCGGGATCCAGGGCCGTTCATCCAAGCTTGGATTATCCTATCTGGATATTTTTGGGAAGTTTCGCCTTTGGAAGTTAATCGTGTCAGTTTTTGCCTTTTCATCTACACCAGAACTGATGTTTGGACTGTATCTGCTCTACTACTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAGTATTCGGTCTTTATCTTGTTCTCAGTGACAGCATCATTGCTCTTTGAGATCCTTGCGATAGCATTCCTTAAAGATCCTGCAGTAAACCTAGTGACATCGGGACCTTATGGTCTTATATTTGCATCGTTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGTTTTCGTGTGTTTGGCGTGCACTTCTCAGACAAGTCTTTTATATATCTAGCAGGCCTTCAGCTTCTTTTATCATCTTGGAAAAGATCAGTCTTACCAGGGATATGTGGCATCCTTTGTGGTTCCTTATATCATCTGAATGTCTTCTGTATCCGCAGAGCAAAGTTCCCAGAACTCATTGCATCTTTCTTTTCACGACTTTCCTTGCCAACTATGGGGACTCTGCCAGCAGCACCAACCAGAAATATTGCGGGAAGTGTACCATCATTCACAGCTCAGCAAGTGGAGAGAAATTATCCCTCTCCCATGTTGTCAACCACAGAGCCAACGGAGGACTCCATTGCTACCCTTGTTTCTATGGGTTTTGATAGGAACTCTGCCAGACAAGCACTAGTGCATGCTAGAAATGATGTCACGGCGGCAACAAACATCCTGTTAGAAGCACAGGCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DER1 Rhomboid UBA

Protein Analysis

292

Amino Acids

32.3

Weight (kDa)

9.67

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 49 - 187 3e-06 Rhomboid domain
UBA PF00627 251 - 286 1e-10 UBA/TS-N domain
UBA_7 PF22562 252 - 290 2.9e-08 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56740
fragaria_vesca FvH4_6g25340
malus_domestica MD12G1096200.v1.1 MD14G1089500.v1.1
prunus_persica Prupe.7G034400_v2.0.a1
pyrus_communis pycom12g08520 pycom14g07930
rosa_chinensis RchiOBHm_Chr2g0125741
rosa_laevigata RLG00000018878
rosa_multiflora Rmu_ssc0000055.1_g000017
rosa_roxburghii Rroxscaffold_2G00117780
rosa_rugosa Rorug02G0258800
rosa_samantha Rh2BG325000 Rh2CG306900
rosa_wichuraiana Rw2G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
AciI CCGC 4 cut(s) 9, 577, 674, 842
AclWI GGATC 4 cut(s) 82, 95, 304, 329
AcuI CTGAAG 2 cut(s) 211, 467
AfaI GTAC 2 cut(s) 393, 684
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 420
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 2 cut(s) 90, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 3 cut(s) 109, 487, 698
AluI AGCT 3 cut(s) 109, 487, 698
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 235
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 4 cut(s) 82, 95, 304, 329
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 4 cut(s) 10, 94, 478, 870
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 4 cut(s) 11, 94, 362, 871
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 665
BccI CCATC 2 cut(s) 22, 694
BceAI ACGGC 3 cut(s) 22, 81, 855
BciT130I CCWGG 2 cut(s) 92, 522
BciVI GTATCC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 4 cut(s) 350, 473, 815, 825
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 66
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 3 cut(s) 10, 654, 843
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 3 cut(s) 11, 655, 844
Bme1390I CCNGG 2 cut(s) 92, 522
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 4 cut(s) 11, 94, 362, 871
BmiI GGNNCC 4 cut(s) 89, 253, 363, 547
BmrFI CCNGG 2 cut(s) 92, 522
BmsI GCATC 4 cut(s) 302, 392, 543, 614
BpiI GAAGAC 1 cut(s) 559
Bpu1102I GCTNAGC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 91, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 3 cut(s) 296, 600, 762
BseBI CCWGG 2 cut(s) 92, 522
BseDI CCNNGG 2 cut(s) 91, 521
BseGI GGATG 3 cut(s) 101, 534, 852
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMI GCAATG 3 cut(s) 296, 600, 762
BseMII CTCAG 3 cut(s) 297, 465, 713
BseNI ACTGG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 1 cut(s) 665
BshFI GGCC 4 cut(s) 12, 96, 480, 872
BsiHKAI GWGCWC 1 cut(s) 447
BslFI GGGAC 2 cut(s) 375, 655
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 375, 655
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 4 cut(s) 12, 96, 480, 872
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 4 cut(s) 87, 309, 334, 509
Bsp1720I GCTNAGC 1 cut(s) 699
BspACI CCGC 4 cut(s) 9, 577, 674, 842
BspANI GGCC 4 cut(s) 12, 96, 480, 872
BspCNI CTCAG 3 cut(s) 296, 464, 712
BspLI GGNNCC 4 cut(s) 89, 253, 363, 547
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 4 cut(s) 82, 95, 304, 329
BsrDI GCAATG 3 cut(s) 296, 600, 762
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 91, 521
BssMI GATC 4 cut(s) 87, 309, 334, 509
Bst2UI CCWGG 2 cut(s) 92, 522
Bst4CI ACNGT 2 cut(s) 76, 210
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 4 cut(s) 443, 478, 651, 822
BstDEI CTNAG 3 cut(s) 283, 451, 699
BstF5I GGATG 3 cut(s) 101, 534, 852
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 4 cut(s) 90, 312, 337, 512
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 4 cut(s) 87, 309, 334, 509
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 2 cut(s) 92, 522
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 2 cut(s) 90, 520
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 665
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 3 cut(s) 87, 309, 334
BstYI RGATCY 3 cut(s) 87, 309, 334
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 12, 96, 480, 872
BtsCI GGATG 3 cut(s) 101, 534, 852
BtsIMutI CAGTG 2 cut(s) 291, 874
Cac8I GCNNGC 4 cut(s) 443, 478, 651, 822
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 11, 94, 362, 871
Csp6I GTAC 2 cut(s) 392, 683
CviAII CATG 2 cut(s) 730, 821
CviJI RGCY 9 cut(s) 12, 47, 96, 109, 480, 487, 698, 748, 872
CviKI_1 RGCY 9 cut(s) 12, 47, 96, 109, 480, 487, 698, 748, 872
CviQI GTAC 2 cut(s) 392, 683
DdeI CTNAG 3 cut(s) 283, 451, 699
DpnI GATC 4 cut(s) 89, 311, 336, 511
DpnII GATC 4 cut(s) 87, 309, 334, 509
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 211, 467
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 90, 520
FaeI CATG 2 cut(s) 733, 824
FaqI GGGAC 2 cut(s) 375, 655
FatI CATG 2 cut(s) 729, 820
FauI CCCGC 1 cut(s) 667
Fnu4HI GCNGC 3 cut(s) 10, 654, 843
FokI GGATG 3 cut(s) 88, 521, 839
Fsp4HI GCNGC 3 cut(s) 10, 654, 843
FspBI CTAG 4 cut(s) 350, 473, 815, 825
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 10, 654, 843
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 4 cut(s) 12, 96, 480, 872
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 733, 824
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 738
HindII GTYRAC 1 cut(s) 738
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 643, 758
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 4 cut(s) 346, 445, 683, 738
Hpy188I TCNGA 2 cut(s) 454, 561
Hpy188III TCNNGA 4 cut(s) 85, 125, 360, 618
Hpy8I GTNNAC 4 cut(s) 346, 445, 683, 738
HpyAV CCTTC 2 cut(s) 58, 491
HpyCH4III ACNGT 2 cut(s) 76, 210
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 5 cut(s) 341, 383, 445, 605, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 3 cut(s) 283, 451, 699
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 2 cut(s) 733, 824
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 4 cut(s) 87, 309, 334, 509
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 4 cut(s) 302, 392, 543, 614
MaeI CTAG 4 cut(s) 350, 473, 815, 825
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 4 cut(s) 37, 286, 352, 835
MalI GATC 4 cut(s) 89, 311, 336, 511
MboI GATC 4 cut(s) 87, 309, 334, 509
MboII GAAGA 3 cut(s) 61, 73, 559
MflI RGATCY 3 cut(s) 87, 309, 334
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 1 cut(s) 715
MlyI GAGTC 2 cut(s) 637, 752
MnlI CCTC 2 cut(s) 733, 748
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 2 cut(s) 158, 330
MslI CAYNNNNRTG 1 cut(s) 561
MspR9I CCNGG 2 cut(s) 92, 522
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 92, 522
MwoI GCNNNNNNNGC 1 cut(s) 809
NdeII GATC 4 cut(s) 87, 309, 334, 509
NlaIII CATG 2 cut(s) 733, 824
NlaIV GGNNCC 4 cut(s) 89, 253, 363, 547
NmuCI GTSAC 3 cut(s) 286, 352, 835
NspI RCATGY 1 cut(s) 824
PaeI GCATGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 480
PctI GAATGC 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 566
PkrI GCNGC 3 cut(s) 11, 655, 844
PleI GAGTC 2 cut(s) 637, 752
PpsI GAGTC 2 cut(s) 637, 752
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 90, 520
PspGI CCWGG 2 cut(s) 90, 520
PspN4I GGNNCC 4 cut(s) 89, 253, 363, 547
PspPI GGNCC 4 cut(s) 11, 94, 362, 871
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 3 cut(s) 87, 309, 334
RsaI GTAC 2 cut(s) 393, 684
RsaNI GTAC 2 cut(s) 392, 683
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 2 cut(s) 158, 330
SatI GCNGC 3 cut(s) 10, 654, 843
Sau3AI GATC 4 cut(s) 87, 309, 334, 509
Sau96I GGNCC 4 cut(s) 11, 94, 362, 871
SchI GAGTC 2 cut(s) 637, 752
ScrFI CCNGG 2 cut(s) 92, 522
SduI GDGCHC 1 cut(s) 447
SetI ASST 7 cut(s) 111, 253, 351, 367, 427, 489, 700
SfaNI GCATC 4 cut(s) 302, 392, 543, 614
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 561
SpeI ACTAGT 1 cut(s) 814
SphI GCATGC 1 cut(s) 824
Sse9I AATT 1 cut(s) 715
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 4 cut(s) 9, 577, 674, 842
SspI AATATT 1 cut(s) 670
SspMI CTAG 4 cut(s) 350, 473, 815, 825
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 90, 520
TaaI ACNGT 2 cut(s) 76, 210
TaiI ACGT 1 cut(s) 427
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 715
TauI GCSGC 2 cut(s) 12, 845
Tru1I TTAA 2 cut(s) 158, 330
Tru9I TTAA 2 cut(s) 158, 330
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 3 cut(s) 286, 352, 835
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 3 cut(s) 286, 352, 835
TspDTI ATGAA 3 cut(s) 17, 90, 171
TspGWI ACGGA 1 cut(s) 767
TspRI CASTG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 4 cut(s) 350, 473, 815, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.