Rh2CG306900

Ubiquitin-associated domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015963
Physical Location & Seq
Reverse (-)
36762951 .. 36768439
5489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG306900.1

Sequence Viewer

Length: 870 bp
ATGAACGGCGGCCCATCGGGTTTCCACAATGCTCCTGTTACCAGAGCCTTCGTTATTTCCAGTGCTCTCTTCACCGTATTCTTCGGGATCCAGGGCCGTTCAACCAAGCTTGGATTATCCTATCTGGATATTTTTGGGAAGTTTCGCCTTTGGAAGTTAATCGTGTCAGTTTTTGCCTTTTCATCTACACCAGAACTGATGTTTGGACTGTATCTGCTCTACTACTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAGTATTCGGTCTTTATCTTGTTCTCAGTGACGGCATCATTGCTCTTTGAGATCCTTGCGATAGCATTCCTTAAAGTAAACCTAGTGACATCGGGACCTTATGGTCTTATATTTGCATCGTTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGTTTTCGCGTGTTTGGCGTGCACTTCTCAGACAAGTCTTTTATATATCTAGCAGGCCTTCAGCTTCTTTTATCATCTTGGAAAAGATCAGTCTTACCAGGGATATGTGGCATCCTTTGTGGTTCCTTATATCATCTGAATGTCTTCTGTATCCGCAAAGCAAAGTTCCCAGAAGTCATTGCATCTTTCTTTTCACGACTTTCCTTGCCAACTATGGGGAGTCTGCCAGCAGCACCAACCAGAAATATTGCGGGAAGTGTACCATCATTCACAGCTCAGCAAGTGGAGAGAAATTATCCCTCGCCCATGTTGTCTACCACAGAGCCAACGGAGGACTCCATTGCTACCCTTGTTTCTATGGGTTTTGATAGGAACTCTGCCAGACAAGCACTAGTGCATGCCAGAAATGATGTCACTGCGGCAACAAACATCCTGTTAGAAGCACAGGCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DER1 Rhomboid UBA

Protein Analysis

289

Amino Acids

31.97

Weight (kDa)

9.74

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 49 - 184 6.1e-06 Rhomboid domain
UBA PF00627 248 - 283 1e-10 UBA/TS-N domain
UBA_7 PF22562 249 - 287 2.9e-08 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56740
fragaria_vesca FvH4_6g25340
malus_domestica MD12G1096200.v1.1 MD14G1089500.v1.1
prunus_persica Prupe.7G034400_v2.0.a1
pyrus_communis pycom12g08520 pycom14g07930
rosa_chinensis RchiOBHm_Chr2g0125741
rosa_laevigata RLG00000018878
rosa_multiflora Rmu_ssc0000055.1_g000017
rosa_roxburghii Rroxscaffold_2G00117780
rosa_rugosa Rorug02G0258800
rosa_samantha Rh2BG325000 Rh2CG306900
rosa_wichuraiana Rw2G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 728
AccII CGCG 1 cut(s) 423
AciI CCGC 4 cut(s) 9, 568, 665, 833
AclWI GGATC 3 cut(s) 82, 95, 304
AcuI CTGAAG 2 cut(s) 211, 458
AfaI GTAC 2 cut(s) 384, 675
AfiI CCNNNNNNNGG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 102, 411
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 2 cut(s) 90, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 3 cut(s) 109, 478, 689
AluI AGCT 3 cut(s) 109, 478, 689
Alw21I GWGCWC 2 cut(s) 67, 438
Alw26I GTCTC 1 cut(s) 235
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 3 cut(s) 82, 95, 304
AoxI GGCC 4 cut(s) 10, 94, 469, 861
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 557
AspS9I GGNCC 4 cut(s) 11, 94, 353, 862
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 438
BamHI GGATCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 67, 438
BbvI GCAGC 1 cut(s) 656
BccI CCATC 2 cut(s) 22, 685
BceAI ACGGC 3 cut(s) 22, 81, 306
BciT130I CCWGG 2 cut(s) 92, 513
BciVI GTATCC 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 3 cut(s) 341, 464, 806
BfuI GTATCC 1 cut(s) 575
BisI GCNGC 3 cut(s) 10, 645, 834
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 3 cut(s) 11, 646, 835
Bme1390I CCNGG 2 cut(s) 92, 513
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 4 cut(s) 11, 94, 353, 862
BmiI GGNNCC 4 cut(s) 89, 253, 354, 538
BmrFI CCNGG 2 cut(s) 92, 513
BmsI GCATC 4 cut(s) 302, 383, 534, 605
BpiI GAAGAC 1 cut(s) 550
Bpu1102I GCTNAGC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 91, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 2 cut(s) 60, 404
Bse3DI GCAATG 3 cut(s) 296, 591, 753
BseBI CCWGG 2 cut(s) 92, 513
BseDI CCNNGG 2 cut(s) 91, 512
BseGI GGATG 2 cut(s) 525, 843
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMI GCAATG 3 cut(s) 296, 591, 753
BseMII CTCAG 3 cut(s) 297, 456, 704
BseNI ACTGG 2 cut(s) 60, 404
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 1 cut(s) 656
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 4 cut(s) 12, 96, 471, 863
BsiHKAI GWGCWC 2 cut(s) 67, 438
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 4 cut(s) 12, 96, 471, 863
Bsp1286I GDGCHC 2 cut(s) 67, 438
Bsp143I GATC 3 cut(s) 87, 309, 500
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 4 cut(s) 9, 568, 665, 833
BspANI GGCC 4 cut(s) 12, 96, 471, 863
BspCNI CTCAG 3 cut(s) 296, 455, 703
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 4 cut(s) 89, 253, 354, 538
BspPI GGATC 3 cut(s) 82, 95, 304
BsrDI GCAATG 3 cut(s) 296, 591, 753
BsrI ACTGG 2 cut(s) 60, 404
BssECI CCNNGG 2 cut(s) 91, 512
BssMI GATC 3 cut(s) 87, 309, 500
Bst2UI CCWGG 2 cut(s) 92, 513
Bst4CI ACNGT 2 cut(s) 76, 210
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 4 cut(s) 434, 469, 642, 813
BstDEI CTNAG 3 cut(s) 283, 442, 690
BstF5I GGATG 2 cut(s) 525, 843
BstFNI CGCG 1 cut(s) 423
BstKTI GATC 3 cut(s) 90, 312, 503
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 87, 309, 500
BstMWI GCNNNNNNNGC 2 cut(s) 429, 800
BstNI CCWGG 2 cut(s) 92, 513
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 2 cut(s) 90, 511
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 656
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 2 cut(s) 87, 309
BstYI RGATCY 2 cut(s) 87, 309
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 4 cut(s) 12, 96, 471, 863
BtsCI GGATG 2 cut(s) 525, 843
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 4 cut(s) 67, 291, 828, 865
Cac8I GCNNGC 4 cut(s) 434, 469, 642, 813
Cfr13I GGNCC 4 cut(s) 11, 94, 353, 862
Csp6I GTAC 2 cut(s) 383, 674
CviAII CATG 2 cut(s) 721, 812
CviJI RGCY 9 cut(s) 12, 47, 96, 109, 471, 478, 689, 739, 863
CviKI_1 RGCY 9 cut(s) 12, 47, 96, 109, 471, 478, 689, 739, 863
CviQI GTAC 2 cut(s) 383, 674
DdeI CTNAG 3 cut(s) 283, 442, 690
DpnI GATC 3 cut(s) 89, 311, 502
DpnII GATC 3 cut(s) 87, 309, 500
DrdI GACNNNNNNGTC 1 cut(s) 360
DseDI GACNNNNNNGTC 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 211, 458
EcoO109I RGGNCCY 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 90, 511
FaeI CATG 2 cut(s) 724, 815
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 720, 811
FauI CCCGC 1 cut(s) 658
FblI GTMKAC 1 cut(s) 728
Fnu4HI GCNGC 3 cut(s) 10, 645, 834
FokI GGATG 2 cut(s) 512, 830
Fsp4HI GCNGC 3 cut(s) 10, 645, 834
FspBI CTAG 3 cut(s) 341, 464, 806
GluI GCNGC 3 cut(s) 10, 645, 834
HaeIII GGCC 4 cut(s) 12, 96, 471, 863
Hin1II CATG 2 cut(s) 724, 815
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 634, 749
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 4 cut(s) 337, 436, 674, 729
Hpy188I TCNGA 2 cut(s) 445, 552
Hpy188III TCNNGA 4 cut(s) 85, 125, 351, 609
Hpy8I GTNNAC 4 cut(s) 337, 436, 674, 729
HpyAV CCTTC 2 cut(s) 58, 482
HpyCH4III ACNGT 2 cut(s) 76, 210
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 4 cut(s) 374, 436, 596, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 429, 800
HpyF3I CTNAG 3 cut(s) 283, 442, 690
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 724, 815
Kzo9I GATC 3 cut(s) 87, 309, 500
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 4 cut(s) 302, 383, 534, 605
MaeI CTAG 3 cut(s) 341, 464, 806
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 4 cut(s) 37, 286, 343, 826
MalI GATC 3 cut(s) 89, 311, 502
MboI GATC 3 cut(s) 87, 309, 500
MboII GAAGA 3 cut(s) 61, 73, 550
MflI RGATCY 2 cut(s) 87, 309
MhlI GDGCHC 2 cut(s) 67, 438
MluCI AATT 1 cut(s) 706
MlyI GAGTC 2 cut(s) 643, 743
MnlI CCTC 2 cut(s) 724, 739
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 2 cut(s) 158, 330
MslI CAYNNNNRTG 1 cut(s) 552
MspR9I CCNGG 2 cut(s) 92, 513
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 92, 513
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 429, 800
NdeII GATC 3 cut(s) 87, 309, 500
NlaIII CATG 2 cut(s) 724, 815
NlaIV GGNNCC 4 cut(s) 89, 253, 354, 538
NmuCI GTSAC 3 cut(s) 286, 343, 826
NspI RCATGY 1 cut(s) 815
PaeI GCATGC 1 cut(s) 815
PceI AGGCCT 1 cut(s) 471
PctI GAATGC 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 557
PkrI GCNGC 3 cut(s) 11, 646, 835
PleI GAGTC 2 cut(s) 642, 743
PpsI GAGTC 2 cut(s) 642, 743
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 90, 511
PspGI CCWGG 2 cut(s) 90, 511
PspN4I GGNNCC 4 cut(s) 89, 253, 354, 538
PspPI GGNCC 4 cut(s) 11, 94, 353, 862
PspPPI RGGWCCY 1 cut(s) 353
PsuI RGATCY 2 cut(s) 87, 309
RsaI GTAC 2 cut(s) 384, 675
RsaNI GTAC 2 cut(s) 383, 674
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 2 cut(s) 158, 330
SatI GCNGC 3 cut(s) 10, 645, 834
Sau3AI GATC 3 cut(s) 87, 309, 500
Sau96I GGNCC 4 cut(s) 11, 94, 353, 862
SchI GAGTC 2 cut(s) 643, 743
ScrFI CCNGG 2 cut(s) 92, 513
SduI GDGCHC 2 cut(s) 67, 438
SetI ASST 7 cut(s) 111, 253, 342, 358, 418, 480, 691
SfaNI GCATC 4 cut(s) 302, 383, 534, 605
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 805
SphI GCATGC 1 cut(s) 815
Sse9I AATT 1 cut(s) 706
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 4 cut(s) 9, 568, 665, 833
SspI AATATT 1 cut(s) 661
SspMI CTAG 3 cut(s) 341, 464, 806
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 90, 511
TaaI ACNGT 2 cut(s) 76, 210
TaiI ACGT 1 cut(s) 418
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 706
TauI GCSGC 2 cut(s) 12, 836
Tru1I TTAA 2 cut(s) 158, 330
Tru9I TTAA 2 cut(s) 158, 330
TscAI CASTG 3 cut(s) 67, 291, 835
TseFI GTSAC 3 cut(s) 286, 343, 826
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 3 cut(s) 286, 343, 826
TspDTI ATGAA 2 cut(s) 17, 171
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 3 cut(s) 67, 291, 835
VneI GTGCAC 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 353
XceI RCATGY 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 3 cut(s) 341, 464, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.