Prupe.7G034400_v2.0.a1

Ubiquitin-associated domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015963
Physical Location & Seq
Forward (+)
6375968 .. 6385028
9061 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G034400.1

Sequence Viewer

Length: 879 bp
ATGAACGGCGGCCCCTCTGGTTTCCACAATGCTCCTGTTACCAGAGCCTTCGTCATTGCTAGCGCTCTCTTCACCGTCTTCTTTGGGTTCCAGGGCCGTTCTAGCAAGCTTGGATTGTCGTATCTGGATATATTTGGGAAGTTTCGCCTTTGGAAGTTAATTGTGTCAATTTTTGCCTTTTCATCTACACCAGAACTGATGTTTGGGCTGTATCTGCTATATTACTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAGTACTCGGTGTTTATTTTGTTCTCTGTGACCGTATCATTACTCTTTGAGATCCTTGCTCTAGCATATCTTAAAGATCCTGCAGTAAACCTGGTGACGTCAGGACCTTATGGTCTTATTTTTGCATCTTTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGCTTTCGTGTATTTGGTGTGCGCTTCTCGGATAAGTCTTTCATATATCTAGCTGGTCTACAGCTTCTTTTATCATCCTGGAAAAGATCAATCTTACCAGGGGTATTTGGCATCCTTTGTGGTTCCTTATATCATCTAAATGTCTTCCATATCCGCAAAGCAAAGTTCCCAGAAGTCATTGCTTCTTTCTTTTCACGGATTTCTTGGCCATCAACGGGGAGTCCGCCAGCAGCGCCAACTAGAAATATTGTGGGAAGTGCAACACCATTCACAGCTCGGCAAGTAGAGAGAAATTATCCCTCTGCCTTGGCTTCTGCCACAGAGCCAACGGAGGCCTCCATTGCGACTCTGGTTTCTATGGGCTTTGATAGGAATTCTGCCAGACAGGCACTGGTGCAGGCTAGAAATGATGTCAACGTAGCTACAAACATCCTTCTTGAAGCGCAGGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DER1 Rhomboid UBA

Protein Analysis

293

Amino Acids

32.34

Weight (kDa)

10.04

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56740
fragaria_vesca FvH4_6g25340
malus_domestica MD12G1096200.v1.1 MD14G1089500.v1.1
prunus_persica Prupe.7G034400_v2.0.a1
pyrus_communis pycom12g08520 pycom14g07930
rosa_chinensis RchiOBHm_Chr2g0125741
rosa_laevigata RLG00000018878
rosa_multiflora Rmu_ssc0000055.1_g000017
rosa_roxburghii Rroxscaffold_2G00117780
rosa_rugosa Rorug02G0258800
rosa_samantha Rh2BG325000 Rh2CG306900
rosa_wichuraiana Rw2G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
AatII GACGTC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 481
AciI CCGC 3 cut(s) 9, 577, 647
AclWI GGATC 2 cut(s) 304, 329
AcoI YGGCCR 1 cut(s) 629
AcsI RAATTY 1 cut(s) 796
AcuI CTGAAG 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 2 cut(s) 263, 393
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 2 cut(s) 420, 863
AjnI CCWGG 4 cut(s) 90, 348, 500, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 5 cut(s) 109, 476, 487, 698, 845
AluI AGCT 5 cut(s) 109, 476, 487, 698, 845
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 304, 329
AlwNI CAGNNNCTG 1 cut(s) 814
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 4 cut(s) 10, 94, 629, 756
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 1 cut(s) 796
AspLEI GCGC 4 cut(s) 65, 447, 658, 868
AspS9I GGNCC 3 cut(s) 11, 94, 362
AsuHPI GGTGA 2 cut(s) 64, 364
AsuNHI GCTAGC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 70, 559
BbvI GCAGC 1 cut(s) 665
BccI CCATC 1 cut(s) 640
BceAI ACGGC 2 cut(s) 22, 81
BciT130I CCWGG 4 cut(s) 92, 350, 502, 522
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 6 cut(s) 60, 102, 320, 473, 663, 825
BfmI CTRYAG 2 cut(s) 339, 482
BfoI RGCGCY 2 cut(s) 66, 659
BglI GCCNNNNNGGC 1 cut(s) 809
BisI GCNGC 2 cut(s) 10, 654
BlsI GCNGC 2 cut(s) 11, 655
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 4 cut(s) 92, 350, 502, 522
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 3 cut(s) 11, 94, 362
BmiI GGNNCC 4 cut(s) 13, 89, 253, 547
BmrFI CCNGG 4 cut(s) 92, 350, 502, 522
BmsI GCATC 2 cut(s) 392, 543
BmtI GCTAGC 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 70, 559
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 91, 521, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 413, 819
Bse3DI GCAATG 3 cut(s) 54, 600, 762
BseBI CCWGG 4 cut(s) 92, 350, 502, 522
BseDI CCNNGG 3 cut(s) 91, 521, 729
BseGI GGATG 3 cut(s) 497, 534, 852
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMI GCAATG 3 cut(s) 54, 600, 762
BseNI ACTGG 2 cut(s) 413, 819
BseXI GCAGC 1 cut(s) 665
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 4 cut(s) 12, 96, 631, 758
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 4 cut(s) 12, 96, 631, 758
Bsp143I GATC 3 cut(s) 309, 334, 509
BspACI CCGC 3 cut(s) 9, 577, 647
BspANI GGCC 4 cut(s) 12, 96, 631, 758
BspLI GGNNCC 4 cut(s) 13, 89, 253, 547
BspMAI CTGCAG 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 304, 329
BsrDI GCAATG 3 cut(s) 54, 600, 762
BsrI ACTGG 2 cut(s) 413, 819
BssECI CCNNGG 3 cut(s) 91, 521, 729
BssMI GATC 3 cut(s) 309, 334, 509
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 4 cut(s) 92, 350, 502, 522
Bst4CI ACNGT 2 cut(s) 76, 292
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 5 cut(s) 61, 107, 651, 822, 870
BstF5I GGATG 3 cut(s) 497, 534, 852
BstH2I RGCGCY 2 cut(s) 66, 659
BstHHI GCGC 4 cut(s) 65, 447, 658, 868
BstKTI GATC 3 cut(s) 312, 337, 512
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 309, 334, 509
BstMWI GCNNNNNNNGC 5 cut(s) 102, 214, 655, 764, 809
BstNI CCWGG 4 cut(s) 92, 350, 502, 522
BstSCI CCNGG 4 cut(s) 90, 348, 500, 520
BstSFI CTRYAG 2 cut(s) 339, 482
BstV1I GCAGC 1 cut(s) 665
BstV2I GAAGAC 2 cut(s) 70, 559
BstX2I RGATCY 2 cut(s) 309, 334
BstYI RGATCY 2 cut(s) 309, 334
BsuRI GGCC 4 cut(s) 12, 96, 631, 758
BtsCI GGATG 3 cut(s) 497, 534, 852
BtsIMutI CAGTG 2 cut(s) 812, 874
Cac8I GCNNGC 5 cut(s) 61, 107, 651, 822, 870
CaiI CAGNNNCTG 1 cut(s) 814
CfoI GCGC 4 cut(s) 65, 447, 658, 868
Cfr13I GGNCC 3 cut(s) 11, 94, 362
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 2 cut(s) 262, 392
CviQI GTAC 2 cut(s) 262, 392
DpnI GATC 3 cut(s) 311, 336, 511
DpnII GATC 3 cut(s) 309, 334, 509
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 629
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 4 cut(s) 90, 348, 500, 520
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaiI YATR 9 cut(s) 131, 220, 325, 369, 467, 469, 553, 573, 782
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 10, 654
FokI GGATG 3 cut(s) 484, 521, 839
Fsp4HI GCNGC 2 cut(s) 10, 654
FspBI CTAG 6 cut(s) 60, 102, 320, 473, 663, 825
GlaI GCGC 4 cut(s) 64, 446, 657, 867
GluI GCNGC 2 cut(s) 10, 654
HaeII RGCGCY 2 cut(s) 66, 659
HaeIII GGCC 4 cut(s) 12, 96, 631, 758
HhaI GCGC 4 cut(s) 65, 447, 658, 868
Hin1I GRCGYC 1 cut(s) 356
Hin6I GCGC 4 cut(s) 63, 445, 656, 866
HinP1I GCGC 4 cut(s) 63, 445, 656, 866
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 643, 769
HphI GGTGA 2 cut(s) 64, 364
Hpy166II GTNNAC 3 cut(s) 346, 482, 838
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 3 cut(s) 125, 360, 860
Hpy8I GTNNAC 3 cut(s) 346, 482, 838
HpyAV CCTTC 2 cut(s) 58, 866
HpyCH4III ACNGT 2 cut(s) 76, 292
HpyCH4IV ACGT 2 cut(s) 356, 840
HpyCH4V TGCA 4 cut(s) 341, 383, 683, 820
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 214, 655, 764, 809
HpySE526I ACGT 2 cut(s) 356, 840
Hsp92I GRCGYC 1 cut(s) 356
HspAI GCGC 4 cut(s) 63, 445, 656, 866
Kzo9I GATC 3 cut(s) 309, 334, 509
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 2 cut(s) 392, 543
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 6 cut(s) 60, 102, 320, 473, 663, 825
MaeII ACGT 2 cut(s) 356, 840
MaeIII GTNAC 3 cut(s) 37, 286, 352
MalI GATC 3 cut(s) 311, 336, 511
MboI GATC 3 cut(s) 309, 334, 509
MboII GAAGA 3 cut(s) 61, 70, 559
MflI RGATCY 2 cut(s) 309, 334
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 4 cut(s) 159, 168, 715, 796
MluNI TGGCCA 1 cut(s) 631
MlyI GAGTC 2 cut(s) 652, 763
MnlI CCTC 4 cut(s) 25, 733, 748, 769
Mox20I TGGCCA 1 cut(s) 631
MscI TGGCCA 1 cut(s) 631
MseI TTAA 2 cut(s) 158, 330
MslI CAYNNNNRTG 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 631
MspR9I CCNGG 4 cut(s) 92, 350, 502, 522
MvaI CCWGG 4 cut(s) 92, 350, 502, 522
MwoI GCNNNNNNNGC 5 cut(s) 102, 214, 655, 764, 809
NdeII GATC 3 cut(s) 309, 334, 509
NheI GCTAGC 1 cut(s) 59
NlaIV GGNNCC 4 cut(s) 13, 89, 253, 547
NmeAIII GCCGAG 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 286, 352
PceI AGGCCT 1 cut(s) 758
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 2 cut(s) 11, 655
PleI GAGTC 2 cut(s) 651, 763
PpsI GAGTC 2 cut(s) 651, 763
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 4 cut(s) 90, 348, 500, 520
PspGI CCWGG 4 cut(s) 90, 348, 500, 520
PspN4I GGNNCC 4 cut(s) 13, 89, 253, 547
PspPI GGNCC 3 cut(s) 11, 94, 362
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 814
PsuI RGATCY 2 cut(s) 309, 334
RsaI GTAC 2 cut(s) 263, 393
RsaNI GTAC 2 cut(s) 262, 392
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 2 cut(s) 158, 330
SatI GCNGC 2 cut(s) 10, 654
Sau3AI GATC 3 cut(s) 309, 334, 509
Sau96I GGNCC 3 cut(s) 11, 94, 362
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 2 cut(s) 652, 763
ScrFI CCNGG 4 cut(s) 92, 350, 502, 522
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 2 cut(s) 392, 543
SfcI CTRYAG 2 cut(s) 339, 482
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 561
Sse9I AATT 4 cut(s) 159, 168, 715, 796
SseBI AGGCCT 1 cut(s) 758
SsiI CCGC 3 cut(s) 9, 577, 647
SspI AATATT 1 cut(s) 670
SspMI CTAG 6 cut(s) 60, 102, 320, 473, 663, 825
StuI AGGCCT 1 cut(s) 758
StyD4I CCNGG 4 cut(s) 90, 348, 500, 520
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 76, 292
TaiI ACGT 2 cut(s) 359, 843
TasI AATT 4 cut(s) 159, 168, 715, 796
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 158, 330
Tru9I TTAA 2 cut(s) 158, 330
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 2 cut(s) 286, 352
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 2 cut(s) 286, 352
TspDTI ATGAA 3 cut(s) 17, 171, 454
TspGWI ACGGA 2 cut(s) 634, 767
TspRI CASTG 1 cut(s) 819
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 2 cut(s) 769, 811
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 6 cut(s) 60, 102, 320, 473, 663, 825
ZraI GACGTC 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.