FvH4_6g25340

Ubiquitin-associated domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015963
Physical Location & Seq
Reverse (-)
19181011 .. 19186393
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25340.t3

Sequence Viewer

Length: 879 bp
ATGAACGGCGGCCCATCCGGTTTCCACAATGCTCCTGTCACCAGAGCCTTGGTTACCTCCAGCGCTCTCTTCACCGTCTTCTTCGGGATCCAGAGCCGTTCTTCCAAGCTCGGATTATCCTATCTCGATATTTTTGGCAAGTTTCGCCTCTGGAAGTTAATTGTGTCAGTTTTTGCCTTTTCTTCTACCCCAGAGCTCATGTTCGGACTCTATCTCCTTTACTACTTCAGGGTCTTTGAGAGACAGATTGGTCCCAATAAGTATTCGGTCTTTATCTTGTACTCTGTGATGGCATCGTTGCTGCTCGAGATTCTTGCTATAGCATGCCTTAAAGATCCTGCAGTAAACCTAGTGACATCGGGACCCTATGGTCTTATATTTGCATCTTTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGTTTTCGCATGTTTGGTGTGCACTTCTCAGACAAGTCATTTATATATCTAGCTGGTCTTCAGCTTCTTTTATCATCTTGGAAAAGATCGGTCTTACCAGGAATATGTGGCATCCTATGTGGTTCCTTATATCATCTGAATGTCTTCTGTATCCGCAAAGCAAAGTTCCCAGAACTCATTGCATCTTTCTTTTCACGACTTAACTTGCCAACTATGGGAAGTCTGCCAGCAGCACCAACTAGAATTGTTGCAGGAAGTGTACCATCATTCACAGCTCGGCAAGTGGAGAGAAATTATCCGTCTCCGATGTTGTCTACCACAGAGCCAACAGAGGACTCCATTGCTACCCTTGTGTCTATGGGTTTTGATAGGAACTCTGCCAGACAAGCACTAGTGCAAGCCAGAAATGATGTCATTGCGGCCACAGATATCCTTTTAGAAGCACAGGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DER1 Rhomboid UBA

Protein Analysis

293

Amino Acids

32.3

Weight (kDa)

9.54

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA PF00627 155 - 190 1.4e-11 UBA/TS-N domain
UBA_7 PF22562 156 - 194 3e-07 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56740
fragaria_vesca FvH4_6g25340
malus_domestica MD12G1096200.v1.1 MD14G1089500.v1.1
prunus_persica Prupe.7G034400_v2.0.a1
pyrus_communis pycom12g08520 pycom14g07930
rosa_chinensis RchiOBHm_Chr2g0125741
rosa_laevigata RLG00000018878
rosa_multiflora Rmu_ssc0000055.1_g000017
rosa_roxburghii Rroxscaffold_2G00117780
rosa_rugosa Rorug02G0258800
rosa_samantha Rh2BG325000 Rh2CG306900
rosa_wichuraiana Rw2G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 249, 369
AccI GTMKAC 1 cut(s) 737
AciI CCGC 3 cut(s) 9, 577, 842
AclWI GGATC 3 cut(s) 82, 95, 329
AcoI YGGCCR 1 cut(s) 843
AcuI CTGAAG 2 cut(s) 211, 467
AfaI GTAC 3 cut(s) 281, 393, 684
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 420
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 5 cut(s) 109, 196, 476, 487, 698
AluI AGCT 5 cut(s) 109, 196, 476, 487, 698
Alw21I GWGCWC 2 cut(s) 198, 447
Alw26I GTCTC 2 cut(s) 235, 729
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 3 cut(s) 82, 95, 329
Ama87I CYCGRG 1 cut(s) 305
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 2 cut(s) 10, 843
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 301, 653
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 11, 251, 362
AsuHPI GGTGA 2 cut(s) 31, 64
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 251, 362
BaeGI GKGCMC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 3 cut(s) 70, 473, 559
Bbv12I GWGCWC 2 cut(s) 198, 447
BbvI GCAGC 2 cut(s) 288, 665
BccI CCATC 3 cut(s) 22, 283, 694
BceAI ACGGC 2 cut(s) 22, 81
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 522
BciVI GTATCC 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 235, 729
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 4 cut(s) 350, 473, 663, 815
BfmI CTRYAG 2 cut(s) 318, 339
BfoI RGCGCY 1 cut(s) 66
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 4 cut(s) 10, 302, 654, 843
BlsI GCNGC 4 cut(s) 11, 303, 655, 844
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 2 cut(s) 251, 362
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 11, 251, 362
BmiI GGNNCC 5 cut(s) 89, 253, 363, 364, 547
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 4 cut(s) 302, 392, 543, 614
BpiI GAAGAC 3 cut(s) 70, 473, 559
BpmI CTGGAG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 3 cut(s) 600, 762, 837
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 14, 534
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMI GCAATG 3 cut(s) 600, 762, 837
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 2 cut(s) 288, 665
BshFI GGCC 2 cut(s) 12, 845
BsiHKAI GWGCWC 2 cut(s) 198, 447
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 237, 375
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 2 cut(s) 235, 729
BsmBI CGTCTC 1 cut(s) 729
BsmFI GGGAC 2 cut(s) 237, 375
BsnI GGCC 2 cut(s) 12, 845
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 198, 447
Bsp143I GATC 3 cut(s) 87, 334, 509
BspACI CCGC 3 cut(s) 9, 577, 842
BspANI GGCC 2 cut(s) 12, 845
BspCNI CTCAG 1 cut(s) 464
BspLI GGNNCC 5 cut(s) 89, 253, 363, 364, 547
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 3 cut(s) 82, 95, 329
BsrDI GCAATG 3 cut(s) 600, 762, 837
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 87, 334, 509
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 325, 651, 822
BstDEI CTNAG 1 cut(s) 451
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 2 cut(s) 14, 534
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 90, 337, 512
BstMAI GTCTC 2 cut(s) 235, 729
BstMBI GATC 3 cut(s) 87, 334, 509
BstMWI GCNNNNNNNGC 2 cut(s) 144, 809
BstNI CCWGG 1 cut(s) 522
BstNSI RCATGY 2 cut(s) 327, 436
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 2 cut(s) 318, 339
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 288, 665
BstV2I GAAGAC 3 cut(s) 70, 473, 559
BstX2I RGATCY 2 cut(s) 87, 334
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 2 cut(s) 87, 334
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 2 cut(s) 12, 845
BtsCI GGATG 2 cut(s) 14, 534
BtsIMutI CAGTG 1 cut(s) 874
Cac8I GCNNGC 3 cut(s) 325, 651, 822
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 11, 251, 362
Csp6I GTAC 3 cut(s) 280, 392, 683
CviAII CATG 3 cut(s) 199, 324, 433
CviQI GTAC 3 cut(s) 280, 392, 683
DdeI CTNAG 1 cut(s) 451
DpnI GATC 3 cut(s) 89, 336, 511
DpnII GATC 3 cut(s) 87, 334, 509
DrdI GACNNNNNNGTC 2 cut(s) 249, 369
DseDI GACNNNNNNGTC 2 cut(s) 249, 369
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 251, 362
Eco47III AGCGCT 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 211, 467
Eco88I CYCGRG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 362
EcoO65I GGTNACC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 520
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 729
FaeI CATG 3 cut(s) 202, 327, 436
FaqI GGGAC 2 cut(s) 237, 375
FatI CATG 3 cut(s) 198, 323, 432
FblI GTMKAC 1 cut(s) 737
Fnu4HI GCNGC 4 cut(s) 10, 302, 654, 843
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 10, 302, 654, 843
FspBI CTAG 4 cut(s) 350, 473, 663, 815
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 10, 302, 654, 843
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 12, 845
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 202, 327, 436
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 207, 310, 758
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 31, 64
Hpy166II GTNNAC 4 cut(s) 346, 445, 683, 738
Hpy188I TCNGA 5 cut(s) 113, 206, 454, 561, 729
Hpy188III TCNNGA 7 cut(s) 85, 91, 125, 151, 307, 360, 618
Hpy8I GTNNAC 4 cut(s) 346, 445, 683, 738
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 6 cut(s) 341, 383, 445, 605, 674, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 809
HpyF3I CTNAG 1 cut(s) 451
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 202, 327, 436
HspAI GCGC 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 362
Kzo9I GATC 3 cut(s) 87, 334, 509
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 2 cut(s) 288, 665
LweI GCATC 4 cut(s) 302, 392, 543, 614
MaeI CTAG 4 cut(s) 350, 473, 663, 815
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 37, 52, 352
MalI GATC 3 cut(s) 89, 336, 511
MboI GATC 3 cut(s) 87, 334, 509
MboII GAAGA 7 cut(s) 61, 70, 73, 93, 174, 473, 559
MflI RGATCY 2 cut(s) 87, 334
MhlI GDGCHC 2 cut(s) 198, 447
MluCI AATT 3 cut(s) 159, 666, 715
MlyI GAGTC 2 cut(s) 201, 752
MnlI CCTC 3 cut(s) 67, 158, 748
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 3 cut(s) 158, 330, 624
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 144, 809
NdeII GATC 3 cut(s) 87, 334, 509
NlaIII CATG 3 cut(s) 202, 327, 436
NlaIV GGNNCC 5 cut(s) 89, 253, 363, 364, 547
NmeAIII GCCGAG 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 37, 352
NspI RCATGY 2 cut(s) 327, 436
PaeI GCATGC 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 4 cut(s) 11, 303, 655, 844
PleI GAGTC 2 cut(s) 201, 752
PpsI GAGTC 2 cut(s) 201, 752
PpuMI RGGWCCY 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 520
PspEI GGTNACC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 5 cut(s) 89, 253, 363, 364, 547
PspPI GGNCC 3 cut(s) 11, 251, 362
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 2 cut(s) 87, 334
RsaI GTAC 3 cut(s) 281, 393, 684
RsaNI GTAC 3 cut(s) 280, 392, 683
RseI CAYNNNNRTG 1 cut(s) 561
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 158, 330, 624
SatI GCNGC 4 cut(s) 10, 302, 654, 843
Sau3AI GATC 3 cut(s) 87, 334, 509
Sau96I GGNCC 3 cut(s) 11, 251, 362
SchI GAGTC 2 cut(s) 201, 752
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 198, 447
SetI ASST 8 cut(s) 59, 111, 198, 351, 427, 478, 489, 700
SfaNI GCATC 4 cut(s) 302, 392, 543, 614
SfcI CTRYAG 2 cut(s) 318, 339
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 2 cut(s) 251, 362
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SpeI ACTAGT 1 cut(s) 814
SphI GCATGC 1 cut(s) 327
Sse9I AATT 3 cut(s) 159, 666, 715
SsiI CCGC 3 cut(s) 9, 577, 842
SspMI CTAG 4 cut(s) 350, 473, 663, 815
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 126, 306
TaqII GACCGA 2 cut(s) 256, 502
TasI AATT 3 cut(s) 159, 666, 715
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 12, 845
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 3 cut(s) 158, 330, 624
Tru9I TTAA 3 cut(s) 158, 330, 624
TseFI GTSAC 2 cut(s) 37, 352
TseI GCWGC 2 cut(s) 301, 653
Tsp45I GTSAC 2 cut(s) 37, 352
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 711
VneI GTGCAC 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 251, 362
XceI RCATGY 2 cut(s) 327, 436
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 4 cut(s) 350, 473, 663, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.