Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Reverse (-)

21069411 .. 21070356

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTCTTCTCTGCTTCAATTCTCTCCCTTCTCTCTCTTCTCTTTCTTCTTCTTCTTCCTCGCGCCTTCTTCAATCTCCGTCTTTCGCTTCTCCAGTTTTGAGCCTTAAACCCAACGCTGTCGAGTCCAAGAACAGAGTCTCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGGAAGAATTGTGGTGAAGGCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCTGAGAGCAAGGAGGAACCAAAGACTGTTGTTGCTGCTGTTCCAGTGGATAAACTACCGTTGGAATCGAAAGAAGCTAAAGAGAAACTGCTCTTGGAATTGAGGCTGAAGATGAAGCTGGCCAAAAAGATTAGGCTACGCAGGAAACGTCTGGTTCGTAAGCGTAAGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAAAACAAGAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

10.86

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	2 cut(s)	342, 410
AcuI	CTGAAG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	19, 74, 163
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	3 cut(s)	159, 299, 340
AluI	AGCT	3 cut(s)	159, 299, 340
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	2 cut(s)	342, 410
ApeKI	GCWGC	2 cut(s)	197, 257
AspLEI	GCGC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	199
BalI	TGGCCA	2 cut(s)	344, 412
BbvI	GCAGC	2 cut(s)	184, 244
BccI	CCATC	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	3 cut(s)	195, 198, 258
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	3 cut(s)	196, 199, 259
BmiI	GGNNCC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpmI	CTGGAG	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	95, 266
BseDI	CCNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	160, 210, 216
BseNI	ACTGG	2 cut(s)	95, 266
BseXI	GCAGC	2 cut(s)	184, 244
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	344, 412
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	344, 412
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	344, 412
BspCNI	CTCAG	3 cut(s)	159, 211, 217
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	95, 266
BssECI	CCNNGG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	250, 282
Bst6I	CTCTTC	2 cut(s)	12, 43
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	146, 219, 225
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	184, 244
BsuRI	GGCC	2 cut(s)	344, 412
BtgI	CCRYGG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	154, 273
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	66
CviAII	CATG	1 cut(s)	173
DdeI	CTNAG	3 cut(s)	146, 219, 225
EaeI	YGGCCR	2 cut(s)	342, 410
Eam1104I	CTCTTC	2 cut(s)	12, 43
EarI	CTCTTC	2 cut(s)	12, 43
Eco130I	CCWWGG	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	176
FaiI	YATR	1 cut(s)	174
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	195, 198, 258
Fsp4HI	GCNGC	3 cut(s)	195, 198, 258
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	195, 198, 258
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	344, 412
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	125, 138, 287
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	39, 77, 184, 394, 426
HpyCH4III	ACNGT	2 cut(s)	250, 282
HpyCH4IV	ACGT	1 cut(s)	370
HpyF3I	CTNAG	3 cut(s)	146, 219, 225
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	7 cut(s)	108, 189, 237, 279, 326, 349, 359
Lsp1109I	GCAGC	2 cut(s)	184, 244
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	370
MlsI	TGGCCA	2 cut(s)	344, 412
MluCI	AATT	3 cut(s)	19, 180, 320
MluNI	TGGCCA	2 cut(s)	344, 412
MlyI	GAGTC	2 cut(s)	134, 147
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	4 cut(s)	70, 229, 318, 387
Mox20I	TGGCCA	2 cut(s)	344, 412
MscI	TGGCCA	2 cut(s)	344, 412
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	2 cut(s)	344, 412
MvnI	CGCG	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	172
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	367, 376
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	196, 199, 259
PleI	GAGTC	2 cut(s)	133, 146
PpsI	GAGTC	2 cut(s)	133, 146
PspN4I	GGNNCC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	195, 198, 258
SchI	GAGTC	2 cut(s)	134, 147
SetI	ASST	5 cut(s)	161, 301, 342, 373, 418
Sse9I	AATT	3 cut(s)	19, 180, 320
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	250, 282
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	3 cut(s)	123, 290, 406
TasI	AATT	3 cut(s)	19, 180, 320
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	154, 273
TseI	GCWGC	2 cut(s)	197, 257
TspDTI	ATGAA	2 cut(s)	350, 440
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	154, 273
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.