Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Forward (+)

5684919 .. 5691670

Gene Structure 6752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1060800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGTCTTCTTCTCTACTCCAATCCTCTCCCTCTCACCACCGTTTCTTCCCGTTCTTCTTCTTCTTCTTCGCCGTCTCCAACTTCATCACCTACACCTTTCTCTGCAACTATTTCATGGATGCACATGAAACCAAATGGTCTGCGTCCGAAATTTTTCAGCGGAGTTCGACTTCGTATGCCCGTTGTGAAAAGGTCAGGTTCAGTAGTTGTTAAGGCCTCCTCTGACATTGATGGAACTGCTGCTGCAAATGACGGTAGTGAGCCCCTTCCAGATAGCAAGGAAGAGGTGGCGGTACCTGTCGACAAGCTTCCCTTGGAGTCAAAGCTGCAAGAGCGCCTAGAGCAGAAGGCGAAGATGCAACTGGCGAAGAAGATAAGGCTCCGTAGGAACCGACTTGTTCGCAAGCGAAAACTGAGAAAGAAAGGCAGATGGCCTCCATCAAAGATGAAGAAGCTAAAGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

11.24

Isoelectric Point (pI)

80.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	162, 293
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	297
AluBI	AGCT	3 cut(s)	310, 328, 457
AluI	AGCT	3 cut(s)	310, 328, 457
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	216, 434
ApeKI	GCWGC	3 cut(s)	242, 245, 328
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	28, 81
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	229, 232, 315
BccI	CCATC	3 cut(s)	227, 426, 448
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	340
BisI	GCNGC	3 cut(s)	243, 246, 329
BlsI	GCNGC	3 cut(s)	244, 247, 330
BmiI	GGNNCC	3 cut(s)	297, 383, 392
BmsI	GCATC	2 cut(s)	111, 348
BsaJI	CCNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	229, 232, 315
BshFI	GGCC	2 cut(s)	218, 436
BshNI	GGYRCC	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	218, 436
Bsp1286I	GDGCHC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	162, 293
BspANI	GGCC	2 cut(s)	218, 436
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	297, 383, 392
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	43, 257
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 343
BstV1I	GCAGC	3 cut(s)	229, 232, 315
BsuRI	GGCC	2 cut(s)	218, 436
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	339
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	2 cut(s)	117, 127
CviJI	RGCY	7 cut(s)	218, 265, 310, 328, 382, 436, 457
CviKI_1	RGCY	7 cut(s)	218, 265, 310, 328, 382, 436, 457
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	120, 130
FaiI	YATR	3 cut(s)	118, 128, 179
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	116, 126
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	243, 246, 329
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	243, 246, 329
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	3 cut(s)	243, 246, 329
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	218, 436
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	120, 130
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	28, 81
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	150, 226, 470
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	278, 343
HpyCH4III	ACNGT	2 cut(s)	43, 257
HpyCH4V	TGCA	5 cut(s)	107, 124, 248, 331, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 343
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	120, 130
HspAI	GCGC	1 cut(s)	337
KpnI	GGTACC	1 cut(s)	299
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	4 cut(s)	183, 285, 312, 350
Lsp1109I	GCAGC	3 cut(s)	229, 232, 315
LweI	GCATC	2 cut(s)	111, 348
MaeI	CTAG	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	36, 42, 229, 232, 280, 447
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	334, 343
NlaIII	CATG	2 cut(s)	120, 130
NlaIV	GGNNCC	3 cut(s)	297, 383, 392
PceI	AGGCCT	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	244, 247, 330
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	297, 383, 392
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	243, 246, 329
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	94, 100, 197, 202, 291, 301, 312, 330, 459
SfaNI	GCATC	2 cut(s)	111, 348
Sse9I	AATT	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	162, 293
SspMI	CTAG	1 cut(s)	341
StuI	AGGCCT	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	43, 257
TaqI	TCGA	2 cut(s)	169, 303
TasI	AATT	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	3 cut(s)	242, 245, 328
TspDTI	ATGAA	4 cut(s)	75, 105, 143, 464
TspGWI	ACGGA	1 cut(s)	374
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.