Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Forward (+)

3997846 .. 3998726

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAATGGGTCTTCTTCTCTACTCCAATCCTCTCCCTCTCACCACCGCTTCGTCCCGTTCTTCTTCTTTTTCTTCGCCGTCTCCAACTTCATCACCTTCACCTTTCTCTGCAACTATTTCATGGATGCACATGAAACCAAATGGTCTGCGTCCGAAATTTTTCAGCGGAGTTCGACTTCGTATGCCCGTTGTGAAAAGGTCAGGTTCAGTAGTTGTTAAGGCCTCCTCTGACATTGATGGAACTGCTGCTGCAAATGAGGGTAGTGAGCCCCTTCCGGATAGCAAGGAAGGTGTGGCGGTACCCGTCGACAAGCTTCCCTTGGAGTCAAAGCTGCAAGAGCGGCTAGAGCAGAAGGCGAAGATGCAACTGGCGAAGAAGATAAGGCTTCGTAGGAACCGACTTGTTCGCAAGCGAAAACTGAGAAAGAAAGGCAGATGGCCTCCATCAAAGATGAAGAAGCTAAAGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

11.4

Isoelectric Point (pI)

81.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	4 cut(s)	48, 168, 299, 343
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	1 cut(s)	303
AluBI	AGCT	3 cut(s)	316, 334, 463
AluI	AGCT	3 cut(s)	316, 334, 463
Alw26I	GTCTC	1 cut(s)	87
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	222, 440
ApeKI	GCWGC	3 cut(s)	248, 251, 334
ApoI	RAATTY	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	34, 87, 93
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	235, 238, 321
BccI	CCATC	3 cut(s)	233, 432, 454
BceAI	ACGGC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	4 cut(s)	249, 252, 335, 344
BlsI	GCNGC	4 cut(s)	250, 253, 336, 345
BmiI	GGNNCC	2 cut(s)	303, 398
BmsI	GCATC	2 cut(s)	117, 354
BpiI	GAAGAC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	235, 238, 321
BshFI	GGCC	2 cut(s)	224, 442
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	87
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	224, 442
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	277
BspACI	CCGC	4 cut(s)	48, 168, 299, 343
BspANI	GGCC	2 cut(s)	224, 442
BspCNI	CTCAG	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	303, 398
BspT107I	GGYRCC	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 343, 349
BstV1I	GCAGC	3 cut(s)	235, 238, 321
BstV2I	GAAGAC	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	224, 442
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	413
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	2 cut(s)	123, 133
CviJI	RGCY	8 cut(s)	224, 271, 316, 334, 346, 388, 442, 463
CviKI_1	RGCY	8 cut(s)	224, 271, 316, 334, 346, 388, 442, 463
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	2 cut(s)	126, 136
FaiI	YATR	3 cut(s)	124, 134, 185
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	122, 132
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	249, 252, 335, 344
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	4 cut(s)	249, 252, 335, 344
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	4 cut(s)	249, 252, 335, 344
HaeIII	GGCC	2 cut(s)	224, 442
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	126, 136
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	3 cut(s)	34, 87, 93
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	156, 232
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	4 cut(s)	108, 284, 284, 349
HpyCH4V	TGCA	5 cut(s)	113, 130, 254, 337, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 343, 349
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	2 cut(s)	126, 136
Kpn2I	TCCGGA	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	305
LpnPI	CCDG	3 cut(s)	189, 291, 356
Lsp1109I	GCAGC	3 cut(s)	235, 238, 321
LweI	GCATC	2 cut(s)	117, 354
MaeI	CTAG	1 cut(s)	347
MbiI	CCGCTC	1 cut(s)	343
MboII	GAAGA	9 cut(s)	5, 8, 54, 57, 66, 373, 388, 391, 469
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	42, 48, 235, 238, 253, 453
MroI	TCCGGA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	340, 343, 349
NlaIII	CATG	2 cut(s)	126, 136
NlaIV	GGNNCC	2 cut(s)	303, 398
PceI	AGGCCT	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	250, 253, 336, 345
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	303, 398
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	249, 252, 335, 344
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	8 cut(s)	100, 106, 203, 208, 295, 318, 336, 465
SfaNI	GCATC	2 cut(s)	117, 354
Sse9I	AATT	1 cut(s)	158
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	4 cut(s)	48, 168, 299, 343
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	2 cut(s)	175, 309
TasI	AATT	1 cut(s)	158
TauI	GCSGC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	3 cut(s)	248, 251, 334
TspDTI	ATGAA	5 cut(s)	17, 81, 111, 149, 470
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.