Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Reverse (-)

31409210 .. 31410293

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1260500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCTTCTTCTCTACTCCAATCCTCTGCCTCTCACCACCGCTTCTTCCCCTTCTTCTTCTTCTTCGCCGTCTCCAACTTCATCACCTTCATCTTTCTCTGCAACTATTTCATGGATGCACATGAAACCCAATAATCTGCATCCGAAATCTTTTAGCGGAGTTCGACTTCATATGCCTGTTGTGAAAAGGTCTGCTTCAGTGGTTGTTAAGGCCTCCTCTGACATTGATGGAACTACTGCTGCAAATGAGGGCAGTGAGCCCCTTCCAGATAGCAAGGGAGAGGCGGTGGTACCTGTCGACAAGCTTCCTTTGGAGTCAAAGCTGCAAGAGCGGCTAGAGCAGAAGAAGAAGATGCAACTGGCGAAGAAAATAAGGCTTCGTAGGAACCGACTTGTTCGCAAACGAAAACTGAGAAAGAAAGGCAGATGGCCTCCATCAAAGATGAAGAAGTTAAAGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.14

Weight (kDa)

10.99

Isoelectric Point (pI)

75.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	4 cut(s)	42, 159, 287, 334
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	294
AluBI	AGCT	2 cut(s)	307, 325
AluI	AGCT	2 cut(s)	307, 325
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	213, 431
ApeKI	GCWGC	2 cut(s)	242, 325
Asp718I	GGTACC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	28, 78
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	229, 312
BccI	CCATC	3 cut(s)	224, 423, 445
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	3 cut(s)	243, 326, 335
BlsI	GCNGC	3 cut(s)	244, 327, 336
BmiI	GGNNCC	2 cut(s)	294, 389
BmsI	GCATC	3 cut(s)	108, 151, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse1I	ACTGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	123, 142
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	229, 312
BshFI	GGCC	2 cut(s)	215, 433
BshNI	GGYRCC	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	215, 433
Bsp1286I	GDGCHC	1 cut(s)	264
BspACI	CCGC	4 cut(s)	42, 159, 287, 334
BspANI	GGCC	2 cut(s)	215, 433
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	294, 389
BspT107I	GGYRCC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	123, 142
BstMAI	GTCTC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 334, 340
BstV1I	GCAGC	2 cut(s)	229, 312
BsuRI	GGCC	2 cut(s)	215, 433
BtsCI	GGATG	2 cut(s)	123, 142
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	207, 262
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	114, 124
CviJI	RGCY	7 cut(s)	215, 262, 307, 325, 337, 379, 433
CviKI_1	RGCY	7 cut(s)	215, 262, 307, 325, 337, 379, 433
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	117, 127
FaiI	YATR	4 cut(s)	115, 125, 174, 176
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	2 cut(s)	113, 123
FauNDI	CATATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	243, 326, 335
FokI	GGATG	2 cut(s)	129, 130
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	243, 326, 335
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	3 cut(s)	243, 326, 335
HaeIII	GGCC	2 cut(s)	215, 433
Hin1II	CATG	2 cut(s)	117, 127
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	317
HphI	GGTGA	2 cut(s)	28, 78
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	147, 223, 467
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	63, 99, 275
HpyCH4V	TGCA	6 cut(s)	104, 121, 142, 245, 328, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 334, 340
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	117, 127
KpnI	GGTACC	1 cut(s)	296
LpnPI	CCDG	4 cut(s)	192, 282, 309, 347
Lsp1109I	GCAGC	2 cut(s)	229, 312
LweI	GCATC	3 cut(s)	108, 151, 345
MaeI	CTAG	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	36, 42, 226, 229, 244, 277, 444
MseI	TTAA	2 cut(s)	210, 455
MwoI	GCNNNNNNNGC	3 cut(s)	331, 334, 340
NdeI	CATATG	1 cut(s)	174
NlaIII	CATG	2 cut(s)	117, 127
NlaIV	GGNNCC	2 cut(s)	294, 389
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	244, 327, 336
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	294, 389
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	210, 455
SatI	GCNGC	3 cut(s)	243, 326, 335
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	91, 194, 298, 309, 327
SfaNI	GCATC	3 cut(s)	108, 151, 345
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	4 cut(s)	42, 159, 287, 334
SspMI	CTAG	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	166, 300
TauI	GCSGC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	210, 455
Tru9I	TTAA	2 cut(s)	210, 455
TscAI	CASTG	2 cut(s)	207, 262
TseI	GCWGC	2 cut(s)	242, 325
TspDTI	ATGAA	6 cut(s)	72, 81, 102, 140, 161, 461
TspRI	CASTG	2 cut(s)	207, 262
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.