Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Reverse (-)

15787577 .. 15788215

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGAATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTTTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTATTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTTCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGACTCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.54

Weight (kDa)

9.04

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	1.8e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AciI	CCGC	4 cut(s)	82, 399, 546, 624
AclWI	GGATC	4 cut(s)	188, 363, 382, 460
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	4 cut(s)	130, 193, 579, 604
AluI	AGCT	4 cut(s)	130, 193, 579, 604
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	4 cut(s)	188, 363, 382, 460
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 512
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 424, 530
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	2 cut(s)	51, 624
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	2 cut(s)	52, 625
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 622
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	173, 639
Bpu1102I	GCTNAGC	1 cut(s)	580
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	191, 258
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	300, 581
Bsp143I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Bsp1720I	GCTNAGC	1 cut(s)	580
BspACI	CCGC	4 cut(s)	82, 399, 546, 624
BspCNI	CTCAG	1 cut(s)	593
BspLI	GGNNCC	3 cut(s)	6, 155, 622
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 460
BspT104I	TTCGAA	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Bst4CI	ACNGT	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	580
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	7 cut(s)	109, 183, 213, 311, 358, 377, 455
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 590, 632
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	3 cut(s)	180, 374, 452
BstYI	RGATCY	3 cut(s)	180, 374, 452
BtsCI	GGATG	1 cut(s)	37
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	8 cut(s)	70, 293, 301, 350, 463, 493, 497, 520
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	580
DpnI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 454
DpnII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	581
FaeI	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	8 cut(s)	69, 292, 300, 349, 462, 492, 496, 519
Fnu4HI	GCNGC	2 cut(s)	51, 624
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	51, 624
GluI	GCNGC	2 cut(s)	51, 624
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	173, 639
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
HinfI	GANTC	3 cut(s)	94, 117, 629
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	335, 512
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	5 cut(s)	220, 241, 255, 257, 618
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 590, 632
HpyF3I	CTNAG	1 cut(s)	580
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
Kzo9I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
LmnI	GCTCC	2 cut(s)	84, 620
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	334, 515, 548
MalI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 454
MboI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
MboII	GAAGA	4 cut(s)	280, 369, 387, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 452
MhlI	GDGCHC	2 cut(s)	300, 581
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	88, 623
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 346, 492, 496, 533, 588
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	3 cut(s)	366, 420, 637
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	3 cut(s)	193, 401, 626
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 590, 632
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
NlaIII	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
NlaIV	GGNNCC	3 cut(s)	6, 155, 622
NmeAIII	GCCGAG	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	255
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 625
PleI	GAGTC	2 cut(s)	88, 623
PpsI	GAGTC	2 cut(s)	88, 623
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 622
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	180, 374, 452
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	366, 420, 637
SatI	GCNGC	2 cut(s)	51, 624
Sau3AI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	2 cut(s)	88, 623
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	300, 581
SfcI	CTRYAG	2 cut(s)	102, 162
Sfr274I	CTCGAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	2 cut(s)	153, 276
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	255, 574
SmoI	CTYRAG	2 cut(s)	255, 574
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	82, 399, 546, 624
SstI	GAGCTC	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	213, 256, 284, 534
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	366, 420, 637
Tru9I	TTAA	3 cut(s)	366, 420, 637
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	281, 473, 536
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.