Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Forward (+)

5539644 .. 5540519

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTCTTCTTTTGTGCTCTACTCCCCTGGCGCTCAACGCCGTGTCCTCTCGTCCTTCAAATGTCACCGCCGCTACTCACAGGATGCACATGAATCCCATACATCCCAAATGTTTCAGTGGAGTGCGACTTCAACTGCCCATGGTTGCCAAAAAGTCGGTTTCACTGGTTGTGAAGGCTTCTGAGGGTGCCGAGGCCCCTTCAGAGGTGGTACCTGTTGACAAGCTTCCCTTGGAGTCAAAGCTGCAGGAAAGGCTGGAGCAGAAGACGCGGATGAAGCTGGCCAAGAAGATAAGACTTCGGAGGAAGAGACTTGTGCGCAAGCGAAAACTCAGAAAGAAAGGGCGATGGCCTCCTTCAAAGATGAACAAGTTGAAGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.49

Weight (kDa)

11.56

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	320
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	2 cut(s)	188, 211
AccII	CGCG	1 cut(s)	271
AciI	CCGC	3 cut(s)	69, 72, 271
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	60, 134, 360, 376
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	226, 244, 280
AluI	AGCT	3 cut(s)	226, 244, 280
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	3 cut(s)	195, 282, 350
ApeKI	GCWGC	1 cut(s)	244
Asp718I	GGTACC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	34, 321
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	2 cut(s)	188, 211
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	2 cut(s)	72, 245
BlsI	GCNGC	2 cut(s)	73, 246
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	190, 198, 213
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	27, 141, 192, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	27, 141, 192, 231
BseGI	GGATG	3 cut(s)	90, 103, 279
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	174, 346
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	197, 284, 352
BshNI	GGYRCC	2 cut(s)	188, 211
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	197, 284, 352
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	3 cut(s)	69, 72, 271
BspANI	GGCC	3 cut(s)	197, 284, 352
BspCNI	CTCAG	2 cut(s)	175, 345
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	190, 198, 213
BspMAI	CTGCAG	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	188, 211
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	27, 141, 192, 231
BssT1I	CCWWGG	2 cut(s)	141, 231
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	12, 302
BstC8I	GCNNGC	2 cut(s)	282, 323
BstDEI	CTNAG	2 cut(s)	183, 332
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	90, 103, 279
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 321
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 253, 268, 277
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	245
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	197, 284, 352
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	90, 103, 279
BtsIMutI	CAGTG	2 cut(s)	124, 164
Cac8I	GCNNGC	2 cut(s)	282, 323
CfoI	GCGC	2 cut(s)	34, 321
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	91, 142
CviJI	RGCY	9 cut(s)	5, 179, 197, 226, 244, 256, 280, 284, 352
CviKI_1	RGCY	9 cut(s)	5, 179, 197, 226, 244, 256, 280, 284, 352
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	183, 332
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	12, 302
EarI	CTCTTC	2 cut(s)	12, 302
Eco130I	CCWWGG	2 cut(s)	141, 231
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	141, 231
ErhI	CCWWGG	2 cut(s)	141, 231
FaeI	CATG	2 cut(s)	94, 145
FaiI	YATR	3 cut(s)	92, 101, 143
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	2 cut(s)	90, 141
Fnu4HI	GCNGC	2 cut(s)	72, 245
FokI	GGATG	3 cut(s)	90, 97, 286
Fsp4HI	GCNGC	2 cut(s)	72, 245
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	2 cut(s)	33, 320
GluI	GCNGC	2 cut(s)	72, 245
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	197, 284, 352
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	2 cut(s)	34, 321
Hin1II	CATG	2 cut(s)	94, 145
Hin6I	GCGC	2 cut(s)	32, 319
HinP1I	GCGC	2 cut(s)	32, 319
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	94, 236
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	184, 205, 303, 335, 386
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	4 cut(s)	66, 169, 210, 366
HpyCH4V	TGCA	2 cut(s)	88, 247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 253, 268, 277
HpyF3I	CTNAG	2 cut(s)	183, 332
Hsp92II	CATG	2 cut(s)	94, 145
HspAI	GCGC	2 cut(s)	32, 319
KpnI	GGTACC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	8 cut(s)	14, 41, 67, 152, 228, 233, 242, 266
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	277, 301, 319
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	58, 178, 187, 199, 297, 363
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	4 cut(s)	38, 253, 268, 277
NcoI	CCATGG	1 cut(s)	141
NlaIII	CATG	2 cut(s)	94, 145
NlaIV	GGNNCC	3 cut(s)	190, 198, 213
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	73, 246
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	190, 198, 213
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	72, 245
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	210, 217, 228, 246, 282
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	245
SsiI	CCGC	3 cut(s)	69, 72, 271
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	141, 231
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	2 cut(s)	124, 171
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	107, 290, 380
TspRI	CASTG	2 cut(s)	124, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.