Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014586

Physical Location & Seq

Genomic Coordinates Forward (+)

46499456 .. 46500535

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTCTTCTTTTGTGCTCTAATCACCTGGCGCTGAACGCCGTGTCCTCTCGTCCAACATCGCCTTCAAATGTCACCGCCGCTATTTACAGGATGCACATGAATCCCATCATTGACCTACACCCGAAATCTTTCAATGGAGTTCGACTTAACATGCCCATAGCTGTCAAAAAGTCGGTTTCACTAGTTGTCAAGGCTTCTTCCGATCCAATTGAGGGCGCTGAGGCCCCTTCAGATAGCAAGGACGAGGTGGTACCTGTTGATAAGCTTCCATTGGAGTCAAAGCTGCAAGAAAGGCTGGAGCAGAAGACGAGGATGAAGCTGGCCAAGAAAATAAGACTTCGAAGGAAAAGACTTGTTCGCAAACGAAAACTCAGAAAGAAAGGGCGATGGCCTCCTTCAAAGATGAACAAGTTGAAGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0034357 GO:0034622 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0110102 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.07

Weight (kDa)

10.94

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56910
fragaria_vesca	FvH4_7g05170
malus_domestica	MD02G1260500.v1.1 MD07G1060800.v1.1
prunus_persica	Prupe.2G065900_v2.0.a1
pyrus_communis	pycom02g22240 pycom07g04660
rosa_chinensis	RchiOBHm_Chr1g0331611
rosa_laevigata	RLG00000029726
rosa_multiflora	Rmu_sc0005044.1_g000016
rosa_roxburghii	Rroxscaffold_4G00319020
rosa_rugosa	Rorug01G0095300
rosa_samantha	Rh1AG118900 Rh1BG090600 Rh1CG113900 Rh1DG123300
rosa_wichuraiana	Rw1G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	2 cut(s)	78, 81
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	69, 136, 402, 418
AhlI	ACTAGT	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	164, 268, 286, 322
AluI	AGCT	4 cut(s)	164, 268, 286, 322
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	225, 324, 392
ApeKI	GCWGC	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	34, 221
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	17, 67
AsuII	TTCGAA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	116, 384
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	29
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	35, 222
BisI	GCNGC	2 cut(s)	81, 287
BlsI	GCNGC	2 cut(s)	82, 288
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	228, 255
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	99, 321
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	213, 388
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	3 cut(s)	227, 326, 394
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	3 cut(s)	227, 326, 394
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	78, 81
BspANI	GGCC	3 cut(s)	227, 326, 394
BspCNI	CTCAG	2 cut(s)	214, 387
BspLI	GGNNCC	2 cut(s)	228, 255
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	253
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	222, 374
BstF5I	GGATG	2 cut(s)	99, 321
BstH2I	RGCGCY	2 cut(s)	35, 222
BstHHI	GCGC	2 cut(s)	34, 221
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 295
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	227, 326, 394
BtgZI	GCGATG	2 cut(s)	45, 403
BtsCI	GGATG	2 cut(s)	99, 321
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	2 cut(s)	34, 221
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	100, 154
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	222, 374
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	103, 157
FaiI	YATR	3 cut(s)	101, 155, 161
FatI	CATG	2 cut(s)	99, 153
Fnu4HI	GCNGC	2 cut(s)	81, 287
FokI	GGATG	2 cut(s)	106, 328
Fsp4HI	GCNGC	2 cut(s)	81, 287
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	33, 220
GluI	GCNGC	2 cut(s)	81, 287
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	2 cut(s)	35, 222
HaeIII	GGCC	3 cut(s)	227, 326, 394
HhaI	GCGC	2 cut(s)	34, 221
Hin1II	CATG	2 cut(s)	103, 157
Hin6I	GCGC	2 cut(s)	32, 219
HinP1I	GCGC	2 cut(s)	32, 219
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	103, 278
HphI	GGTGA	2 cut(s)	17, 67
Hpy188I	TCNGA	4 cut(s)	205, 235, 377, 428
HpyAV	CCTTC	4 cut(s)	75, 240, 339, 408
HpyCH4V	TGCA	2 cut(s)	97, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 295
HpyF3I	CTNAG	2 cut(s)	222, 374
Hsp92II	CATG	2 cut(s)	103, 157
HspAI	GCGC	2 cut(s)	32, 219
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	14, 41, 76, 270, 284, 308
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	192, 319
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	58, 208, 217, 241, 306, 405
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	38, 295
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	103, 157
NlaIV	GGNNCC	2 cut(s)	228, 255
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	82, 288
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	228, 255
PspPI	GGNCC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	81, 287
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	30, 120, 166, 252, 259, 270, 288, 324
SfaNI	GCATC	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	343
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	78, 81
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	27
TaqI	TCGA	2 cut(s)	145, 343
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	116, 332, 422
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.