AT3G57990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013312
Physical Location & Seq
Reverse (-)
21469756 .. 21471694
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57990.1

Sequence Viewer

Length: 1104 bp
ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAAGTTCCTTTAAGCATCTTAGGTTTACCCTTTCAATCTGGAATCGTCGCCGGAGAATCCAAGGAGCTCAGTCTCAATCTCTCCACTTTCTTCGAATCTGGCCCTTCTCTCAAAGTCGCTTACCGTCCAAACGATTCGTGGAATCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCTCCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTCAAGGAAACCCTAGCTTTATGCTCCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCTTCGTCTGGATTTGAGAGGAATTTGATCAAATCGATGAATGGATCTGTTTCCGAAGATGATTCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTAGAAAAGTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCTGGCGTTGAGGTTGCGGCGAGGACGTCTCTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGCGTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCTATTTCGTTGAGGAGATTCCCTTTTTTGGTGATGAATAAAATAGGAATCGAACACGTGGACGGCGCAGATGCTAAAGTGACCAAATCCACTGGTGATCCGGGTAAAGTTTCGGGTCCGGCTCAGTTCACAACAAGTGGTGACGTGGCGGAGGTGATAGAGGAGCTTCGAACGGAGAACAAGCAGTTAAAGAGAGCCGTTGAAGATCTCCGGGAAGTAATATCAAACGTCCGTCCATACTCGCCGGCGACAATTGATTACGGATCACACTCGAAGTATCGCGAATCCGAGAGGAACAACAACAACAACAACAACAACAACAACAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACAACGTCTGATTACGGTGGGAAGAAAAGCAAGGAAGAGGGCAATGTAGCTGAGGAGCTGAAGAAAGCTTTGAAAGGAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

39.89

Weight (kDa)

9.42

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57990
fragaria_vesca FvH4_6g22460
malus_domestica MD12G1059200.v1.1 MD14G1058800.v1.1
prunus_persica Prupe.7G076000_v2.0.a1
pyrus_communis pycom12g05180 pycom14g04760
rosa_chinensis RchiOBHm_Chr3g0479871
rosa_laevigata RLG00000023529
rosa_multiflora Rmu_co8502759.1_g000001
rosa_roxburghii Rroxscaffold_6G00401940
rosa_rugosa Rorug03G0179100
rosa_samantha Rh3AG230000 Rh3BG262700 Rh3CG260000 Rh3DG256100
rosa_wichuraiana Rw0G015260 Rw0G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 557
AccII CGCG 3 cut(s) 576, 627, 927
AciI CCGC 5 cut(s) 449, 462, 465, 545, 794
AclWI GGATC 6 cut(s) 229, 235, 409, 629, 737, 916
AcsI RAATTY 3 cut(s) 272, 379, 586
AcuI CTGAAG 1 cut(s) 1097
AcvI CACGTG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 554
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 329, 569, 673
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 7 cut(s) 86, 249, 277, 319, 586, 848, 1090
AjiI CACGTC 1 cut(s) 790
AluBI AGCT 9 cut(s) 118, 252, 303, 811, 992, 1067, 1075, 1085, 1097
AluI AGCT 9 cut(s) 118, 252, 303, 811, 992, 1067, 1075, 1085, 1097
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 3 cut(s) 128, 357, 561
AlwI GGATC 6 cut(s) 229, 235, 409, 629, 737, 916
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 644, 1005, 1097
ApoI RAATTY 3 cut(s) 272, 379, 586
Asp700I GAANNNNTTC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 283
AspLEI GCGC 3 cut(s) 269, 578, 713
AspS9I GGNCC 2 cut(s) 152, 761
AsuC2I CCSGG 2 cut(s) 747, 857
AsuHPI GGTGA 4 cut(s) 688, 752, 797, 811
AsuII TTCGAA 2 cut(s) 144, 814
AvaII GGWCC 1 cut(s) 761
AvrII CCTAGG 1 cut(s) 283
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 3 cut(s) 631, 1017, 1084
BceAI ACGGC 5 cut(s) 478, 563, 657, 724, 827
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 2 cut(s) 747, 857
BcoDI GTCTC 3 cut(s) 128, 357, 561
BfaI CTAG 2 cut(s) 284, 300
BfoI RGCGCY 1 cut(s) 270
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 850
BisI GCNGC 5 cut(s) 463, 546, 645, 1006, 1098
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 5 cut(s) 464, 547, 646, 1007, 1099
Bme1390I CCNGG 2 cut(s) 747, 857
Bme18I GGWCC 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 152, 761
BmiI GGNNCC 2 cut(s) 609, 762
BmrFI CCNGG 2 cut(s) 747, 857
BmsI GCATC 4 cut(s) 17, 75, 449, 706
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 2 cut(s) 429, 528
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu14I TTCGAA 2 cut(s) 144, 814
BpuMI CCSGG 2 cut(s) 747, 857
Bsa29I ATCGAT 2 cut(s) 11, 392
BsaAI YACGTR 1 cut(s) 703
BsaBI GATNNNNATC 3 cut(s) 226, 526, 633
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 111, 283
BsaWI WCCGGW 2 cut(s) 218, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 569, 673
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 1 cut(s) 742
Bse3DI GCAATG 1 cut(s) 1066
Bse8I GATNNNNATC 3 cut(s) 226, 526, 633
BseCI ATCGAT 2 cut(s) 11, 392
BseDI CCNNGG 2 cut(s) 111, 283
BseGI GGATG 1 cut(s) 464
BseJI GATNNNNATC 3 cut(s) 226, 526, 633
BseLI CCNNNNNNNGG 3 cut(s) 329, 569, 673
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 3 cut(s) 133, 782, 1059
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 3 cut(s) 673, 821, 1085
BseXI GCAGC 3 cut(s) 631, 1017, 1084
Bsh1236I CGCG 3 cut(s) 576, 627, 927
BshFI GGCC 1 cut(s) 153
BshVI ATCGAT 2 cut(s) 11, 392
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 7 cut(s) 102, 219, 592, 746, 764, 856, 890
BslI CCNNNNNNNGG 3 cut(s) 329, 569, 673
BsmAI GTCTC 3 cut(s) 128, 357, 561
BsmBI CGTCTC 1 cut(s) 561
BsnI GGCC 1 cut(s) 153
Bsp119I TTCGAA 2 cut(s) 144, 814
Bsp1286I GDGCHC 1 cut(s) 120
Bsp68I TCGCGA 1 cut(s) 927
BspACI CCGC 5 cut(s) 449, 462, 465, 545, 794
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 3 cut(s) 132, 781, 1060
BspDI ATCGAT 2 cut(s) 11, 392
BspFNI CGCG 3 cut(s) 576, 627, 927
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 609, 762
BspPI GGATC 6 cut(s) 229, 235, 409, 629, 737, 916
BspQI GCTCTTC 1 cut(s) 21
BspT104I TTCGAA 2 cut(s) 144, 814
BsrDI GCAATG 1 cut(s) 1066
BsrFI RCCGGY 1 cut(s) 889
BsrI ACTGG 1 cut(s) 742
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 2 cut(s) 111, 283
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 2 cut(s) 111, 283
Bst4CI ACNGT 3 cut(s) 176, 487, 1034
Bst6I CTCTTC 2 cut(s) 21, 1047
BstACI GRCGYC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 703
BstBI TTCGAA 2 cut(s) 144, 814
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 4 cut(s) 70, 119, 768, 1068
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 3 cut(s) 576, 627, 927
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 269, 578, 713
BstMAI GTCTC 3 cut(s) 128, 357, 561
BstSCI CCNGG 2 cut(s) 745, 855
BstUI CGCG 3 cut(s) 576, 627, 927
BstV1I GCAGC 3 cut(s) 631, 1017, 1084
BstX2I RGATCY 2 cut(s) 401, 850
BstYI RGATCY 2 cut(s) 401, 850
Bsu15I ATCGAT 2 cut(s) 11, 392
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 153
BsuTUI ATCGAT 2 cut(s) 11, 392
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 735
BtuMI TCGCGA 1 cut(s) 927
Cac8I GCNNGC 1 cut(s) 891
CciI TCATGA 1 cut(s) 261
CfoI GCGC 3 cut(s) 269, 578, 713
Cfr10I RCCGGY 1 cut(s) 889
Cfr13I GGNCC 2 cut(s) 152, 761
ClaI ATCGAT 2 cut(s) 11, 392
CseI GACGC 2 cut(s) 582, 633
CviAII CATG 1 cut(s) 262
DdeI CTNAG 4 cut(s) 70, 119, 768, 1068
Eam1104I CTCTTC 2 cut(s) 21, 1047
EarI CTCTTC 2 cut(s) 21, 1047
EciI GGCGGA 2 cut(s) 480, 809
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 111, 283
Eco24I GRGCYC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 761
Eco47III AGCGCT 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 1097
Eco72I CACGTG 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 272
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 111, 283
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 111, 283
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 257, 263, 308, 883
FatI CATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 463, 546, 645, 1006, 1098
FokI GGATG 1 cut(s) 471
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 5 cut(s) 463, 546, 645, 1006, 1098
FspBI CTAG 2 cut(s) 284, 300
GlaI GCGC 3 cut(s) 268, 577, 712
GluI GCNGC 5 cut(s) 463, 546, 645, 1006, 1098
GsuI CTGGAG 2 cut(s) 429, 528
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 153
HapII CCGG 7 cut(s) 102, 219, 592, 746, 764, 856, 890
HgaI GACGC 2 cut(s) 582, 633
HhaI GCGC 3 cut(s) 269, 578, 713
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 3 cut(s) 267, 576, 711
HinP1I GCGC 3 cut(s) 267, 576, 711
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 9 cut(s) 93, 107, 146, 185, 193, 419, 663, 693, 929
HpaII CCGG 7 cut(s) 102, 219, 592, 746, 764, 856, 890
HphI GGTGA 4 cut(s) 688, 752, 797, 811
Hpy166II GTNNAC 4 cut(s) 77, 498, 706, 774
Hpy188I TCNGA 5 cut(s) 243, 412, 623, 934, 1027
Hpy188III TCNNGA 7 cut(s) 23, 90, 225, 262, 366, 926, 987
Hpy8I GTNNAC 4 cut(s) 77, 498, 706, 774
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 3 cut(s) 176, 487, 1034
HpyCH4IV ACGT 5 cut(s) 554, 702, 789, 873, 1022
HpyF3I CTNAG 4 cut(s) 70, 119, 768, 1068
HpySE526I ACGT 5 cut(s) 554, 702, 789, 873, 1022
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 3 cut(s) 267, 576, 711
KroI GCCGGC 1 cut(s) 889
KroNI GCCGGC 1 cut(s) 891
Ksp22I TGATCA 1 cut(s) 384
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 6 cut(s) 115, 315, 808, 1002, 1072, 1094
Lsp1109I GCAGC 3 cut(s) 631, 1017, 1084
LweI GCATC 4 cut(s) 17, 75, 449, 706
MaeI CTAG 2 cut(s) 284, 300
MaeII ACGT 5 cut(s) 554, 702, 789, 873, 1022
MaeIII GTNAC 3 cut(s) 481, 724, 785
MboII GAAGA 9 cut(s) 38, 133, 351, 414, 425, 860, 1051, 1064, 1090
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 2 cut(s) 401, 850
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 272, 326, 379, 586, 897
MmeI TCCRAC 1 cut(s) 662
MreI CGCCGGCG 1 cut(s) 889
MroNI GCCGGC 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 2 cut(s) 62, 833
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 7 cut(s) 102, 219, 592, 746, 764, 856, 890
MspR9I CCNGG 2 cut(s) 747, 857
MunI CAATTG 1 cut(s) 897
MvnI CGCG 3 cut(s) 576, 627, 927
NaeI GCCGGC 1 cut(s) 891
NciI CCSGG 2 cut(s) 747, 857
NgoMIV GCCGGC 1 cut(s) 889
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 609, 762
NmuCI GTSAC 3 cut(s) 481, 724, 785
NruI TCGCGA 1 cut(s) 927
NspV TTCGAA 2 cut(s) 144, 814
PagI TCATGA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PdiI GCCGGC 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 9 cut(s) 93, 107, 146, 185, 193, 419, 663, 693, 929
PflFI GACNNNGTC 1 cut(s) 1021
PfoI TCCNGGA 1 cut(s) 855
PkrI GCNGC 5 cut(s) 464, 547, 646, 1007, 1099
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 703
Psp124BI GAGCTC 1 cut(s) 120
PspCI CACGTG 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 609, 762
PspPI GGNCC 2 cut(s) 152, 761
PsuI RGATCY 2 cut(s) 401, 850
PsyI GACNNNGTC 1 cut(s) 1021
RruI TCGCGA 1 cut(s) 927
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 62, 833
SatI GCNGC 5 cut(s) 463, 546, 645, 1006, 1098
Sau96I GGNCC 2 cut(s) 152, 761
ScrFI CCNGG 2 cut(s) 747, 857
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 4 cut(s) 17, 75, 449, 706
SfuI TTCGAA 2 cut(s) 144, 814
SgrAI CRCCGGYG 1 cut(s) 889
SinI GGWCC 1 cut(s) 761
Sse9I AATT 5 cut(s) 272, 326, 379, 586, 897
SsiI CCGC 5 cut(s) 449, 462, 465, 545, 794
SspMI CTAG 2 cut(s) 284, 300
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 745, 855
StyI CCWWGG 2 cut(s) 111, 283
TaaI ACNGT 3 cut(s) 176, 487, 1034
TaiI ACGT 5 cut(s) 557, 705, 792, 876, 1025
TaqI TCGA 9 cut(s) 11, 144, 392, 425, 633, 696, 814, 917, 986
TasI AATT 5 cut(s) 272, 326, 379, 586, 897
TauI GCSGC 2 cut(s) 465, 548
TfiI GAWTC 9 cut(s) 93, 107, 146, 185, 193, 419, 663, 693, 929
Tru1I TTAA 2 cut(s) 62, 833
Tru9I TTAA 2 cut(s) 62, 833
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 3 cut(s) 481, 724, 785
TseI GCWGC 3 cut(s) 644, 1005, 1097
Tsp45I GTSAC 3 cut(s) 481, 724, 785
TspDTI ATGAA 4 cut(s) 17, 29, 410, 695
TspGWI ACGGA 4 cut(s) 629, 833, 866, 921
TspRI CASTG 1 cut(s) 742
Tth111I GACNNNGTC 1 cut(s) 1021
VpaK11BI GGWCC 1 cut(s) 761
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 3 cut(s) 272, 379, 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 186
XmaJI CCTAGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 284, 300
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.