FvH4_6g22460

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
16135618 .. 16137646
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22460.t1

Sequence Viewer

Length: 1017 bp
ATGAAAGCTTCAGTCAAATTCCGGGAGGACCAGAAGCCACTGCTCCGGGCCAAAGTCCCCCTCAGCATCTTGGGCCTCCCCTTCCAATCCGGAATCGTCGCCGGCGAGTCCAAGGAGCTCACTCTCAACCTCGCCACCTTCTTCGAATCCGGGCCGTCCATTCGCGTCGCCTATCGCCCCAACGACACGTGGAACCCCTTCTCCCTCGTCGTCAAGACCGGCACCGGCTCCCTCGGCTCTCCGATCAACTCCTCCATGCTCATGAGCGCCGAGTTCAATCTCCTCAACCACAACCCTAGCTTCATGCTCCACTTCAAGCCTCAGTTTGGGGACTTCTCCGTCAAGAAGTCGTCGCAGTCGTCTGTCTTGGATAAGATGCTCGGGTCGCAAGACGGCGTCGTTTCGCCGGAGCCTCCGACGATTAAGGCCGTGGAGGCGCCGGCCGGGGAGGGATTGTTTTCCGGGAAGAAAATTACGGTTCTGCCCTCCCAGAGCGCTGCCTCCGGGGCTGTGGCCGGTCTGCTCTCCGGGATGGAGGTGTCGGCGAGGACGTCGGTGCCGGTGAGGAATCGTGCCGTGGTGAGCTTGCGGTGGGGGGTGAGGGTTCCGGCGGAGCTGAAGAGCGGAGATTATGGGACGGCGGGGATTGCGTTTCAGAAGATCCCGTTCCTGGTGATGAACAAGATCGGGATCGAGCACGTGGACGGTGGGGATTTGAAGGGAGGCAACACGAAAGCTGCGGCGGCTGGTGGGGCGGTGACGTTTCCGGGGAATGTGGAGGTTGCGGAGGCTTGTTTCACTGTGAAGCGTCAGTTGGAGGTTTTACAGAGTGAGAATGGGTTGCTGAGGAAAGCTGTGGAGGATCTTCGGCAGGAGATTGCCGGAGGGAGTTTCAATTCGGGGAAGTACCGTGGGATGGAGAGGAGTAGTGGGAATTGGGGATCTAGCAACAATGAGAAGAAATCGCAGGAGGGAGATGTGAGTGAGGAGTTGAAGAAGGCACTGATGGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

35.8

Weight (kDa)

9.37

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013312)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 1 cut(s) 554
AccB1I GGYRCC 3 cut(s) 221, 436, 556
AccBSI CCGCTC 1 cut(s) 624
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 8 cut(s) 589, 611, 624, 641, 740, 743, 755, 785
AclWI GGATC 4 cut(s) 655, 698, 870, 949
AcoI YGGCCR 2 cut(s) 441, 513
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 638
AcvI CACGTG 2 cut(s) 189, 700
AcyI GRCGYC 3 cut(s) 396, 437, 551
AfaI GTAC 1 cut(s) 908
AfeI AGCGCT 1 cut(s) 496
AfiI CCNNNNNNNGG 3 cut(s) 326, 670, 916
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 5 cut(s) 277, 316, 718, 895, 994
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 7 cut(s) 8, 118, 300, 585, 616, 737, 854
AluI AGCT 7 cut(s) 8, 118, 300, 585, 616, 737, 854
Alw21I GWGCWC 2 cut(s) 120, 699
AlwI GGATC 4 cut(s) 655, 698, 870, 949
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 496
AoxI GGCC 6 cut(s) 48, 73, 152, 426, 441, 513
ApeKI GCWGC 2 cut(s) 497, 737
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 269, 439, 497
AspS9I GGNCC 4 cut(s) 28, 48, 73, 152
AsuC2I CCSGG 8 cut(s) 23, 47, 151, 445, 463, 505, 529, 768
AsuHPI GGTGA 5 cut(s) 574, 592, 610, 685, 769
AsuII TTCGAA 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 28
BanI GGYRCC 3 cut(s) 221, 436, 556
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 2 cut(s) 189, 700
Bbv12I GWGCWC 2 cut(s) 120, 699
BbvCI CCTCAGC 2 cut(s) 62, 845
BbvI GCAGC 2 cut(s) 484, 724
BccI CCATC 3 cut(s) 526, 910, 1000
BceAI ACGGC 5 cut(s) 139, 409, 413, 560, 654
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 8 cut(s) 23, 47, 151, 445, 463, 505, 529, 768
BfaI CTAG 2 cut(s) 297, 945
BfoI RGCGCY 3 cut(s) 270, 440, 498
BglI GCCNNNNNGGC 2 cut(s) 434, 506
BisI GCNGC 4 cut(s) 498, 738, 741, 744
BlsI GCNGC 4 cut(s) 499, 739, 742, 745
Bme1390I CCNGG 9 cut(s) 23, 47, 151, 445, 463, 505, 529, 671, 768
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 28, 48, 73, 152
BmiI GGNNCC 7 cut(s) 194, 223, 229, 411, 438, 558, 606
BmrFI CCNGG 9 cut(s) 23, 47, 151, 445, 463, 505, 529, 671, 768
BmsI GCATC 2 cut(s) 75, 366
Bpu10I CCTNAGC 2 cut(s) 62, 845
Bpu14I TTCGAA 1 cut(s) 144
BpuMI CCSGG 8 cut(s) 23, 47, 151, 445, 463, 505, 529, 768
BsaAI YACGTR 2 cut(s) 189, 700
BsaBI GATNNNNATC 1 cut(s) 689
BsaHI GRCGYC 3 cut(s) 396, 437, 551
BsaJI CCNNGG 8 cut(s) 111, 232, 429, 444, 504, 576, 767, 910
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 440, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 670, 916
Bse118I RCCGGY 6 cut(s) 101, 218, 224, 439, 515, 559
Bse8I GATNNNNATC 1 cut(s) 689
BseAI TCCGGA 1 cut(s) 89
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 8 cut(s) 111, 232, 429, 444, 504, 576, 767, 910
BseGI GGATG 2 cut(s) 537, 921
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 3 cut(s) 326, 670, 916
BseMII CTCAG 3 cut(s) 76, 335, 836
BseRI GAGGAG 4 cut(s) 241, 272, 937, 1001
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 484, 724
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 6 cut(s) 50, 75, 154, 428, 443, 515
BshNI GGYRCC 3 cut(s) 221, 436, 556
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 120, 699
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 3 cut(s) 41, 344, 649
BslI CCNNNNNNNGG 3 cut(s) 326, 670, 916
BsmFI GGGAC 3 cut(s) 41, 344, 649
BsnI GGCC 6 cut(s) 50, 75, 154, 428, 443, 515
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 120, 699
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 6 cut(s) 243, 660, 684, 690, 862, 941
BspACI CCGC 8 cut(s) 589, 611, 624, 641, 740, 743, 755, 785
BspANI GGCC 6 cut(s) 50, 75, 154, 428, 443, 515
BspCNI CTCAG 3 cut(s) 75, 334, 837
BspEI TCCGGA 1 cut(s) 89
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 7 cut(s) 194, 223, 229, 411, 438, 558, 606
BspPI GGATC 4 cut(s) 655, 698, 870, 949
BspQI GCTCTTC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 3 cut(s) 221, 436, 556
BsrBI CCGCTC 1 cut(s) 624
BsrFI RCCGGY 6 cut(s) 101, 218, 224, 439, 515, 559
BssAI RCCGGY 6 cut(s) 101, 218, 224, 439, 515, 559
BssECI CCNNGG 8 cut(s) 111, 232, 429, 444, 504, 576, 767, 910
BssMI GATC 6 cut(s) 243, 660, 684, 690, 862, 941
BssNI GRCGYC 3 cut(s) 396, 437, 551
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 478, 707, 802, 911
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 3 cut(s) 396, 437, 551
BstBAI YACGTR 2 cut(s) 189, 700
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 103, 441, 587
BstDEI CTNAG 3 cut(s) 62, 321, 845
BstDSI CCRYGG 3 cut(s) 429, 576, 910
BstF5I GGATG 2 cut(s) 537, 921
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 3 cut(s) 270, 440, 498
BstHHI GCGC 3 cut(s) 269, 439, 497
BstKTI GATC 6 cut(s) 246, 663, 687, 693, 865, 944
BstMBI GATC 6 cut(s) 243, 660, 684, 690, 862, 941
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 8 cut(s) 72, 234, 385, 434, 506, 647, 743, 752
BstNI CCWGG 1 cut(s) 671
BstSCI CCNGG 9 cut(s) 21, 45, 149, 443, 461, 503, 527, 669, 766
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 484, 724
BstX2I RGATCY 3 cut(s) 660, 862, 941
BstYI RGATCY 3 cut(s) 660, 862, 941
BstZI CGGCCG 1 cut(s) 441
BsuRI GGCC 6 cut(s) 50, 75, 154, 428, 443, 515
BtgI CCRYGG 3 cut(s) 429, 576, 910
BtsCI GGATG 2 cut(s) 537, 921
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 798, 1001
Cac8I GCNNGC 3 cut(s) 103, 441, 587
CciI TCATGA 1 cut(s) 261
CfoI GCGC 3 cut(s) 269, 439, 497
Cfr10I RCCGGY 6 cut(s) 101, 218, 224, 439, 515, 559
Cfr13I GGNCC 4 cut(s) 28, 48, 73, 152
CseI GACGC 3 cut(s) 154, 385, 797
Csp6I GTAC 1 cut(s) 907
CviAII CATG 3 cut(s) 256, 262, 304
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 3 cut(s) 62, 321, 845
DinI GGCGCC 1 cut(s) 438
DpnI GATC 6 cut(s) 245, 662, 686, 692, 864, 943
DpnII GATC 6 cut(s) 243, 660, 684, 690, 862, 941
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 441, 513
EagI CGGCCG 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
EciI GGCGGA 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 496
Eco52I CGGCCG 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 638
Eco72I CACGTG 2 cut(s) 189, 700
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 259, 265, 307
FaiI YATR 4 cut(s) 257, 263, 305, 633
FaqI GGGAC 3 cut(s) 41, 344, 649
FatI CATG 3 cut(s) 255, 261, 303
FauI CCCGC 1 cut(s) 634
Fnu4HI GCNGC 4 cut(s) 498, 738, 741, 744
FokI GGATG 2 cut(s) 544, 928
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 498, 738, 741, 744
FspBI CTAG 2 cut(s) 297, 945
GlaI GCGC 3 cut(s) 268, 438, 496
GluI GCNGC 4 cut(s) 498, 738, 741, 744
HaeII RGCGCY 3 cut(s) 270, 440, 498
HaeIII GGCC 6 cut(s) 50, 75, 154, 428, 443, 515
HgaI GACGC 3 cut(s) 154, 385, 797
HhaI GCGC 3 cut(s) 269, 439, 497
Hin1I GRCGYC 3 cut(s) 396, 437, 551
Hin1II CATG 3 cut(s) 259, 265, 307
Hin6I GCGC 3 cut(s) 267, 437, 495
HinP1I GCGC 3 cut(s) 267, 437, 495
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 93, 107, 146, 568
HphI GGTGA 5 cut(s) 574, 592, 610, 685, 769
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 3 cut(s) 243, 417, 657
Hpy188III TCNNGA 5 cut(s) 90, 214, 262, 343, 688
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 7 cut(s) 101, 170, 212, 355, 401, 421, 556
HpyAV CCTTC 5 cut(s) 91, 148, 208, 712, 991
HpyCH4III ACNGT 4 cut(s) 478, 707, 802, 911
HpyCH4IV ACGT 4 cut(s) 188, 551, 699, 761
HpyF10VI GCNNNNNNNGC 8 cut(s) 72, 234, 385, 434, 506, 647, 743, 752
HpyF3I CTNAG 3 cut(s) 62, 321, 845
HpySE526I ACGT 4 cut(s) 188, 551, 699, 761
Hsp92I GRCGYC 3 cut(s) 396, 437, 551
Hsp92II CATG 3 cut(s) 259, 265, 307
HspAI GCGC 3 cut(s) 267, 437, 495
KasI GGCGCC 1 cut(s) 436
Kpn2I TCCGGA 1 cut(s) 89
KroI GCCGGC 2 cut(s) 101, 439
KroNI GCCGGC 2 cut(s) 103, 441
Kzo9I GATC 6 cut(s) 243, 660, 684, 690, 862, 941
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 6 cut(s) 48, 115, 233, 312, 409, 613
Lsp1109I GCAGC 2 cut(s) 484, 724
LweI GCATC 2 cut(s) 75, 366
MaeI CTAG 2 cut(s) 297, 945
MaeII ACGT 4 cut(s) 188, 551, 699, 761
MaeIII GTNAC 1 cut(s) 757
MalI GATC 6 cut(s) 245, 662, 686, 692, 864, 943
MbiI CCGCTC 1 cut(s) 624
MboI GATC 6 cut(s) 243, 660, 684, 690, 862, 941
MboII GAAGA 7 cut(s) 133, 478, 631, 670, 857, 970, 1006
MflI RGATCY 3 cut(s) 660, 862, 941
MhlI GDGCHC 2 cut(s) 120, 699
MluCI AATT 4 cut(s) 17, 471, 895, 934
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 440, 795
MreI CGCCGGCG 1 cut(s) 101
MroI TCCGGA 1 cut(s) 89
MroNI GCCGGC 2 cut(s) 101, 439
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 260
MspR9I CCNGG 9 cut(s) 23, 47, 151, 445, 463, 505, 529, 671, 768
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 8 cut(s) 72, 234, 385, 434, 506, 647, 743, 752
NaeI GCCGGC 2 cut(s) 103, 441
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 8 cut(s) 23, 47, 151, 445, 463, 505, 529, 768
NdeII GATC 6 cut(s) 243, 660, 684, 690, 862, 941
NgoMIV GCCGGC 2 cut(s) 101, 439
NlaIII CATG 3 cut(s) 259, 265, 307
NlaIV GGNNCC 7 cut(s) 194, 223, 229, 411, 438, 558, 606
NmeAIII GCCGAG 2 cut(s) 213, 295
NmuCI GTSAC 1 cut(s) 757
NspV TTCGAA 1 cut(s) 144
PagI TCATGA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 356, 548
PdiI GCCGGC 2 cut(s) 103, 441
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 93, 146, 568
PflFI GACNNNGTC 1 cut(s) 395
PfoI TCCNGGA 3 cut(s) 21, 461, 527
PkrI GCNGC 4 cut(s) 499, 739, 742, 745
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 440
PmaCI CACGTG 2 cut(s) 189, 700
PmlI CACGTG 2 cut(s) 189, 700
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 189, 700
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 669
PspCI CACGTG 2 cut(s) 189, 700
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 7 cut(s) 194, 223, 229, 411, 438, 558, 606
PspPI GGNCC 4 cut(s) 28, 48, 73, 152
PsuI RGATCY 3 cut(s) 660, 862, 941
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 4 cut(s) 498, 738, 741, 744
Sau3AI GATC 6 cut(s) 243, 660, 684, 690, 862, 941
Sau96I GGNCC 4 cut(s) 28, 48, 73, 152
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 9 cut(s) 23, 47, 151, 445, 463, 505, 529, 671, 768
SduI GDGCHC 2 cut(s) 120, 699
SfaNI GCATC 2 cut(s) 75, 366
SfoI GGCGCC 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 4 cut(s) 17, 471, 895, 934
SsiI CCGC 8 cut(s) 589, 611, 624, 641, 740, 743, 755, 785
SspDI GGCGCC 1 cut(s) 436
SspMI CTAG 2 cut(s) 297, 945
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 9 cut(s) 21, 45, 149, 443, 461, 503, 527, 669, 766
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 4 cut(s) 478, 707, 802, 911
TaiI ACGT 4 cut(s) 191, 554, 702, 764
TaqI TCGA 2 cut(s) 144, 693
TasI AATT 4 cut(s) 17, 471, 895, 934
TauI GCSGC 2 cut(s) 743, 746
TfiI GAWTC 3 cut(s) 93, 146, 568
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 45, 805, 1008
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 2 cut(s) 497, 737
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 3 cut(s) 17, 292, 692
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 3 cut(s) 45, 805, 1008
Tth111I GACNNNGTC 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 297, 945
ZraI GACGTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.