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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57990 |
| fragaria_vesca | FvH4_6g22460 |
| malus_domestica | MD12G1059200.v1.1 MD14G1058800.v1.1 |
| prunus_persica | Prupe.7G076000_v2.0.a1 |
| pyrus_communis | pycom12g05180 pycom14g04760 |
| rosa_chinensis | RchiOBHm_Chr3g0479871 |
| rosa_laevigata | RLG00000023529 |
| rosa_multiflora | Rmu_co8502759.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00401940 |
| rosa_rugosa | Rorug03G0179100 |
| rosa_samantha | Rh3AG230000 Rh3BG262700 Rh3CG260000 Rh3DG256100 |
| rosa_wichuraiana | Rw0G015260 Rw0G019240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 533 |
| AccB1I | GGYRCC | 4 cut(s) | 55, 134, 583, 857 |
| AccII | CGCG | 1 cut(s) | 24 |
| AccIII | TCCGGA | 1 cut(s) | 149 |
| AciI | CCGC | 9 cut(s) | 22, 291, 410, 521, 568, 590, 758, 909, 925 |
| AclWI | GGATC | 4 cut(s) | 36, 628, 671, 843 |
| AcoI | YGGCCR | 2 cut(s) | 176, 480 |
| AcsI | RAATTY | 4 cut(s) | 17, 486, 877, 901 |
| AcvI | CACGTG | 1 cut(s) | 673 |
| AcyI | GRCGYC | 3 cut(s) | 399, 530, 858 |
| AfaI | GTAC | 1 cut(s) | 604 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 162, 332, 395, 556, 643, 953 |
| AflIII | ACRYGT | 1 cut(s) | 670 |
| AgeI | ACCGGT | 1 cut(s) | 224 |
| AgsI | TTSAA | 6 cut(s) | 86, 277, 322, 374, 876, 976 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 925 |
| AjnI | CCWGG | 1 cut(s) | 642 |
| AluBI | AGCT | 5 cut(s) | 8, 118, 306, 392, 787 |
| AluI | AGCT | 5 cut(s) | 8, 118, 306, 392, 787 |
| Alw21I | GWGCWC | 1 cut(s) | 120 |
| Alw26I | GTCTC | 2 cut(s) | 330, 407 |
| AlwI | GGATC | 4 cut(s) | 36, 628, 671, 843 |
| Aor13HI | TCCGGA | 1 cut(s) | 149 |
| AoxI | GGCC | 5 cut(s) | 48, 73, 176, 480, 944 |
| ApeKI | GCWGC | 2 cut(s) | 288, 710 |
| ApoI | RAATTY | 4 cut(s) | 17, 486, 877, 901 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 173, 205 |
| AsiGI | ACCGGT | 1 cut(s) | 224 |
| AspLEI | GCGC | 2 cut(s) | 269, 860 |
| AspS9I | GGNCC | 6 cut(s) | 48, 73, 152, 222, 227, 944 |
| AsuC2I | CCSGG | 3 cut(s) | 164, 551, 741 |
| AsuHPI | GGTGA | 4 cut(s) | 571, 658, 787, 968 |
| AsuII | TTCGAA | 2 cut(s) | 144, 689 |
| AvaII | GGWCC | 3 cut(s) | 152, 222, 227 |
| BaeGI | GKGCMC | 1 cut(s) | 60 |
| BanI | GGYRCC | 4 cut(s) | 55, 134, 583, 857 |
| BanII | GRGCYC | 1 cut(s) | 120 |
| BbrPI | CACGTG | 1 cut(s) | 673 |
| Bbv12I | GWGCWC | 1 cut(s) | 120 |
| BbvCI | CCTCAGC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 300, 722 |
| BccI | CCATC | 2 cut(s) | 167, 712 |
| BceAI | ACGGC | 2 cut(s) | 412, 931 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 124, 158 |
| BciT130I | CCWGG | 1 cut(s) | 644 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BcnI | CCSGG | 3 cut(s) | 164, 551, 741 |
| BcoDI | GTCTC | 2 cut(s) | 330, 407 |
| BfaI | CTAG | 1 cut(s) | 303 |
| BfoI | RGCGCY | 2 cut(s) | 270, 861 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 755 |
| BisI | GCNGC | 3 cut(s) | 289, 522, 711 |
| BlsI | GCNGC | 3 cut(s) | 290, 523, 712 |
| BmcAI | AGTACT | 1 cut(s) | 604 |
| Bme1390I | CCNGG | 4 cut(s) | 164, 551, 644, 741 |
| Bme18I | GGWCC | 3 cut(s) | 152, 222, 227 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 925 |
| BmgT120I | GGNCC | 6 cut(s) | 48, 73, 152, 222, 227, 944 |
| BmiI | GGNNCC | 8 cut(s) | 57, 136, 154, 223, 229, 548, 585, 859 |
| BmrFI | CCNGG | 4 cut(s) | 164, 551, 644, 741 |
| BmrI | ACTGGG | 2 cut(s) | 228, 615 |
| BmsI | GCATC | 1 cut(s) | 525 |
| BmuI | ACTGGG | 2 cut(s) | 228, 615 |
| BpmI | CTGGAG | 2 cut(s) | 232, 809 |
| Bpu10I | CCTNAGC | 1 cut(s) | 62 |
| Bpu14I | TTCGAA | 2 cut(s) | 144, 689 |
| BpuMI | CCSGG | 3 cut(s) | 164, 551, 741 |
| BsaAI | YACGTR | 1 cut(s) | 673 |
| BsaBI | GATNNNNATC | 1 cut(s) | 662 |
| BsaHI | GRCGYC | 3 cut(s) | 399, 530, 858 |
| BsaJI | CCNNGG | 5 cut(s) | 51, 130, 465, 550, 750 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 224 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 185, 215 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 162, 332, 395, 556, 643, 953 |
| Bse118I | RCCGGY | 7 cut(s) | 101, 174, 224, 494, 538, 586, 854 |
| Bse1I | ACTGG | 4 cut(s) | 223, 249, 610, 926 |
| Bse8I | GATNNNNATC | 1 cut(s) | 662 |
| BseAI | TCCGGA | 1 cut(s) | 149 |
| BseBI | CCWGG | 1 cut(s) | 644 |
| BseDI | CCNNGG | 5 cut(s) | 51, 130, 465, 550, 750 |
| BseGI | GGATG | 1 cut(s) | 159 |
| BseJI | GATNNNNATC | 1 cut(s) | 662 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 162, 332, 395, 556, 643, 953 |
| BseMII | CTCAG | 4 cut(s) | 76, 341, 809, 853 |
| BseNI | ACTGG | 4 cut(s) | 223, 249, 610, 926 |
| BseSI | GKGCMC | 1 cut(s) | 60 |
| BseX3I | CGGCCG | 1 cut(s) | 176 |
| BseXI | GCAGC | 2 cut(s) | 300, 722 |
| Bsh1236I | CGCG | 1 cut(s) | 24 |
| Bsh1285I | CGRYCG | 1 cut(s) | 179 |
| BshFI | GGCC | 5 cut(s) | 50, 75, 178, 482, 946 |
| BshNI | GGYRCC | 4 cut(s) | 55, 134, 583, 857 |
| BshTI | ACCGGT | 1 cut(s) | 224 |
| BsiEI | CGRYCG | 1 cut(s) | 179 |
| BsiHKAI | GWGCWC | 1 cut(s) | 120 |
| BslFI | GGGAC | 2 cut(s) | 213, 235 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 162, 332, 395, 556, 643, 953 |
| BsmAI | GTCTC | 2 cut(s) | 330, 407 |
| BsmFI | GGGAC | 2 cut(s) | 213, 235 |
| BsnI | GGCC | 5 cut(s) | 50, 75, 178, 482, 946 |
| Bsp119I | TTCGAA | 2 cut(s) | 144, 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 60, 120 |
| Bsp13I | TCCGGA | 1 cut(s) | 149 |
| Bsp143I | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| BspACI | CCGC | 9 cut(s) | 22, 291, 410, 521, 568, 590, 758, 909, 925 |
| BspANI | GGCC | 5 cut(s) | 50, 75, 178, 482, 946 |
| BspCNI | CTCAG | 4 cut(s) | 75, 340, 810, 852 |
| BspEI | TCCGGA | 1 cut(s) | 149 |
| BspFNI | CGCG | 1 cut(s) | 24 |
| BspHI | TCATGA | 1 cut(s) | 261 |
| BspLI | GGNNCC | 8 cut(s) | 57, 136, 154, 223, 229, 548, 585, 859 |
| BspPI | GGATC | 4 cut(s) | 36, 628, 671, 843 |
| BspT104I | TTCGAA | 2 cut(s) | 144, 689 |
| BspT107I | GGYRCC | 4 cut(s) | 55, 134, 583, 857 |
| BsrFI | RCCGGY | 7 cut(s) | 101, 174, 224, 494, 538, 586, 854 |
| BsrI | ACTGG | 4 cut(s) | 223, 249, 610, 926 |
| BssAI | RCCGGY | 7 cut(s) | 101, 174, 224, 494, 538, 586, 854 |
| BssECI | CCNNGG | 5 cut(s) | 51, 130, 465, 550, 750 |
| BssMI | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| BssNI | GRCGYC | 3 cut(s) | 399, 530, 858 |
| BssT1I | CCWWGG | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 644 |
| Bst4CI | ACNGT | 2 cut(s) | 457, 775 |
| Bst6I | CTCTTC | 1 cut(s) | 593 |
| BstACI | GRCGYC | 3 cut(s) | 399, 530, 858 |
| BstBAI | YACGTR | 1 cut(s) | 673 |
| BstBI | TTCGAA | 2 cut(s) | 144, 689 |
| BstC8I | GCNNGC | 6 cut(s) | 77, 103, 239, 588, 766, 856 |
| BstDEI | CTNAG | 5 cut(s) | 62, 111, 327, 818, 839 |
| BstEII | GGTNACC | 1 cut(s) | 170 |
| BstF5I | GGATG | 1 cut(s) | 159 |
| BstFNI | CGCG | 1 cut(s) | 24 |
| BstH2I | RGCGCY | 2 cut(s) | 270, 861 |
| BstHHI | GCGC | 2 cut(s) | 269, 860 |
| BstKTI | GATC | 7 cut(s) | 31, 246, 348, 636, 660, 666, 838 |
| BstMAI | GTCTC | 2 cut(s) | 330, 407 |
| BstMBI | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| BstMCI | CGRYCG | 1 cut(s) | 179 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 72, 755 |
| BstNI | CCWGG | 1 cut(s) | 644 |
| BstPI | GGTNACC | 1 cut(s) | 170 |
| BstSCI | CCNGG | 4 cut(s) | 162, 549, 642, 739 |
| BstSLI | GKGCMC | 1 cut(s) | 60 |
| BstUI | CGCG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 2 cut(s) | 300, 722 |
| BstX2I | RGATCY | 2 cut(s) | 633, 835 |
| BstYI | RGATCY | 2 cut(s) | 633, 835 |
| BstZI | CGGCCG | 1 cut(s) | 176 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 5 cut(s) | 50, 75, 178, 482, 946 |
| BtsCI | GGATG | 1 cut(s) | 159 |
| BtsI | GCAGTG | 1 cut(s) | 429 |
| BtsIMutI | CAGTG | 2 cut(s) | 429, 991 |
| Cac8I | GCNNGC | 6 cut(s) | 77, 103, 239, 588, 766, 856 |
| CciI | TCATGA | 1 cut(s) | 261 |
| CfoI | GCGC | 2 cut(s) | 269, 860 |
| Cfr10I | RCCGGY | 7 cut(s) | 101, 174, 224, 494, 538, 586, 854 |
| Cfr13I | GGNCC | 6 cut(s) | 48, 73, 152, 222, 227, 944 |
| CseI | GACGC | 2 cut(s) | 388, 770 |
| Csp6I | GTAC | 1 cut(s) | 603 |
| CspAI | ACCGGT | 1 cut(s) | 224 |
| CviAII | CATG | 3 cut(s) | 256, 262, 310 |
| CviQI | GTAC | 1 cut(s) | 603 |
| DdeI | CTNAG | 5 cut(s) | 62, 111, 327, 818, 839 |
| DinI | GGCGCC | 1 cut(s) | 859 |
| DpnI | GATC | 7 cut(s) | 30, 245, 347, 635, 659, 665, 837 |
| DpnII | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| DriI | GACNNNNNGTC | 1 cut(s) | 925 |
| EaeI | YGGCCR | 2 cut(s) | 176, 480 |
| EagI | CGGCCG | 1 cut(s) | 176 |
| Eam1104I | CTCTTC | 1 cut(s) | 593 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 925 |
| EarI | CTCTTC | 1 cut(s) | 593 |
| EciI | GGCGGA | 3 cut(s) | 425, 605, 773 |
| Ecl136II | GAGCTC | 1 cut(s) | 118 |
| EclXI | CGGCCG | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 1 cut(s) | 51 |
| Eco24I | GRGCYC | 1 cut(s) | 120 |
| Eco47I | GGWCC | 3 cut(s) | 152, 222, 227 |
| Eco52I | CGGCCG | 1 cut(s) | 176 |
| Eco53kI | GAGCTC | 1 cut(s) | 118 |
| Eco72I | CACGTG | 1 cut(s) | 673 |
| Eco91I | GGTNACC | 1 cut(s) | 170 |
| EcoICRI | GAGCTC | 1 cut(s) | 118 |
| EcoO65I | GGTNACC | 1 cut(s) | 170 |
| EcoRI | GAATTC | 2 cut(s) | 486, 901 |
| EcoRII | CCWGG | 1 cut(s) | 642 |
| EcoT14I | CCWWGG | 1 cut(s) | 51 |
| EcoT38I | GRGCYC | 1 cut(s) | 120 |
| EgeI | GGCGCC | 1 cut(s) | 859 |
| EheI | GGCGCC | 1 cut(s) | 859 |
| ErhI | CCWWGG | 1 cut(s) | 51 |
| FaeI | CATG | 3 cut(s) | 259, 265, 313 |
| FaiI | YATR | 5 cut(s) | 68, 257, 263, 311, 440 |
| FaqI | GGGAC | 2 cut(s) | 213, 235 |
| FatI | CATG | 3 cut(s) | 255, 261, 309 |
| FauI | CCCGC | 2 cut(s) | 284, 902 |
| Fnu4HI | GCNGC | 3 cut(s) | 289, 522, 711 |
| FokI | GGATG | 1 cut(s) | 146 |
| FriOI | GRGCYC | 1 cut(s) | 120 |
| Fsp4HI | GCNGC | 3 cut(s) | 289, 522, 711 |
| FspBI | CTAG | 1 cut(s) | 303 |
| GlaI | GCGC | 2 cut(s) | 268, 859 |
| GluI | GCNGC | 3 cut(s) | 289, 522, 711 |
| GsuI | CTGGAG | 2 cut(s) | 232, 809 |
| HaeII | RGCGCY | 2 cut(s) | 270, 861 |
| HaeIII | GGCC | 5 cut(s) | 50, 75, 178, 482, 946 |
| HgaI | GACGC | 2 cut(s) | 388, 770 |
| HhaI | GCGC | 2 cut(s) | 269, 860 |
| Hin1I | GRCGYC | 3 cut(s) | 399, 530, 858 |
| Hin1II | CATG | 3 cut(s) | 259, 265, 313 |
| Hin6I | GCGC | 2 cut(s) | 267, 858 |
| HinP1I | GCGC | 2 cut(s) | 267, 858 |
| HincII | GTYRAC | 1 cut(s) | 919 |
| HindII | GTYRAC | 1 cut(s) | 919 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 5 cut(s) | 93, 107, 146, 185, 686 |
| HphI | GGTGA | 4 cut(s) | 571, 658, 787, 968 |
| Hpy166II | GTNNAC | 3 cut(s) | 562, 676, 919 |
| Hpy188I | TCNGA | 5 cut(s) | 33, 335, 469, 618, 952 |
| Hpy188III | TCNNGA | 7 cut(s) | 90, 150, 214, 262, 343, 349, 661 |
| Hpy8I | GTNNAC | 3 cut(s) | 562, 676, 919 |
| Hpy99I | CGWCG | 4 cut(s) | 212, 404, 535, 952 |
| HpyAV | CCTTC | 5 cut(s) | 148, 241, 685, 700, 973 |
| HpyCH4III | ACNGT | 2 cut(s) | 457, 775 |
| HpyCH4IV | ACGT | 3 cut(s) | 530, 672, 678 |
| HpyCH4V | TGCA | 1 cut(s) | 683 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 72, 755 |
| HpyF3I | CTNAG | 5 cut(s) | 62, 111, 327, 818, 839 |
| HpySE526I | ACGT | 3 cut(s) | 530, 672, 678 |
| Hsp92I | GRCGYC | 3 cut(s) | 399, 530, 858 |
| Hsp92II | CATG | 3 cut(s) | 259, 265, 313 |
| HspAI | GCGC | 2 cut(s) | 267, 858 |
| KasI | GGCGCC | 1 cut(s) | 857 |
| Kpn2I | TCCGGA | 1 cut(s) | 149 |
| KroI | GCCGGC | 3 cut(s) | 101, 586, 854 |
| KroNI | GCCGGC | 3 cut(s) | 103, 588, 856 |
| Kzo9I | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| LmnI | GCTCC | 2 cut(s) | 115, 318 |
| Lsp1109I | GCAGC | 2 cut(s) | 300, 722 |
| LweI | GCATC | 1 cut(s) | 525 |
| MaeI | CTAG | 1 cut(s) | 303 |
| MaeII | ACGT | 3 cut(s) | 530, 672, 678 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MalI | GATC | 7 cut(s) | 30, 245, 347, 635, 659, 665, 837 |
| MboI | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| MboII | GAAGA | 4 cut(s) | 133, 457, 610, 988 |
| MflI | RGATCY | 2 cut(s) | 633, 835 |
| MhlI | GDGCHC | 2 cut(s) | 60, 120 |
| MluCI | AATT | 5 cut(s) | 17, 486, 877, 901, 971 |
| Mly113I | GGCGCC | 1 cut(s) | 858 |
| MlyI | GAGTC | 2 cut(s) | 116, 179 |
| MmeI | TCCRAC | 2 cut(s) | 216, 930 |
| MreI | CGCCGGCG | 1 cut(s) | 854 |
| MroI | TCCGGA | 1 cut(s) | 149 |
| MroNI | GCCGGC | 3 cut(s) | 101, 586, 854 |
| MslI | CAYNNNNRTG | 1 cut(s) | 260 |
| MspA1I | CMGCKG | 3 cut(s) | 291, 392, 787 |
| MspR9I | CCNGG | 4 cut(s) | 164, 551, 644, 741 |
| MvaI | CCWGG | 1 cut(s) | 644 |
| MvnI | CGCG | 1 cut(s) | 24 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 72, 755 |
| NaeI | GCCGGC | 3 cut(s) | 103, 588, 856 |
| NarI | GGCGCC | 1 cut(s) | 858 |
| NciI | CCSGG | 3 cut(s) | 164, 551, 741 |
| NdeII | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| NgoMIV | GCCGGC | 3 cut(s) | 101, 586, 854 |
| NlaIII | CATG | 3 cut(s) | 259, 265, 313 |
| NlaIV | GGNNCC | 8 cut(s) | 57, 136, 154, 223, 229, 548, 585, 859 |
| NmeAIII | GCCGAG | 4 cut(s) | 111, 264, 295, 775 |
| NspV | TTCGAA | 2 cut(s) | 144, 689 |
| PagI | TCATGA | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 102 |
| PdiI | GCCGGC | 3 cut(s) | 103, 588, 856 |
| PfeI | GAWTC | 3 cut(s) | 93, 146, 686 |
| PflFI | GACNNNGTC | 1 cut(s) | 398 |
| PfoI | TCCNGGA | 1 cut(s) | 739 |
| PinAI | ACCGGT | 1 cut(s) | 224 |
| PkrI | GCNGC | 3 cut(s) | 290, 523, 712 |
| PleI | GAGTC | 2 cut(s) | 115, 179 |
| PluTI | GGCGCC | 1 cut(s) | 861 |
| PmaCI | CACGTG | 1 cut(s) | 673 |
| PmlI | CACGTG | 1 cut(s) | 673 |
| PpsI | GAGTC | 2 cut(s) | 115, 179 |
| Ppu21I | YACGTR | 1 cut(s) | 673 |
| Psp124BI | GAGCTC | 1 cut(s) | 120 |
| Psp6I | CCWGG | 1 cut(s) | 642 |
| PspCI | CACGTG | 1 cut(s) | 673 |
| PspEI | GGTNACC | 1 cut(s) | 170 |
| PspGI | CCWGG | 1 cut(s) | 642 |
| PspN4I | GGNNCC | 8 cut(s) | 57, 136, 154, 223, 229, 548, 585, 859 |
| PspPI | GGNCC | 6 cut(s) | 48, 73, 152, 222, 227, 944 |
| PsuI | RGATCY | 2 cut(s) | 633, 835 |
| PsyI | GACNNNGTC | 1 cut(s) | 398 |
| PvuII | CAGCTG | 2 cut(s) | 392, 787 |
| RsaI | GTAC | 1 cut(s) | 604 |
| RsaNI | GTAC | 1 cut(s) | 603 |
| RseI | CAYNNNNRTG | 1 cut(s) | 260 |
| SacI | GAGCTC | 1 cut(s) | 120 |
| SatI | GCNGC | 3 cut(s) | 289, 522, 711 |
| Sau3AI | GATC | 7 cut(s) | 28, 243, 345, 633, 657, 663, 835 |
| Sau96I | GGNCC | 6 cut(s) | 48, 73, 152, 222, 227, 944 |
| ScaI | AGTACT | 1 cut(s) | 604 |
| SchI | GAGTC | 2 cut(s) | 116, 179 |
| ScrFI | CCNGG | 4 cut(s) | 164, 551, 644, 741 |
| SduI | GDGCHC | 2 cut(s) | 60, 120 |
| SfaNI | GCATC | 1 cut(s) | 525 |
| SfoI | GGCGCC | 1 cut(s) | 859 |
| SfuI | TTCGAA | 2 cut(s) | 144, 689 |
| SgrAI | CRCCGGYG | 2 cut(s) | 494, 854 |
| SinI | GGWCC | 3 cut(s) | 152, 222, 227 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 260 |
| Sse9I | AATT | 5 cut(s) | 17, 486, 877, 901, 971 |
| SsiI | CCGC | 9 cut(s) | 22, 291, 410, 521, 568, 590, 758, 909, 925 |
| SspDI | GGCGCC | 1 cut(s) | 857 |
| SspI | AATATT | 1 cut(s) | 889 |
| SspMI | CTAG | 1 cut(s) | 303 |
| SstI | GAGCTC | 1 cut(s) | 120 |
| StyD4I | CCNGG | 4 cut(s) | 162, 549, 642, 739 |
| StyI | CCWWGG | 1 cut(s) | 51 |
| TaaI | ACNGT | 2 cut(s) | 457, 775 |
| TaiI | ACGT | 3 cut(s) | 533, 675, 681 |
| TaqI | TCGA | 6 cut(s) | 144, 344, 533, 666, 689, 869 |
| TasI | AATT | 5 cut(s) | 17, 486, 877, 901, 971 |
| TatI | WGTACW | 1 cut(s) | 602 |
| TauI | GCSGC | 1 cut(s) | 524 |
| TfiI | GAWTC | 3 cut(s) | 93, 146, 686 |
| TscAI | CASTG | 1 cut(s) | 429 |
| TseI | GCWGC | 2 cut(s) | 288, 710 |
| TspDTI | ATGAA | 4 cut(s) | 17, 298, 611, 665 |
| TspRI | CASTG | 1 cut(s) | 429 |
| Tth111I | GACNNNGTC | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 3 cut(s) | 152, 222, 227 |
| XapI | RAATTY | 4 cut(s) | 17, 486, 877, 901 |
| XspI | CTAG | 1 cut(s) | 303 |
| ZraI | GACGTC | 1 cut(s) | 531 |
| ZrmI | AGTACT | 1 cut(s) | 604 |