Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

21632812 .. 21635178

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAGAAGATTCTAGAAAGATCAATGGAAGGTTCAGGGACATGGCAAGGCTTGGTGCTCGTTGGTATTGTCACATGGATCTGTGCTTCTTCTTATCTTAAATTTACCCATAAATTTAGATCTCTCTTACAACCATGGGTCGCTCGTCAAGTCGTTGGTGGTGTCCCTCTCATTCTCAGAATCCAGAAATGTCAGAATGGAGTGTTGGATGCTTTCTTCTCAGGGCTATCTTGTGTTGTCTCTGTTCCCTTTTACACTGCTTTCTTGCCTTTGCTCTTCTGGAGTGGACATGGTAGATTGGCTAGGCAGATGACTCTCTTGATTGCATTCTGTGATTACTTGGGAAACTGCATTAAGGATGTGGTATCAGCTCCTAGGCCAAGCTGTCCACCGGTTAGAAGGATTACTGCCACTAAAGATGAGGAAGACAATGCAATGGAATATGGCTTGCCTTCTTCACATACTCTTAACACTGTTTGTTTATCTGGCTATCTACTCCATTATGTGTTATCCTCCTTGGAATACGAAAGTGTGTCTATCCAGTACTATGGATTTGCCCTTGCTTGTTTGTTGGTAGCTCTAATCGCCTTCGGAAGGGTTTACTTGGGTATGCATAGTGTCGTCGATATCGTCAGTGGTCTTGCCATAGGAGTCCTGATTCTAGGTCTTTGGCTTACCGTCAATGAAAAACTTGACGATTTCATTACATCAAAACAGAACGTTAGCTCTTTCTGGACCGCGTTGAGTTTCTTATTGCTCTTTGCTTATCCGACCCCTGAGCACCCAACTCCTAGCTACGAGTACCACACAGCCTTCAACGGGGTTACCTTAGGAATTGTTACCGGAGTGCAGCAAACGTACAGCCAATTCCACCACGAAGCTGCTCCACGAATCTTCTCACCAGAGCTCCCTATTTCATCCTACCTTGGTAGAGTCATGGTGGGAATACCGACGATACTCTTAGTGAAGTTCTGCAGTAAATCTCTTGCAAAATGGACTTTACCAATGGTATCCAACGCACTTGGGATTCCAATAAGATCCAGCATGTACATTCCCAAGCTCAAGGGGTATGCAAGTGGGAAGAAGACAGACGAACCCAAGAATTCAGTTGGATATTTGCAGAAACTATGCGAGTTTTTGAGCCACGACTCGTTTGATATTGATACTGGTATAAGGTTCTTCCAATATGCAGGCCTTGCCTGGTCCGTTGTTGATCTTGTTCCTTCACTATTCTCTTACGTTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

416

Amino Acids

46.17

Weight (kDa)

8.57

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	104 - 229	7.5e-20	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	740
AciI	CCGC	1 cut(s)	738
AclI	AACGTT	1 cut(s)	720
AclWI	GGATC	2 cut(s)	86, 1032
AcsI	RAATTY	3 cut(s)	101, 113, 1102
AfaI	GTAC	4 cut(s)	545, 803, 860, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	594, 819
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	1199
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	8 cut(s)	371, 384, 578, 726, 795, 881, 907, 1060
AluI	AGCT	8 cut(s)	371, 384, 578, 726, 795, 881, 907, 1060
Alw21I	GWGCWC	3 cut(s)	60, 783, 909
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	86, 1032
AoxI	GGCC	2 cut(s)	377, 1192
ApeKI	GCWGC	2 cut(s)	850, 881
ApoI	RAATTY	3 cut(s)	101, 113, 1102
AsiGI	ACCGGT	1 cut(s)	391
AspA2I	CCTAGG	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	735, 1203
AsuHPI	GGTGA	1 cut(s)	891
AvaII	GGWCC	2 cut(s)	735, 1203
AvrII	CCTAGG	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	909
BbsI	GAAGAC	2 cut(s)	432, 1091
Bbv12I	GWGCWC	3 cut(s)	60, 783, 909
BbvI	GCAGC	2 cut(s)	862, 868
BciT130I	CCWGG	1 cut(s)	1201
BciVI	GTATCC	1 cut(s)	1021
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	5 cut(s)	14, 303, 375, 662, 792
BfmI	CTRYAG	1 cut(s)	973
BfuI	GTATCC	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	2 cut(s)	851, 882
BlnI	CCTAGG	1 cut(s)	374
BlsI	GCNGC	2 cut(s)	852, 883
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	1201
Bme18I	GGWCC	2 cut(s)	735, 1203
BmgT120I	GGNCC	2 cut(s)	735, 1203
BmrFI	CCNGG	1 cut(s)	1201
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	432, 1091
BpmI	CTGGAG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	1046
BsaJI	CCNNGG	4 cut(s)	134, 374, 516, 925
BsaWI	WCCGGW	2 cut(s)	391, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 819
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	541, 1171
Bse21I	CCTNAGG	1 cut(s)	829
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	1201
BseDI	CCNNGG	4 cut(s)	134, 374, 516, 925
BseGI	GGATG	3 cut(s)	214, 364, 917
BseLI	CCNNNNNNNGG	2 cut(s)	594, 819
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	190, 234, 768
BseNI	ACTGG	2 cut(s)	541, 1171
BseXI	GCAGC	2 cut(s)	862, 868
BsgI	GTGCAG	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	2 cut(s)	379, 1194
BshTI	ACCGGT	1 cut(s)	391
BsiHKAI	GWGCWC	3 cut(s)	60, 783, 909
BsiSI	CCGG	2 cut(s)	392, 843
BslFI	GGGAC	2 cut(s)	52, 149
BslI	CCNNNNNNNGG	2 cut(s)	594, 819
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	52, 149
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	379, 1194
Bsp1286I	GDGCHC	3 cut(s)	60, 783, 909
Bsp1407I	TGTACA	1 cut(s)	1047
Bsp143I	GATC	5 cut(s)	20, 78, 119, 1037, 1213
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	1 cut(s)	738
BspANI	GGCC	2 cut(s)	379, 1194
BspCNI	CTCAG	3 cut(s)	189, 233, 769
BspFNI	CGCG	1 cut(s)	740
BspMAI	CTGCAG	1 cut(s)	977
BspPI	GGATC	2 cut(s)	86, 1032
BspQI	GCTCTTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	391
BsrGI	TGTACA	1 cut(s)	1047
BsrI	ACTGG	2 cut(s)	541, 1171
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	4 cut(s)	134, 374, 516, 925
BssMI	GATC	5 cut(s)	20, 78, 119, 1037, 1213
BssT1I	CCWWGG	4 cut(s)	134, 374, 516, 925
Bst2UI	CCWGG	1 cut(s)	1201
Bst4CI	ACNGT	2 cut(s)	475, 679
Bst6I	CTCTTC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	1196
BstAUI	TGTACA	1 cut(s)	1047
BstC8I	GCNNGC	2 cut(s)	449, 1192
BstDEI	CTNAG	5 cut(s)	176, 220, 777, 829, 961
BstDSI	CCRYGG	1 cut(s)	134
BstEII	GGTNACC	1 cut(s)	823
BstENI	CCTNNNNNAGG	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	214, 364, 917
BstFNI	CGCG	1 cut(s)	740
BstKTI	GATC	5 cut(s)	23, 81, 122, 1040, 1216
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	5 cut(s)	20, 78, 119, 1037, 1213
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 1196
BstNI	CCWGG	1 cut(s)	1201
BstNSI	RCATGY	1 cut(s)	1048
BstPI	GGTNACC	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	1199
BstSFI	CTRYAG	1 cut(s)	973
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	862, 868
BstV2I	GAAGAC	2 cut(s)	432, 1091
BstX2I	RGATCY	3 cut(s)	78, 119, 1037
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	3 cut(s)	78, 119, 1037
Bsu36I	CCTNAGG	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	1021
BsuRI	GGCC	2 cut(s)	379, 1194
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	214, 364, 917
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	255, 471, 640
Cac8I	GCNNGC	2 cut(s)	449, 1192
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	735, 1203
Csp6I	GTAC	4 cut(s)	544, 802, 859, 1048
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	6 cut(s)	42, 75, 135, 290, 937, 1045
CviQI	GTAC	4 cut(s)	544, 802, 859, 1048
DdeI	CTNAG	5 cut(s)	176, 220, 777, 829, 961
DpnI	GATC	5 cut(s)	22, 80, 121, 1039, 1215
DpnII	GATC	5 cut(s)	20, 78, 119, 1037, 1213
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	907
Eco130I	CCWWGG	4 cut(s)	134, 374, 516, 925
Eco147I	AGGCCT	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	909
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	735, 1203
Eco53kI	GAGCTC	1 cut(s)	907
Eco81I	CCTNAGG	1 cut(s)	829
Eco91I	GGTNACC	1 cut(s)	823
EcoICRI	GAGCTC	1 cut(s)	907
EcoNI	CCTNNNNNAGG	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	1199
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	4 cut(s)	134, 374, 516, 925
EcoT22I	ATGCAT	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	909
ErhI	CCWWGG	4 cut(s)	134, 374, 516, 925
FaeI	CATG	6 cut(s)	45, 78, 138, 293, 940, 1048
FaqI	GGGAC	2 cut(s)	52, 149
FatI	CATG	6 cut(s)	41, 74, 134, 289, 936, 1044
Fnu4HI	GCNGC	2 cut(s)	851, 882
FokI	GGATG	3 cut(s)	221, 371, 904
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	2 cut(s)	851, 882
FspBI	CTAG	5 cut(s)	14, 303, 375, 662, 792
GluI	GCNGC	2 cut(s)	851, 882
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	379, 1194
HapII	CCGG	2 cut(s)	392, 843
Hin1II	CATG	6 cut(s)	45, 78, 138, 293, 940, 1048
HincII	GTYRAC	1 cut(s)	1243
HindII	GTYRAC	1 cut(s)	1243
HinfI	GANTC	9 cut(s)	10, 180, 313, 651, 658, 891, 933, 1027, 1148
HpaI	GTTAAC	1 cut(s)	1243
HpaII	CCGG	2 cut(s)	392, 843
HphI	GGTGA	1 cut(s)	891
Hpy166II	GTNNAC	4 cut(s)	287, 389, 601, 1243
Hpy188I	TCNGA	4 cut(s)	179, 195, 593, 771
Hpy188III	TCNNGA	6 cut(s)	14, 184, 280, 319, 655, 733
Hpy8I	GTNNAC	4 cut(s)	287, 389, 601, 1243
Hpy99I	CGWCG	2 cut(s)	626, 955
HpyAV	CCTTC	7 cut(s)	23, 393, 462, 588, 598, 823, 1233
HpyCH4III	ACNGT	2 cut(s)	475, 679
HpyCH4IV	ACGT	3 cut(s)	720, 857, 1239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 1196
HpyF3I	CTNAG	5 cut(s)	176, 220, 777, 829, 961
HpySE526I	ACGT	3 cut(s)	720, 857, 1239
Hsp92II	CATG	6 cut(s)	45, 78, 138, 293, 940, 1048
KspAI	GTTAAC	1 cut(s)	1243
Kzo9I	GATC	5 cut(s)	20, 78, 119, 1037, 1213
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	3 cut(s)	376, 889, 912
Lsp1109I	GCAGC	2 cut(s)	862, 868
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	5 cut(s)	14, 303, 375, 662, 792
MaeII	ACGT	3 cut(s)	720, 857, 1239
MaeIII	GTNAC	3 cut(s)	70, 823, 838
MalI	GATC	5 cut(s)	22, 80, 121, 1039, 1215
MboI	GATC	5 cut(s)	20, 78, 119, 1037, 1213
MflI	RGATCY	3 cut(s)	78, 119, 1037
MhlI	GDGCHC	3 cut(s)	60, 783, 909
MluCI	AATT	5 cut(s)	101, 113, 834, 866, 1102
MlyI	GAGTC	4 cut(s)	307, 660, 942, 1142
MmeI	TCCRAC	4 cut(s)	186, 794, 1038, 1090
MnlI	CCTC	3 cut(s)	177, 415, 523
Mph1103I	ATGCAT	1 cut(s)	615
MseI	TTAA	4 cut(s)	99, 354, 468, 1242
MspI	CCGG	2 cut(s)	392, 843
MspR9I	CCNGG	1 cut(s)	1201
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	1201
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	2 cut(s)	584, 1196
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	5 cut(s)	20, 78, 119, 1037, 1213
NlaIII	CATG	6 cut(s)	45, 78, 138, 293, 940, 1048
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	1048
PceI	AGGCCT	1 cut(s)	1194
PciSI	GCTCTTC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	5 cut(s)	10, 180, 658, 891, 1027
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	852, 883
PleI	GAGTC	4 cut(s)	307, 659, 941, 1142
PpsI	GAGTC	4 cut(s)	307, 659, 941, 1142
Psp124BI	GAGCTC	1 cut(s)	909
Psp1406I	AACGTT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	1199
PspEI	GGTNACC	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	1199
PspPI	GGNCC	2 cut(s)	735, 1203
PstI	CTGCAG	1 cut(s)	977
PsuI	RGATCY	3 cut(s)	78, 119, 1037
RsaI	GTAC	4 cut(s)	545, 803, 860, 1049
RsaNI	GTAC	4 cut(s)	544, 802, 859, 1048
SacI	GAGCTC	1 cut(s)	909
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	99, 354, 468, 1242
SatI	GCNGC	2 cut(s)	851, 882
Sau3AI	GATC	5 cut(s)	20, 78, 119, 1037, 1213
Sau96I	GGNCC	2 cut(s)	735, 1203
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	4 cut(s)	307, 660, 942, 1142
ScrFI	CCNGG	1 cut(s)	1201
SduI	GDGCHC	3 cut(s)	60, 783, 909
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	973
SinI	GGWCC	2 cut(s)	735, 1203
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	5 cut(s)	101, 113, 834, 866, 1102
SseBI	AGGCCT	1 cut(s)	1194
SsiI	CCGC	1 cut(s)	738
SspMI	CTAG	5 cut(s)	14, 303, 375, 662, 792
SstI	GAGCTC	1 cut(s)	909
StuI	AGGCCT	1 cut(s)	1194
StyD4I	CCNGG	1 cut(s)	1199
StyI	CCWWGG	4 cut(s)	134, 374, 516, 925
TaaI	ACNGT	2 cut(s)	475, 679
TaiI	ACGT	3 cut(s)	723, 860, 1242
TaqI	TCGA	1 cut(s)	624
TasI	AATT	5 cut(s)	101, 113, 834, 866, 1102
TatI	WGTACW	2 cut(s)	543, 1047
TfiI	GAWTC	5 cut(s)	10, 180, 658, 891, 1027
Tru1I	TTAA	4 cut(s)	99, 354, 468, 1242
Tru9I	TTAA	4 cut(s)	99, 354, 468, 1242
TscAI	CASTG	3 cut(s)	262, 478, 640
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	850, 881
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	17, 691, 699, 906
TspGWI	ACGGA	1 cut(s)	1195
TspRI	CASTG	3 cut(s)	262, 478, 640
VpaK11BI	GGWCC	2 cut(s)	735, 1203
XagI	CCTNNNNNAGG	1 cut(s)	592
XapI	RAATTY	3 cut(s)	101, 113, 1102
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	1 cut(s)	1048
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	5 cut(s)	14, 303, 375, 662, 792
ZrmI	AGTACT	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.