Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

15126504 .. 15129986

Gene Structure 3483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGAGCACAGCAGTGTGGCAAGGTGCAACACTCTGTGGGATTCTGACATGGATTCTAATGGCTTCTTATCTCAATCTGACCCCAAAGCTTCGATCTCTGCTGCAGCCGTGGGTGGCCCACCACGTCATCACAGGCACGCCCCTCATCCTCCAGATCCAGAATTACCAGCATAGGTTCTTGGATGCTTTCTTCTCTGCCTTGTCATGTGTTGTTTCTGTGCCTTTCTACACTGCATTTCTTCCTTTGCTTTTCTGGAGTGGGCATGGCAAATTGGCAAGGCAAATGACCCTCTTGATGGCTTTCTGTGATTACTTGGGGAACTGTATAAAGGATGTGGTATCAGCTCCTAGACCGAGTTGCCCTCCGGTTAGGAGAATAACAGCGACAAGAGATGAGGAGGATAATGCATTGGAATATGGATTGCCATCTTCTCACACTCTAAACACAGTTTGCTTGTCTGGATACCTTTTGCATTACATCCTATCTTATGCTCAGAATGAAGATGCCTATTTGAAATTTGGTGGACTTGCTCTTGTTTGCTTGCTTGTGAGTCTCATTGGTTTGGGAAGAATTTATCTCGGCATGCACAGTCCAGTTGATATCATTGGTGGACTTGCTGTTGGTTTGCTGATCCTCTCCTTCTGGCTTACTGTTCACGAACATGTCGATAGTTTTGTAGTCTCAGGACAAAATGTTACAACCTTCTGGGCTGCGCTAAGCTTCATATTGCTCTTTGCTTATCCTAACCCTGAGTGTCCAACTCCAAGTTTCGAGTACCACACAGCATTCAATGGTGTCGCATTAGGCATTGTATCTGGGGTCCAGCAAACGTACCAGCAGTTTCACCATGAAGCCGTTCCACGGTTATTTATATCAGAATTAACAGTCCCTTGCTTTATGGGAAGAATGCTGGTTGGAATACCAACAATACTTATTGTGAAGTTCTGTAGCAAAGCTCTTGCTAAATGGATTCTTCCTGTGGTAGCCAACGCTTTGAGCATCCCAATAAAATCAAGCACATACATTCCTACGTTAAATGGATCAAGTAATGGGAAAAAATCAGACCGGTTGAAGCAGTCAGGTTATCTCCAGAAGCTATACCTTTTCTCCGGCCAAGACTCATTTGATGTTGATACTGGTATCAGATTCATTCAATATGCTGGCCTTGCATGGTCAGTGGTAGATCTTGTTCCTTCTGTTTTCTCCCTATTAAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

408

Amino Acids

44.96

Weight (kDa)

7.6

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	3 - 125	3.9e-20	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	151, 628, 1051
AcoI	YGGCCR	1 cut(s)	1114
AcsI	RAATTY	2 cut(s)	518, 573
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	779, 836
AfiI	CCNNNNNNNGG	2 cut(s)	298, 864
AflIII	ACRYGT	1 cut(s)	664
AgeI	ACCGGT	1 cut(s)	1068
AgsI	TTSAA	4 cut(s)	517, 793, 1075, 1157
AjiI	CACGTC	1 cut(s)	127
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	6 cut(s)	91, 347, 723, 959, 1099, 1218
AluI	AGCT	6 cut(s)	91, 347, 723, 959, 1099, 1218
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	560, 688
AlwI	GGATC	3 cut(s)	151, 628, 1051
AoxI	GGCC	3 cut(s)	117, 1114, 1165
ApeKI	GCWGC	3 cut(s)	103, 106, 713
ApoI	RAATTY	2 cut(s)	518, 573
AsiGI	ACCGGT	1 cut(s)	1068
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	2 cut(s)	118, 823
AsuHPI	GGTGA	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	90, 118, 700
BccI	CCATC	2 cut(s)	292, 436
BceAI	ACGGC	2 cut(s)	94, 842
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	560, 688
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	104, 949
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	1186
BisI	GCNGC	3 cut(s)	104, 107, 714
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	3 cut(s)	105, 108, 715
Bme18I	GGWCC	1 cut(s)	823
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	118, 823
BmiI	GGNNCC	1 cut(s)	824
BmsI	GCATC	3 cut(s)	175, 496, 1011
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	3 cut(s)	137, 277, 1076
Bpu1102I	GCTNAGC	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	110, 863
BsaWI	WCCGGW	2 cut(s)	367, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	1094, 1124
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 864
Bse118I	RCCGGY	1 cut(s)	1068
Bse1I	ACTGG	2 cut(s)	596, 1144
Bse8I	GATNNNNATC	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	110, 863
BseGI	GGATG	5 cut(s)	147, 190, 340, 480, 1002
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	2 cut(s)	298, 864
BseMII	CTCAG	3 cut(s)	509, 699, 744
BseNI	ACTGG	2 cut(s)	596, 1144
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	90, 118, 700
BshFI	GGCC	3 cut(s)	119, 1116, 1167
BshTI	ACCGGT	1 cut(s)	1068
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	368, 1069, 1113
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	298, 864
BsmAI	GTCTC	2 cut(s)	560, 688
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	2 cut(s)	788, 915
BsnI	GGCC	3 cut(s)	119, 1116, 1167
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	5 cut(s)	95, 156, 633, 1043, 1186
Bsp1720I	GCTNAGC	1 cut(s)	719
BspANI	GGCC	3 cut(s)	119, 1116, 1167
BspCNI	CTCAG	3 cut(s)	508, 698, 745
BspLI	GGNNCC	1 cut(s)	824
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	3 cut(s)	151, 628, 1051
BsrFI	RCCGGY	1 cut(s)	1068
BsrI	ACTGG	2 cut(s)	596, 1144
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	2 cut(s)	110, 863
BssMI	GATC	5 cut(s)	95, 156, 633, 1043, 1186
Bst4CI	ACNGT	6 cut(s)	326, 451, 593, 655, 867, 889
BstC8I	GCNNGC	4 cut(s)	140, 545, 587, 1165
BstDEI	CTNAG	4 cut(s)	495, 685, 719, 753
BstDSI	CCRYGG	2 cut(s)	110, 863
BstF5I	GGATG	5 cut(s)	147, 190, 340, 480, 1002
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	5 cut(s)	98, 159, 636, 1046, 1189
BstMAI	GTCTC	2 cut(s)	560, 688
BstMBI	GATC	5 cut(s)	95, 156, 633, 1043, 1186
BstMWI	GCNNNNNNNGC	1 cut(s)	1169
BstNSI	RCATGY	2 cut(s)	589, 668
BstSFI	CTRYAG	2 cut(s)	104, 949
BstV1I	GCAGC	3 cut(s)	90, 118, 700
BstX2I	RGATCY	2 cut(s)	156, 1186
BstYI	RGATCY	2 cut(s)	156, 1186
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	119, 1116, 1167
BtgI	CCRYGG	2 cut(s)	110, 863
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	147, 190, 340, 480, 1002
BtsI	GCAGTG	2 cut(s)	21, 231
BtsIMutI	CAGTG	3 cut(s)	21, 231, 1185
Cac8I	GCNNGC	4 cut(s)	140, 545, 587, 1165
CfoI	GCGC	1 cut(s)	718
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	2 cut(s)	118, 823
Csp6I	GTAC	2 cut(s)	778, 835
CspAI	ACCGGT	1 cut(s)	1068
CviAII	CATG	7 cut(s)	51, 207, 266, 586, 665, 851, 1173
CviQI	GTAC	2 cut(s)	778, 835
DdeI	CTNAG	4 cut(s)	495, 685, 719, 753
DpnI	GATC	5 cut(s)	97, 158, 635, 1045, 1188
DpnII	GATC	5 cut(s)	95, 156, 633, 1043, 1186
DraIII	CACNNNGTG	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	1114
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	412
FaeI	CATG	7 cut(s)	54, 210, 269, 589, 668, 854, 1176
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	7 cut(s)	50, 206, 265, 585, 664, 850, 1172
Fnu4HI	GCNGC	3 cut(s)	104, 107, 714
FokI	GGATG	5 cut(s)	134, 197, 347, 467, 989
Fsp4HI	GCNGC	3 cut(s)	104, 107, 714
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	3 cut(s)	104, 107, 714
GsuI	CTGGAG	3 cut(s)	137, 277, 1076
HaeIII	GGCC	3 cut(s)	119, 1116, 1167
HapII	CCGG	3 cut(s)	368, 1069, 1113
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	7 cut(s)	54, 210, 269, 589, 668, 854, 1176
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HindIII	AAGCTT	3 cut(s)	89, 721, 1216
HinfI	GANTC	6 cut(s)	43, 55, 553, 973, 1121, 1149
HpaII	CCGG	3 cut(s)	368, 1069, 1113
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	3 cut(s)	527, 614, 658
Hpy188I	TCNGA	6 cut(s)	48, 81, 498, 880, 1066, 1148
Hpy188III	TCNNGA	8 cut(s)	154, 160, 256, 295, 462, 659, 687, 1093
Hpy8I	GTNNAC	3 cut(s)	527, 614, 658
HpyAV	CCTTC	3 cut(s)	652, 715, 1206
HpyCH4III	ACNGT	6 cut(s)	326, 451, 593, 655, 867, 889
HpyCH4IV	ACGT	3 cut(s)	126, 833, 1034
HpyCH4V	TGCA	7 cut(s)	29, 106, 236, 410, 475, 589, 1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1169
HpyF3I	CTNAG	4 cut(s)	495, 685, 719, 753
HpySE526I	ACGT	3 cut(s)	126, 833, 1034
Hsp92II	CATG	7 cut(s)	54, 210, 269, 589, 668, 854, 1176
HspAI	GCGC	1 cut(s)	716
Kzo9I	GATC	5 cut(s)	95, 156, 633, 1043, 1186
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	3 cut(s)	90, 118, 700
LweI	GCATC	3 cut(s)	175, 496, 1011
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	126, 833, 1034
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	5 cut(s)	97, 158, 635, 1045, 1188
MboI	GATC	5 cut(s)	95, 156, 633, 1043, 1186
MboII	GAAGA	7 cut(s)	184, 233, 423, 515, 582, 918, 968
MflI	RGATCY	2 cut(s)	156, 1186
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	163, 272, 518, 573, 881
MlyI	GAGTC	2 cut(s)	562, 1115
MmeI	TCCRAC	2 cut(s)	785, 898
MnlI	CCTC	7 cut(s)	155, 161, 302, 375, 391, 394, 647
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	3 cut(s)	884, 1037, 1214
MslI	CAYNNNNRTG	2 cut(s)	14, 663
MspI	CCGG	3 cut(s)	368, 1069, 1113
Mva1269I	GAATGC	2 cut(s)	788, 915
MwoI	GCNNNNNNNGC	1 cut(s)	1169
NdeII	GATC	5 cut(s)	95, 156, 633, 1043, 1186
NlaIII	CATG	7 cut(s)	54, 210, 269, 589, 668, 854, 1176
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	589, 668
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	589
PciI	ACATGT	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	2 cut(s)	788, 915
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	4 cut(s)	43, 55, 973, 1149
PinAI	ACCGGT	1 cut(s)	1068
PkrI	GCNGC	3 cut(s)	105, 108, 715
PleI	GAGTC	2 cut(s)	561, 1115
PpsI	GAGTC	2 cut(s)	561, 1115
PscI	ACATGT	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	2 cut(s)	118, 823
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PstI	CTGCAG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	156, 1186
RsaI	GTAC	2 cut(s)	779, 836
RsaNI	GTAC	2 cut(s)	778, 835
RseI	CAYNNNNRTG	2 cut(s)	14, 663
SaqAI	TTAA	3 cut(s)	884, 1037, 1214
SatI	GCNGC	3 cut(s)	104, 107, 714
Sau3AI	GATC	5 cut(s)	95, 156, 633, 1043, 1186
Sau96I	GGNCC	2 cut(s)	118, 823
SchI	GAGTC	2 cut(s)	562, 1115
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	175, 496, 1011
SfcI	CTRYAG	2 cut(s)	104, 949
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	2 cut(s)	14, 663
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	5 cut(s)	163, 272, 518, 573, 881
SspMI	CTAG	1 cut(s)	351
TaaI	ACNGT	6 cut(s)	326, 451, 593, 655, 867, 889
TaiI	ACGT	3 cut(s)	129, 836, 1037
TaqI	TCGA	3 cut(s)	94, 669, 774
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	5 cut(s)	163, 272, 518, 573, 881
TfiI	GAWTC	4 cut(s)	43, 55, 973, 1149
Tru1I	TTAA	3 cut(s)	884, 1037, 1214
Tru9I	TTAA	3 cut(s)	884, 1037, 1214
TscAI	CASTG	3 cut(s)	21, 238, 1185
TseI	GCWGC	3 cut(s)	103, 106, 713
TspDTI	ATGAA	4 cut(s)	516, 715, 867, 1141
TspRI	CASTG	3 cut(s)	21, 238, 1185
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	2 cut(s)	518, 573
XceI	RCATGY	2 cut(s)	589, 668
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.