Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

4887801 .. 4891004

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1051200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAAAGCATAGCAGTGTGGCAAGGGGCAACACTGTGCGGGATTGTATCCTGGGTGATAGTAGCTTCATATCTCGATGTGACCCGAAAGCTTCGATCTTTGCTGCAACCATGGGTGGCCCACCATGTCACCGCCGGCACTCCTCTCATCCTCCAGATCCAGAATTATCAGCATAGATTCTTGGATGCTTTCTTCTCTGCCTTGTCATGTGTTGTTTCTGTGCCATTTTACACTGCTTTTCTTCCTTTGCTTTTCTGGAGCGGGCATGGAAAATTGGCTAGACAAATGACTCTGCTGATGGCTTTCTGTGATTATATGGGGAACTGCATAAAGGATGTGGTATCAGCTCCTAGACCTCGTTGCCCACCCGTTAGAAGAATAACCGCTACGAAAGATGAGGAAGATAATGCTTTGGAATATGGATTGCCATCTTCTCACACTCTAAACACAATTTGCTTATCCGGATTCCTTTTGCATTACATCCTATCGTATTCTCAGAATGAAGATGCCCATGTTAAAATTGCTGGATTGGCTCTTGTTTGCTTGCTTGTGGGTTTCATTGGTTTAGGAAGAATTTATCTCGGCATGCACAGTCCTATTGATATCATAAGTGGCCTTGCTATTGGATTGGTGATTCTTTGGTTCTGGCTCAGTGTTCACAAATATGTTGACAGTTTTGTAGTCTCGGGACAAAATGTTACATCCTCTTGGGCTGCCCTAAGCTTGATACTGCTTTTTGCTTATCCAACTCCTGAGTTCCCAACTCCAAGTTTTGAGTACCACACAGCCTTCAACGGCGTTGCATTCGGAATTGTATCTGGGGTCCAGCAGACGTACCATCAGTTCCACCATGAAGCCGTTCCACGTGTATTTACATCACAATTAACCGCCCCTGGCTTTATGGGAAGAATGCTTGTGGGAATACCAACCATACTTATCGTGAAGTTCTGTAGCAAAGCTCTTGCTAAATGGATTCTTCCAGTGCTGGCCAACACCCTCGGTATCCCAATAAGATCAACCACTTACGTCGCATCGCTAAAGGGATCGAGTGATGGCAAAAAATCAGATGGTTTGAAGCAATCGGGTTATGTCCAAAAGCTGTTCATTTTCTCCAGCCAAGAATCGTTTGACGTTGATACAGGCATAAGATTCCTTCAATATGCCGGCCTGGCATGGTCCGTCGTCGATCTTGTTCCTTCCCTTTTCTCTCATCTAAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

408

Amino Acids

44.97

Weight (kDa)

8.7

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	96 - 222	3.1e-21	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	5 cut(s)	39, 132, 261, 384, 888
AclWI	GGATC	2 cut(s)	151, 1051
AcoI	YGGCCR	1 cut(s)	987
AcsI	RAATTY	1 cut(s)	573
AcvI	CACGTG	1 cut(s)	866
AfaI	GTAC	2 cut(s)	779, 836
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	3 cut(s)	793, 1075, 1157
AjnI	CCWGG	3 cut(s)	50, 892, 1167
AluBI	AGCT	6 cut(s)	65, 91, 347, 723, 959, 1099
AluI	AGCT	6 cut(s)	65, 91, 347, 723, 959, 1099
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	2 cut(s)	151, 1051
Ama87I	CYCGRG	1 cut(s)	685
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	4 cut(s)	117, 613, 987, 1165
ApeKI	GCWGC	2 cut(s)	103, 713
ApoI	RAATTY	1 cut(s)	573
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	3 cut(s)	118, 823, 1176
AsuHPI	GGTGA	3 cut(s)	67, 121, 643
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	2 cut(s)	823, 1176
BalI	TGGCCA	1 cut(s)	989
BbrPI	CACGTG	1 cut(s)	866
BbvI	GCAGC	2 cut(s)	90, 700
BccI	CCATC	5 cut(s)	292, 436, 846, 1046, 1061
BceAI	ACGGC	2 cut(s)	811, 842
BciT130I	CCWGG	3 cut(s)	52, 894, 1169
BciVI	GTATCC	2 cut(s)	58, 1013
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	2 cut(s)	279, 351
BfmI	CTRYAG	1 cut(s)	949
BfuI	GTATCC	2 cut(s)	58, 1013
BglI	GCCNNNNNGGC	1 cut(s)	1169
BisI	GCNGC	2 cut(s)	104, 714
BlsI	GCNGC	2 cut(s)	105, 715
Bme1390I	CCNGG	3 cut(s)	52, 894, 1169
Bme18I	GGWCC	2 cut(s)	823, 1176
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	3 cut(s)	118, 823, 1176
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	3 cut(s)	52, 894, 1169
BmsI	GCATC	3 cut(s)	175, 496, 1040
BpmI	CTGGAG	3 cut(s)	137, 277, 1096
Bpu10I	CCTNAGC	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	427
BsaJI	CCNNGG	4 cut(s)	51, 110, 892, 997
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	2 cut(s)	134, 1163
Bse1I	ACTGG	1 cut(s)	980
Bse8I	GATNNNNATC	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	52, 894, 1169
BseDI	CCNNGG	4 cut(s)	51, 110, 892, 997
BseGI	GGATG	5 cut(s)	147, 190, 340, 480, 701
BseJI	GATNNNNATC	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	509, 664, 744
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	90, 700
BshFI	GGCC	4 cut(s)	119, 615, 989, 1167
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	3 cut(s)	135, 462, 1164
BslFI	GGGAC	1 cut(s)	702
BsmAI	GTCTC	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	702
BsmI	GAATGC	2 cut(s)	803, 915
BsnI	GGCC	4 cut(s)	119, 615, 989, 1167
BsoBI	CYCGRG	1 cut(s)	685
Bsp13I	TCCGGA	1 cut(s)	461
Bsp143I	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	39, 132, 261, 384, 888
BspANI	GGCC	4 cut(s)	119, 615, 989, 1167
BspCNI	CTCAG	3 cut(s)	508, 663, 745
BspEI	TCCGGA	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	151, 1051
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	2 cut(s)	134, 1163
BsrI	ACTGG	1 cut(s)	980
BssAI	RCCGGY	2 cut(s)	134, 1163
BssECI	CCNNGG	4 cut(s)	51, 110, 892, 997
BssMI	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	52, 894, 1169
Bst4CI	ACNGT	3 cut(s)	36, 593, 674
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	6 cut(s)	136, 263, 545, 587, 987, 1165
BstDEI	CTNAG	5 cut(s)	495, 650, 719, 753, 1214
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	5 cut(s)	147, 190, 340, 480, 701
BstKTI	GATC	5 cut(s)	98, 159, 1016, 1046, 1189
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 1169
BstNI	CCWGG	3 cut(s)	52, 894, 1169
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	50, 892, 1167
BstSFI	CTRYAG	1 cut(s)	949
BstV1I	GCAGC	2 cut(s)	90, 700
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuI	GTATCC	2 cut(s)	58, 1013
BsuRI	GGCC	4 cut(s)	119, 615, 989, 1167
BtgI	CCRYGG	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	5 cut(s)	147, 190, 340, 480, 701
BtsI	GCAGTG	2 cut(s)	21, 231
BtsIMutI	CAGTG	5 cut(s)	21, 32, 231, 658, 987
Cac8I	GCNNGC	6 cut(s)	136, 263, 545, 587, 987, 1165
Cfr10I	RCCGGY	2 cut(s)	134, 1163
Cfr13I	GGNCC	3 cut(s)	118, 823, 1176
Csp6I	GTAC	2 cut(s)	778, 835
CviAII	CATG	8 cut(s)	111, 125, 207, 266, 512, 586, 851, 1173
CviQI	GTAC	2 cut(s)	778, 835
DdeI	CTNAG	5 cut(s)	495, 650, 719, 753, 1214
DpnI	GATC	5 cut(s)	97, 158, 1015, 1045, 1188
DpnII	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
EaeI	YGGCCR	1 cut(s)	987
Eco130I	CCWWGG	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	823, 1176
Eco72I	CACGTG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	685
EcoRII	CCWGG	3 cut(s)	50, 892, 1167
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	8 cut(s)	114, 128, 210, 269, 515, 589, 854, 1176
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	8 cut(s)	110, 124, 206, 265, 511, 585, 850, 1172
FauI	CCCGC	2 cut(s)	32, 254
Fnu4HI	GCNGC	2 cut(s)	104, 714
FokI	GGATG	5 cut(s)	134, 197, 347, 467, 688
Fsp4HI	GCNGC	2 cut(s)	104, 714
FspBI	CTAG	2 cut(s)	279, 351
GluI	GCNGC	2 cut(s)	104, 714
GsuI	CTGGAG	3 cut(s)	137, 277, 1096
HaeIII	GGCC	4 cut(s)	119, 615, 989, 1167
HapII	CCGG	3 cut(s)	135, 462, 1164
Hin1II	CATG	8 cut(s)	114, 128, 210, 269, 515, 589, 854, 1176
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	2 cut(s)	89, 721
HinfI	GANTC	7 cut(s)	177, 289, 465, 634, 973, 1121, 1149
HpaII	CCGG	3 cut(s)	135, 462, 1164
HphI	GGTGA	3 cut(s)	67, 121, 643
Hpy166II	GTNNAC	2 cut(s)	658, 670
Hpy188I	TCNGA	3 cut(s)	498, 809, 1066
Hpy188III	TCNNGA	8 cut(s)	74, 154, 160, 256, 462, 687, 752, 940
Hpy8I	GTNNAC	2 cut(s)	658, 670
Hpy99I	CGWCG	3 cut(s)	1031, 1184, 1187
HpyAV	CCTTC	3 cut(s)	799, 1163, 1206
HpyCH4III	ACNGT	3 cut(s)	36, 593, 674
HpyCH4IV	ACGT	4 cut(s)	833, 865, 1026, 1131
HpyCH4V	TGCA	5 cut(s)	106, 327, 475, 589, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 1169
HpyF3I	CTNAG	5 cut(s)	495, 650, 719, 753, 1214
HpySE526I	ACGT	4 cut(s)	833, 865, 1026, 1131
Hsp92II	CATG	8 cut(s)	114, 128, 210, 269, 515, 589, 854, 1176
Kpn2I	TCCGGA	1 cut(s)	461
KroI	GCCGGC	2 cut(s)	134, 1163
KroNI	GCCGGC	2 cut(s)	136, 1165
Kzo9I	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
LmnI	GCTCC	2 cut(s)	258, 352
Lsp1109I	GCAGC	2 cut(s)	90, 700
LweI	GCATC	3 cut(s)	175, 496, 1040
MaeI	CTAG	2 cut(s)	279, 351
MaeII	ACGT	4 cut(s)	833, 865, 1026, 1131
MaeIII	GTNAC	3 cut(s)	79, 127, 697
MalI	GATC	5 cut(s)	97, 158, 1015, 1045, 1188
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
MboII	GAAGA	9 cut(s)	184, 233, 387, 413, 423, 515, 582, 918, 968
MflI	RGATCY	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	989
MluCI	AATT	7 cut(s)	163, 272, 450, 519, 573, 810, 881
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	770
MnlI	CCTC	6 cut(s)	153, 161, 366, 391, 715, 1007
Mox20I	TGGCCA	1 cut(s)	989
MroI	TCCGGA	1 cut(s)	461
MroNI	GCCGGC	2 cut(s)	134, 1163
MroXI	GAANNNNTTC	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	2 cut(s)	516, 884
MslI	CAYNNNNRTG	2 cut(s)	14, 663
Msp20I	TGGCCA	1 cut(s)	989
MspI	CCGG	3 cut(s)	135, 462, 1164
MspR9I	CCNGG	3 cut(s)	52, 894, 1169
Mva1269I	GAATGC	2 cut(s)	803, 915
MvaI	CCWGG	3 cut(s)	52, 894, 1169
MwoI	GCNNNNNNNGC	2 cut(s)	530, 1169
NaeI	GCCGGC	2 cut(s)	136, 1165
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
NgoMIV	GCCGGC	2 cut(s)	134, 1163
NlaIII	CATG	8 cut(s)	114, 128, 210, 269, 515, 589, 854, 1176
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	79, 127
NspI	RCATGY	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	589
PctI	GAATGC	2 cut(s)	803, 915
PdiI	GCCGGC	2 cut(s)	136, 1165
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	6 cut(s)	177, 465, 634, 973, 1121, 1149
PkrI	GCNGC	2 cut(s)	105, 715
PleI	GAGTC	1 cut(s)	283
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	866
Psp6I	CCWGG	3 cut(s)	50, 892, 1167
PspCI	CACGTG	1 cut(s)	866
PspGI	CCWGG	3 cut(s)	50, 892, 1167
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	3 cut(s)	118, 823, 1176
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	779, 836
RsaNI	GTAC	2 cut(s)	778, 835
RseI	CAYNNNNRTG	2 cut(s)	14, 663
SaqAI	TTAA	2 cut(s)	516, 884
SatI	GCNGC	2 cut(s)	104, 714
Sau3AI	GATC	5 cut(s)	95, 156, 1013, 1043, 1186
Sau96I	GGNCC	3 cut(s)	118, 823, 1176
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	52, 894, 1169
SfaNI	GCATC	3 cut(s)	175, 496, 1040
SfcI	CTRYAG	1 cut(s)	949
SinI	GGWCC	2 cut(s)	823, 1176
SmiMI	CAYNNNNRTG	2 cut(s)	14, 663
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	7 cut(s)	163, 272, 450, 519, 573, 810, 881
SsiI	CCGC	5 cut(s)	39, 132, 261, 384, 888
SspMI	CTAG	2 cut(s)	279, 351
StyD4I	CCNGG	3 cut(s)	50, 892, 1167
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	36, 593, 674
TaiI	ACGT	4 cut(s)	836, 868, 1029, 1134
TaqI	TCGA	4 cut(s)	75, 94, 1046, 1185
TasI	AATT	7 cut(s)	163, 272, 450, 519, 573, 810, 881
TfiI	GAWTC	6 cut(s)	177, 465, 634, 973, 1121, 1149
Tru1I	TTAA	2 cut(s)	516, 884
Tru9I	TTAA	2 cut(s)	516, 884
TscAI	CASTG	5 cut(s)	21, 39, 238, 658, 987
TseFI	GTSAC	2 cut(s)	79, 127
TseI	GCWGC	2 cut(s)	103, 713
Tsp45I	GTSAC	2 cut(s)	79, 127
TspDTI	ATGAA	5 cut(s)	57, 516, 547, 867, 1093
TspGWI	ACGGA	1 cut(s)	1168
TspRI	CASTG	5 cut(s)	21, 39, 238, 658, 987
VpaK11BI	GGWCC	2 cut(s)	823, 1176
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	2 cut(s)	279, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.