Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Reverse (-)

26200000 .. 26202815

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGAGCACAGCAGTGTGGCAAGGGGCAACACTCTGTGGGATTCTCACATGGATTCTAATGTCTTCTTATCTCAATCTGACCCCAAAGCTTCGATCTTTGCTGCAACCGTGGGTGGCCCATCATGTCATCACAGGCACGCCCCTCGTCCTCCAGATCCAGAATTACCAGCATGGGTTCTTGGATGCTTTCTTCTCTGCTTTGTCCTGTGTTGTCTCTGTGCCCTTTTACACTGCTTTTCTTCCTCTGCTTTTCTGGAGTGGGCATGGCAAATTGGCAAGGCAAATGACCCTCTTGATGGCTTTCTGTGATTACTTGGGGAACTGTATAAAGGATGTGGTATCAGCTCCTAGACCGAGTTGCCCTCCTGTTAGGAGAATAACAGCTACGAGTGATGAGGAGGATAATGCATTGGAATATGGATTGCCATCTTCTCACACTCTAAACACAGTTTGCTTGTCTGGATACCTTTTGCATTACATCCTATCTTATGCTCAGAATGAAGATGTGTATGTGAAATTTGCTGGATTTGCTCTTGTTTGCTTGCTTGTGGGTCTCATTGGTTTGGGAAGAGTTTATCTCGGCATGCACAGTCCTGTTGATATTATTGGTGGGCTTGCTGTTGGTTTGCTGATCCTTTCCTTCTGGCTTACTGTTTACGAATATGTCGACAGTTTTGTAGTCTCAGGACAAAATGTTACAAGCTTTTGGGCCGCCCTAAGCTTCATATTGCTCTTTGCTTATCCAACTCCGGAGTTTCCAACTCCAAGTTTTGAGTACCACACAGCATTCAATGGTGTTGCATTAGGCATTGTATCGGGGGTCCAGCAAACATACCACCAGTTTCACCATGAAGCTGTTCCACGTATATTTACATCACAATTAACAATCCCTGGCTTTATGGGAAGAATGCTGGTTGGGATACCAACAATACTTATTGTGAAGTTCTGTAGTAAAGCTCTTGCTAAATGGATTCTTCCTGTGGTAGCCAATGCCTTGGGCATCCCAATAAAATCAACTACATACATTCCTACGCTAAATGGATTAAGCAACGGGAAAAAATCAGATGGGTCGAAGCAGTCAGGTTATCTCCAGAAGCTGTACCTTTTCTCCAGCCAAGGCTCATTTGATGTCGATACTGGTATAAGATTCATTCAATATGCTGGCCTTGCATGGTCAGTGGTAGATCTTGTTCCTTCGCTTTTCTCTCAGCTAAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

408

Amino Acids

44.73

Weight (kDa)

7.14

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	96 - 222	6e-21	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	669
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	1 cut(s)	714
AclWI	GGATC	2 cut(s)	151, 628
AcsI	RAATTY	1 cut(s)	518
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	779, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	793, 1157
AjnI	CCWGG	1 cut(s)	892
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	220, 560, 688
AlwI	GGATC	2 cut(s)	151, 628
AlwNI	CAGNNNCTG	1 cut(s)	1099
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	3 cut(s)	117, 711, 1165
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	3 cut(s)	118, 711, 823
AsuHPI	GGTGA	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	4 cut(s)	129, 292, 436, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	894
BciVI	GTATCC	2 cut(s)	458, 915
BcoDI	GTCTC	3 cut(s)	220, 560, 688
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	949
BfuI	GTATCC	2 cut(s)	458, 915
BglII	AGATCT	1 cut(s)	1186
BisI	GCNGC	2 cut(s)	104, 714
BlpI	GCTNAGC	1 cut(s)	1214
BlsI	GCNGC	2 cut(s)	105, 715
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	3 cut(s)	118, 711, 823
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	2 cut(s)	175, 1011
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	4 cut(s)	349, 381, 564, 596
BpmI	CTGGAG	4 cut(s)	137, 277, 1076, 1096
Bpu10I	CCTNAGC	1 cut(s)	719
Bpu1102I	GCTNAGC	1 cut(s)	1214
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	110, 892, 996, 1117
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	1094, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	841, 1144
Bse8I	GATNNNNATC	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	4 cut(s)	110, 892, 996, 1117
BseGI	GGATG	4 cut(s)	190, 340, 480, 1002
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	509, 699, 1223
BseNI	ACTGG	2 cut(s)	841, 1144
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	90
BshFI	GGCC	3 cut(s)	119, 713, 1167
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	3 cut(s)	220, 560, 688
BsmI	GAATGC	2 cut(s)	788, 915
BsnI	GGCC	3 cut(s)	119, 713, 1167
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	11, 225
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	95, 156, 633, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1214
BspACI	CCGC	1 cut(s)	714
BspANI	GGCC	3 cut(s)	119, 713, 1167
BspCNI	CTCAG	3 cut(s)	508, 698, 1222
BspEI	TCCGGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	151, 628
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	841, 1144
BssECI	CCNNGG	4 cut(s)	110, 892, 996, 1117
BssMI	GATC	4 cut(s)	95, 156, 633, 1186
BssT1I	CCWWGG	2 cut(s)	996, 1117
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	6 cut(s)	111, 326, 451, 593, 655, 674
Bst6I	CTCTTC	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	5 cut(s)	140, 545, 587, 618, 1165
BstDEI	CTNAG	5 cut(s)	495, 685, 719, 1209, 1214
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	190, 340, 480, 1002
BstKTI	GATC	4 cut(s)	98, 159, 636, 1189
BstMAI	GTCTC	3 cut(s)	220, 560, 688
BstMBI	GATC	4 cut(s)	95, 156, 633, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 1169
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	949
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	156, 1186
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	2 cut(s)	156, 1186
BsuI	GTATCC	2 cut(s)	458, 915
BsuRI	GGCC	3 cut(s)	119, 713, 1167
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	4 cut(s)	190, 340, 480, 1002
BtsI	GCAGTG	2 cut(s)	21, 231
BtsIMutI	CAGTG	3 cut(s)	21, 231, 1185
Cac8I	GCNNGC	5 cut(s)	140, 545, 587, 618, 1165
CaiI	CAGNNNCTG	1 cut(s)	1099
Cfr13I	GGNCC	3 cut(s)	118, 711, 823
Csp6I	GTAC	2 cut(s)	778, 1102
CviAII	CATG	7 cut(s)	51, 125, 173, 266, 586, 851, 1173
CviQI	GTAC	2 cut(s)	778, 1102
DdeI	CTNAG	5 cut(s)	495, 685, 719, 1209, 1214
DpnI	GATC	4 cut(s)	97, 158, 635, 1188
DpnII	GATC	4 cut(s)	95, 156, 633, 1186
DraIII	CACNNNGTG	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	996, 1117
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	2 cut(s)	996, 1117
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	996, 1117
FaeI	CATG	7 cut(s)	54, 128, 176, 269, 589, 854, 1176
FatI	CATG	7 cut(s)	50, 124, 172, 265, 585, 850, 1172
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	2 cut(s)	104, 714
FokI	GGATG	4 cut(s)	197, 347, 467, 989
Fsp4HI	GCNGC	2 cut(s)	104, 714
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	104, 714
GsuI	CTGGAG	4 cut(s)	137, 277, 1076, 1096
HaeIII	GGCC	3 cut(s)	119, 713, 1167
HapII	CCGG	1 cut(s)	752
Hin1II	CATG	7 cut(s)	54, 128, 176, 269, 589, 854, 1176
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	4 cut(s)	89, 703, 721, 1216
HinfI	GANTC	4 cut(s)	43, 55, 973, 1149
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	2 cut(s)	658, 670
Hpy188I	TCNGA	3 cut(s)	81, 498, 1066
Hpy188III	TCNNGA	8 cut(s)	154, 160, 256, 295, 462, 687, 752, 1093
Hpy8I	GTNNAC	2 cut(s)	658, 670
HpyAV	CCTTC	2 cut(s)	652, 1206
HpyCH4III	ACNGT	6 cut(s)	111, 326, 451, 593, 655, 674
HpyCH4IV	ACGT	1 cut(s)	865
HpyCH4V	TGCA	6 cut(s)	106, 410, 475, 589, 803, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 1169
HpyF3I	CTNAG	5 cut(s)	495, 685, 719, 1209, 1214
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	7 cut(s)	54, 128, 176, 269, 589, 854, 1176
Kpn2I	TCCGGA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	95, 156, 633, 1186
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	175, 1011
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	4 cut(s)	97, 158, 635, 1188
MboI	GATC	4 cut(s)	95, 156, 633, 1186
MboII	GAAGA	8 cut(s)	57, 184, 233, 423, 515, 582, 918, 968
MflI	RGATCY	2 cut(s)	156, 1186
MhlI	GDGCHC	2 cut(s)	11, 225
MluCI	AATT	4 cut(s)	163, 272, 518, 881
MmeI	TCCRAC	2 cut(s)	770, 785
MnlI	CCTC	7 cut(s)	155, 161, 255, 302, 375, 391, 394
Mph1103I	ATGCAT	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	2 cut(s)	884, 1046
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	894
Mva1269I	GAATGC	2 cut(s)	788, 915
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	2 cut(s)	530, 1169
NdeII	GATC	4 cut(s)	95, 156, 633, 1186
NlaIII	CATG	7 cut(s)	54, 128, 176, 269, 589, 854, 1176
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	589
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	2 cut(s)	788, 915
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	4 cut(s)	43, 55, 973, 1149
PkrI	GCNGC	2 cut(s)	105, 715
Ppu21I	YACGTR	1 cut(s)	866
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	3 cut(s)	118, 711, 823
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PstNI	CAGNNNCTG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	156, 1186
RsaI	GTAC	2 cut(s)	779, 1103
RsaNI	GTAC	2 cut(s)	778, 1102
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	884, 1046
SatI	GCNGC	2 cut(s)	104, 714
Sau3AI	GATC	4 cut(s)	95, 156, 633, 1186
Sau96I	GGNCC	3 cut(s)	118, 711, 823
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	2 cut(s)	11, 225
SfaNI	GCATC	2 cut(s)	175, 1011
SfcI	CTRYAG	1 cut(s)	949
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	4 cut(s)	163, 272, 518, 881
SsiI	CCGC	1 cut(s)	714
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	892
StyI	CCWWGG	2 cut(s)	996, 1117
TaaI	ACNGT	6 cut(s)	111, 326, 451, 593, 655, 674
TaiI	ACGT	1 cut(s)	868
TaqI	TCGA	4 cut(s)	94, 669, 1073, 1134
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	4 cut(s)	163, 272, 518, 881
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	43, 55, 973, 1149
Tru1I	TTAA	2 cut(s)	884, 1046
Tru9I	TTAA	2 cut(s)	884, 1046
TscAI	CASTG	3 cut(s)	21, 238, 1185
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	516, 715, 867, 1141
TspRI	CASTG	3 cut(s)	21, 238, 1185
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.