Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

4470243 .. 4473213

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTCCATATATATTAAAAAATTATTTTGTTCGGTTTTCTTTGTTTTCTGCGTCTCTCATAGCCTCCTCCTTGTTCTTCTCTCTGAGACAGAAACACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAAGAAGGGAATGGAGAGCATAGCAGTGTGGCAAGGGGCAACACTCTGCGGGATTGTGTCATGGGTGATAGTAGCTTCATATCTCGATGTGACTCGAAAGCTTCGATCTTTCCTGCAACCATGGGTGGCCCACCATGTCACCGCCGGCACTCCTCTCATCCTCCAGATCCAGAACTACCAGCATAGATCCTTGGATTCTTTCTTCTCTGCCTTGTCCTGTGTTGTGTCTGTGCCATTTTACAGTGCTTTTCTTCCTTTGCTTTTCTGGAGCGGTCATGGCAAATTGGCAAGGCAAATGACTCTGTTGATGGCTTTCTGTGATTATATGGGGAACTGCATAAAGGATGTGGTATCAGCTCCTAGACCTTGTTGCCCACCTGTTAGAAGAATAACCGCTACGAAAGATGAGGAAGATAATGCTTTGGAATATGGATTGCCATCTTCTCACACTCTAAACACAGTATGCTTATCCGGATTCCTTTTGCATTACATCCTATCGTATACTCAGAATGAAGATGCCCGTGTTAAAATTGCTGGATTCGCTCTTGTTTGCTTGCTTGTGGGTTTCATTGGTTTAGGAAGAATTTATCTCGGCATGCACAGTGCTATTGATATCATAAGTGGGCTTGCTATTGGACTGGTGATTCTTTGGTTCTGGCTCAGTGTTTACAAATACGTTGACAGTTTTGTAGTCTCGGGACAAAATGTAACATCCTTTTGGGCTGGCCTAAGCTTGATACTGCTTTTTGCTTATCCAACTCCTGAGTTTCCGACTCCAAGTTTTGAGTACCACACAGCCTTCAATGGTGTTGCATTAGGAATTGTATCTGGGGTCCAGCAGACGTACCTTCAGTTCCACCATGAAGCCGTTCCACGTGTATTTACATCACAATTAACCGCCCCTGGCTTTATGGGAAGAATGCTTGTGGGAATACCAACCATACTTATCGTGAAGTTCTGTAGCAAAGCTCTTGCTAAATGGATTCTTCCAGTGCTAGCCAACACCTTGGGCATCCCAATAAGATCAACCACTTACATCGCGTCGCTAAGGGGATCAGATGATGGCAAAAAATCAGATGGCTTGAAGCAATCAGGTTATGTCCAAAAACTGTTCTTTTTCTCCGGCCAAGAATCGTTTGACGTTGATACTGGTATAAGATTCCTTCAATATGCAGGCCTGGCATGGTCCGTCGTTGATCTTGTTCCTTCCCTTTTCTCTCATCTACGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

457

Amino Acids

50.93

Weight (kDa)

8.78

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	638
AccII	CGCG	1 cut(s)	1178
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	5 cut(s)	186, 279, 408, 531, 1035
AclWI	GGATC	3 cut(s)	298, 318, 1198
AcoI	YGGCCR	1 cut(s)	1261
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	971
AcvI	CACGTG	1 cut(s)	1013
AfaI	GTAC	2 cut(s)	926, 983
AflIII	ACRYGT	1 cut(s)	1012
AgsI	TTSAA	3 cut(s)	940, 1222, 1304
AjnI	CCWGG	2 cut(s)	1039, 1314
AluBI	AGCT	5 cut(s)	212, 238, 494, 870, 1106
AluI	AGCT	5 cut(s)	212, 238, 494, 870, 1106
Alw26I	GTCTC	3 cut(s)	58, 80, 835
AlwI	GGATC	3 cut(s)	298, 318, 1198
Ama87I	CYCGRG	1 cut(s)	832
Aor13HI	TCCGGA	1 cut(s)	608
AoxI	GGCC	4 cut(s)	264, 862, 1261, 1312
ApoI	RAATTY	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspS9I	GGNCC	3 cut(s)	265, 970, 1323
AsuHPI	GGTGA	3 cut(s)	214, 268, 790
AsuNHI	GCTAGC	1 cut(s)	1132
AvaI	CYCGRG	1 cut(s)	832
AvaII	GGWCC	2 cut(s)	970, 1323
BbrPI	CACGTG	1 cut(s)	1013
BccI	CCATC	4 cut(s)	439, 583, 1193, 1208
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	2 cut(s)	1041, 1316
BcoDI	GTCTC	3 cut(s)	58, 80, 835
BfaI	CTAG	2 cut(s)	498, 1133
BfmI	CTRYAG	1 cut(s)	1096
Bme1390I	CCNGG	2 cut(s)	1041, 1316
Bme18I	GGWCC	2 cut(s)	970, 1323
BmeT110I	CYCGRG	1 cut(s)	832
BmgT120I	GGNCC	3 cut(s)	265, 970, 1323
BmiI	GGNNCC	1 cut(s)	971
BmrFI	CCNGG	2 cut(s)	1041, 1316
BmsI	GCATC	2 cut(s)	643, 1158
BmtI	GCTAGC	1 cut(s)	1136
BpmI	CTGGAG	2 cut(s)	284, 424
Bpu10I	CCTNAGC	2 cut(s)	866, 1184
BsaAI	YACGTR	1 cut(s)	1013
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	4 cut(s)	257, 327, 1039, 1143
BsaWI	WCCGGW	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	780, 1127, 1291
Bse8I	GATNNNNATC	1 cut(s)	574
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	1041, 1316
BseDI	CCNNGG	4 cut(s)	257, 327, 1039, 1143
BseGI	GGATG	5 cut(s)	294, 487, 627, 848, 1149
BseJI	GATNNNNATC	1 cut(s)	574
BseMII	CTCAG	4 cut(s)	75, 656, 811, 891
BseNI	ACTGG	3 cut(s)	780, 1127, 1291
BseRI	GAGGAG	3 cut(s)	56, 147, 279
Bsh1236I	CGCG	1 cut(s)	1178
BshFI	GGCC	4 cut(s)	266, 864, 1263, 1314
BsiHKCI	CYCGRG	1 cut(s)	832
BsiSI	CCGG	3 cut(s)	282, 609, 1260
BslFI	GGGAC	1 cut(s)	849
BsmAI	GTCTC	3 cut(s)	58, 80, 835
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	849
BsmI	GAATGC	1 cut(s)	1062
BsnI	GGCC	4 cut(s)	266, 864, 1263, 1314
BsoBI	CYCGRG	1 cut(s)	832
Bsp13I	TCCGGA	1 cut(s)	608
Bsp143I	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
Bsp19I	CCATGG	1 cut(s)	257
BspACI	CCGC	5 cut(s)	186, 279, 408, 531, 1035
BspANI	GGCC	4 cut(s)	266, 864, 1263, 1314
BspCNI	CTCAG	4 cut(s)	76, 655, 810, 892
BspEI	TCCGGA	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	1178
BspLI	GGNNCC	1 cut(s)	971
BspOI	GCTAGC	1 cut(s)	1136
BspPI	GGATC	3 cut(s)	298, 318, 1198
BsrBI	CCGCTC	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	780, 1127, 1291
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	4 cut(s)	257, 327, 1039, 1143
BssMI	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
BssNAI	GTATAC	1 cut(s)	639
BssT1I	CCWWGG	3 cut(s)	257, 327, 1143
Bst1107I	GTATAC	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	1041, 1316
Bst4CI	ACNGT	5 cut(s)	380, 598, 740, 821, 1248
BstBAI	YACGTR	1 cut(s)	1013
BstC8I	GCNNGC	7 cut(s)	283, 692, 734, 765, 862, 1134, 1312
BstDEI	CTNAG	6 cut(s)	84, 642, 797, 866, 900, 1184
BstDSI	CCRYGG	1 cut(s)	257
BstF5I	GGATG	5 cut(s)	294, 487, 627, 848, 1149
BstFNI	CGCG	1 cut(s)	1178
BstKTI	GATC	6 cut(s)	245, 306, 326, 1163, 1193, 1336
BstMAI	GTCTC	3 cut(s)	58, 80, 835
BstMBI	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
BstMWI	GCNNNNNNNGC	3 cut(s)	414, 677, 1316
BstNI	CCWGG	2 cut(s)	1041, 1316
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	1039, 1314
BstSFI	CTRYAG	1 cut(s)	1096
BstUI	CGCG	1 cut(s)	1178
BstX2I	RGATCY	2 cut(s)	303, 323
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BstYI	RGATCY	2 cut(s)	303, 323
BstZ17I	GTATAC	1 cut(s)	639
BsuRI	GGCC	4 cut(s)	266, 864, 1263, 1314
BtgI	CCRYGG	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	1159
BtsCI	GGATG	5 cut(s)	294, 487, 627, 848, 1149
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	5 cut(s)	168, 385, 745, 805, 1134
Cac8I	GCNNGC	7 cut(s)	283, 692, 734, 765, 862, 1134, 1312
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	265, 970, 1323
CseI	GACGC	2 cut(s)	40, 1167
Csp6I	GTAC	2 cut(s)	925, 982
CviAII	CATG	7 cut(s)	198, 258, 272, 413, 733, 998, 1320
CviQI	GTAC	2 cut(s)	925, 982
DdeI	CTNAG	6 cut(s)	84, 642, 797, 866, 900, 1184
DpnI	GATC	6 cut(s)	244, 305, 325, 1162, 1192, 1335
DpnII	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
EaeI	YGGCCR	1 cut(s)	1261
Eco130I	CCWWGG	3 cut(s)	257, 327, 1143
Eco147I	AGGCCT	1 cut(s)	1314
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	970, 1323
Eco57I	CTGAAG	1 cut(s)	971
Eco72I	CACGTG	1 cut(s)	1013
Eco88I	CYCGRG	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	1039, 1314
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	3 cut(s)	257, 327, 1143
ErhI	CCWWGG	3 cut(s)	257, 327, 1143
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	7 cut(s)	201, 261, 275, 416, 736, 1001, 1323
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	7 cut(s)	197, 257, 271, 412, 732, 997, 1319
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	638
FokI	GGATG	5 cut(s)	281, 494, 614, 835, 1136
FspBI	CTAG	2 cut(s)	498, 1133
GsuI	CTGGAG	2 cut(s)	284, 424
HaeIII	GGCC	4 cut(s)	266, 864, 1263, 1314
HapII	CCGG	3 cut(s)	282, 609, 1260
HgaI	GACGC	2 cut(s)	40, 1167
Hin1II	CATG	7 cut(s)	201, 261, 275, 416, 736, 1001, 1323
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	2 cut(s)	236, 868
HpaII	CCGG	3 cut(s)	282, 609, 1260
HphI	GGTGA	3 cut(s)	214, 268, 790
Hpy166II	GTNNAC	3 cut(s)	639, 805, 817
Hpy188I	TCNGA	5 cut(s)	85, 645, 909, 1195, 1213
Hpy188III	TCNNGA	8 cut(s)	221, 301, 307, 403, 609, 834, 899, 1087
Hpy8I	GTNNAC	3 cut(s)	639, 805, 817
Hpy99I	CGWCG	2 cut(s)	1183, 1331
HpyAV	CCTTC	5 cut(s)	136, 946, 995, 1310, 1353
HpyCH4III	ACNGT	5 cut(s)	380, 598, 740, 821, 1248
HpyCH4IV	ACGT	4 cut(s)	813, 980, 1012, 1278
HpyCH4V	TGCA	6 cut(s)	253, 474, 622, 736, 950, 1310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	414, 677, 1316
HpyF3I	CTNAG	6 cut(s)	84, 642, 797, 866, 900, 1184
HpySE526I	ACGT	4 cut(s)	813, 980, 1012, 1278
Hsp92II	CATG	7 cut(s)	201, 261, 275, 416, 736, 1001, 1323
Kpn2I	TCCGGA	1 cut(s)	608
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
LmnI	GCTCC	2 cut(s)	405, 499
LweI	GCATC	2 cut(s)	643, 1158
MaeI	CTAG	2 cut(s)	498, 1133
MaeII	ACGT	4 cut(s)	813, 980, 1012, 1278
MaeIII	GTNAC	3 cut(s)	226, 274, 844
MalI	GATC	6 cut(s)	244, 305, 325, 1162, 1192, 1335
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
MflI	RGATCY	2 cut(s)	303, 323
MluCI	AATT	6 cut(s)	20, 419, 666, 720, 957, 1028
MlyI	GAGTC	3 cut(s)	223, 430, 904
MmeI	TCCRAC	2 cut(s)	917, 932
MnlI	CCTC	6 cut(s)	74, 77, 125, 300, 308, 538
MroI	TCCGGA	1 cut(s)	608
MroNI	GCCGGC	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	3 cut(s)	15, 663, 1031
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	3 cut(s)	282, 609, 1260
MspR9I	CCNGG	2 cut(s)	1041, 1316
Mva1269I	GAATGC	1 cut(s)	1062
MvaI	CCWGG	2 cut(s)	1041, 1316
MvnI	CGCG	1 cut(s)	1178
MwoI	GCNNNNNNNGC	3 cut(s)	414, 677, 1316
NaeI	GCCGGC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	257
NdeII	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
NgoMIV	GCCGGC	1 cut(s)	281
NheI	GCTAGC	1 cut(s)	1132
NlaIII	CATG	7 cut(s)	201, 261, 275, 416, 736, 1001, 1323
NlaIV	GGNNCC	1 cut(s)	971
NmeAIII	GCCGAG	1 cut(s)	708
NmuCI	GTSAC	2 cut(s)	226, 274
NspI	RCATGY	1 cut(s)	736
PaeI	GCATGC	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	1314
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	1062
PdiI	GCCGGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	7 cut(s)	332, 612, 675, 781, 1120, 1268, 1296
PleI	GAGTC	3 cut(s)	223, 430, 904
PmaCI	CACGTG	1 cut(s)	1013
PmlI	CACGTG	1 cut(s)	1013
PpsI	GAGTC	3 cut(s)	223, 430, 904
Ppu21I	YACGTR	1 cut(s)	1013
Psp6I	CCWGG	2 cut(s)	1039, 1314
PspCI	CACGTG	1 cut(s)	1013
PspGI	CCWGG	2 cut(s)	1039, 1314
PspN4I	GGNNCC	1 cut(s)	971
PspPI	GGNCC	3 cut(s)	265, 970, 1323
PsrI	GAACNNNNNNTAC	2 cut(s)	974, 1006
PsuI	RGATCY	2 cut(s)	303, 323
RsaI	GTAC	2 cut(s)	926, 983
RsaNI	GTAC	2 cut(s)	925, 982
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	15, 663, 1031
Sau3AI	GATC	6 cut(s)	242, 303, 323, 1160, 1190, 1333
Sau96I	GGNCC	3 cut(s)	265, 970, 1323
SchI	GAGTC	3 cut(s)	223, 430, 904
ScrFI	CCNGG	2 cut(s)	1041, 1316
SfaNI	GCATC	2 cut(s)	643, 1158
SfcI	CTRYAG	1 cut(s)	1096
SinI	GGWCC	2 cut(s)	970, 1323
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	6 cut(s)	20, 419, 666, 720, 957, 1028
SseBI	AGGCCT	1 cut(s)	1314
SsiI	CCGC	5 cut(s)	186, 279, 408, 531, 1035
SspMI	CTAG	2 cut(s)	498, 1133
StuI	AGGCCT	1 cut(s)	1314
StyD4I	CCNGG	2 cut(s)	1039, 1314
StyI	CCWWGG	3 cut(s)	257, 327, 1143
TaaI	ACNGT	5 cut(s)	380, 598, 740, 821, 1248
TaiI	ACGT	4 cut(s)	816, 983, 1015, 1281
TaqI	TCGA	3 cut(s)	222, 232, 241
TasI	AATT	6 cut(s)	20, 419, 666, 720, 957, 1028
TfiI	GAWTC	7 cut(s)	332, 612, 675, 781, 1120, 1268, 1296
Tru1I	TTAA	3 cut(s)	15, 663, 1031
Tru9I	TTAA	3 cut(s)	15, 663, 1031
TscAI	CASTG	5 cut(s)	168, 385, 745, 805, 1134
TseFI	GTSAC	2 cut(s)	226, 274
Tsp45I	GTSAC	2 cut(s)	226, 274
TspDTI	ATGAA	4 cut(s)	204, 663, 694, 1014
TspGWI	ACGGA	2 cut(s)	112, 1315
TspRI	CASTG	5 cut(s)	168, 385, 745, 805, 1134
VpaK11BI	GGWCC	2 cut(s)	970, 1323
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	2 cut(s)	498, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.