Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

5919664 .. 5922685

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1052800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGAGCATAGCAGTGTGGCAAGGGGCAACACTCTGCGGGATTGTGTCATGGATGATAGTAGCTTCATATCTCGATGTGACTCGAAAGCTTCGATCTTTCCTGCAACCATGGGTGGCCCACCATGTCACCGCCGGCACTCCTCTCATCCTCCAGATCCAGAACTACCAGCATAGATCCTTGGATTCTTTCTTCTCTGCCTTGTCCTGTGTTGTTTCTGTGCCATTTTACACTGCTTTTCTTCCTTTGCTTTTTTGGACCGGTCATGGCAAATTGGCAAGGCAAATGACTCTGTTGATGGCTTTCTGTGATTATACGGGGAACTGCATAAAGGATGTGGTATCAGCTCCTAGACCTTGTTGTCCACCTGTTAGAAGAATAACCGCTACGAAAGATGAGGAAGATAATGCTTTGGAATATGGATTGCCATCTTCTCACGCTCTAAACACAGTATGCTTATCCGGATTCCTTTTGCATTACATCCTATCGTACAGTCAGAATGAAGATGCCCGTGTTAAAATTGCTGGATTCGCTCTTGTCTGCTTGCTTGTGGGTTTCATTGGTTTAGGAAGAATTTATCTCGGCATGCACAGTCCTATTGATGTCATAAGTGGGCTTGCTATTGGATTGGTGATTCTTTGGCTCTGGCTCAGTGTTTACAAATACGTTGACAGTTTTGTGGTCTCGGAACAAAATGTAACATCCTTTTGGGGCGGCCTAAGCTTGATACTGCTTTTTGCTTATCCAACTCCTGAGTTTCCGACTCCAAGTTTTGAGTACCACACAGCCTTCAATGGTGTTGCATTAGGAATTGTATCTGGGGTCCAGCAGACGTATCATCAGTTCCACCATGAAGCCGTTCCGCGTGTATTTACATCACAATTGACTGTCCCTGGGTTTACGGGAAGAGTGCTTGTGGGAATACCAACCATACTTATCGTGAAGTTCTGTAGCAAAGCTCTTGCTAAATGGATTCTTCCAGTGGTAGCCAACACCTTGGGCATCCCAATAAGATCAACCACTTACATCGCGTCACTAAAGGGATCAGGTGATGGCAAAAAATCAGATGGCTTGAAGCAATCAGGTTATGTCCAAAAACTGTTCTTTTTCTCCGGGCAAGAATCATTTGACGTTGATACTGGTATAAGATTCCTTCAATATGCAGGGCTGGCATGGTCCGTCGTTGATCTTGTTCCTTCCCTTTTCGCTCATCTACGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

408

Amino Acids

44.91

Weight (kDa)

8.5

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	96 - 222	4.1e-22	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	360
AccII	CGCG	2 cut(s)	865, 1031
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	5 cut(s)	39, 132, 384, 714, 863
AclWI	GGATC	3 cut(s)	151, 171, 1051
AcsI	RAATTY	1 cut(s)	573
AfaI	GTAC	2 cut(s)	491, 779
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	793, 1075, 1157
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	5 cut(s)	65, 91, 347, 723, 959
AluI	AGCT	5 cut(s)	65, 91, 347, 723, 959
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	151, 171, 1051
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	2 cut(s)	117, 715
ApoI	RAATTY	1 cut(s)	573
AsiGI	ACCGGT	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	4 cut(s)	118, 258, 823, 1176
AsuC2I	CCSGG	1 cut(s)	1114
AsuHPI	GGTGA	3 cut(s)	121, 643, 1061
AvaII	GGWCC	3 cut(s)	258, 823, 1176
BccI	CCATC	4 cut(s)	292, 436, 1046, 1061
BceAI	ACGGC	1 cut(s)	842
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	1114
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	949
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
Bme1390I	CCNGG	2 cut(s)	894, 1114
Bme18I	GGWCC	3 cut(s)	258, 823, 1176
BmgT120I	GGNCC	4 cut(s)	118, 258, 823, 1176
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	2 cut(s)	894, 1114
BmsI	GCATC	2 cut(s)	496, 1011
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	5 cut(s)	110, 180, 892, 893, 996
BsaWI	WCCGGW	2 cut(s)	260, 461
Bse118I	RCCGGY	2 cut(s)	134, 260
Bse1I	ACTGG	2 cut(s)	980, 1144
Bse8I	GATNNNNATC	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	5 cut(s)	110, 180, 892, 893, 996
BseGI	GGATG	6 cut(s)	60, 147, 340, 480, 701, 1002
BseJI	GATNNNNATC	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	664, 744
BseNI	ACTGG	2 cut(s)	980, 1144
BseRI	GAGGAG	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	865, 1031
BshFI	GGCC	2 cut(s)	119, 717
BshTI	ACCGGT	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	135, 261, 462, 1113
BslFI	GGGAC	1 cut(s)	875
BsmAI	GTCTC	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	2 cut(s)	119, 717
Bso31I	GGTCTC	1 cut(s)	688
Bsp13I	TCCGGA	1 cut(s)	461
Bsp143I	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	39, 132, 384, 714, 863
BspANI	GGCC	2 cut(s)	119, 717
BspCNI	CTCAG	2 cut(s)	663, 745
BspEI	TCCGGA	1 cut(s)	461
BspFNI	CGCG	2 cut(s)	865, 1031
BspLI	GGNNCC	1 cut(s)	824
BspPI	GGATC	3 cut(s)	151, 171, 1051
BspTNI	GGTCTC	1 cut(s)	688
BsrFI	RCCGGY	2 cut(s)	134, 260
BsrI	ACTGG	2 cut(s)	980, 1144
BssAI	RCCGGY	2 cut(s)	134, 260
BssECI	CCNNGG	5 cut(s)	110, 180, 892, 893, 996
BssMI	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
BssT1I	CCWWGG	3 cut(s)	110, 180, 996
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	6 cut(s)	451, 494, 593, 674, 889, 1101
Bst6I	CTCTTC	1 cut(s)	901
BstC8I	GCNNGC	5 cut(s)	136, 545, 587, 618, 1170
BstDEI	CTNAG	3 cut(s)	650, 719, 753
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	6 cut(s)	60, 147, 340, 480, 701, 1002
BstFNI	CGCG	2 cut(s)	865, 1031
BstKTI	GATC	6 cut(s)	98, 159, 179, 1016, 1046, 1189
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 720, 1169
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	892, 1112
BstSFI	CTRYAG	1 cut(s)	949
BstUI	CGCG	2 cut(s)	865, 1031
BstX2I	RGATCY	2 cut(s)	156, 176
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	2 cut(s)	156, 176
BsuRI	GGCC	2 cut(s)	119, 717
BtgI	CCRYGG	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	1012
BtsCI	GGATG	6 cut(s)	60, 147, 340, 480, 701, 1002
BtsI	GCAGTG	2 cut(s)	21, 231
BtsIMutI	CAGTG	4 cut(s)	21, 231, 658, 987
Cac8I	GCNNGC	5 cut(s)	136, 545, 587, 618, 1170
Cfr10I	RCCGGY	2 cut(s)	134, 260
Cfr13I	GGNCC	4 cut(s)	118, 258, 823, 1176
CseI	GACGC	1 cut(s)	1020
Csp6I	GTAC	2 cut(s)	490, 778
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	7 cut(s)	51, 111, 125, 266, 586, 851, 1173
CviQI	GTAC	2 cut(s)	490, 778
DdeI	CTNAG	3 cut(s)	650, 719, 753
DpnI	GATC	6 cut(s)	97, 158, 178, 1015, 1045, 1188
DpnII	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
DrdI	GACNNNNNNGTC	1 cut(s)	360
DseDI	GACNNNNNNGTC	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	901
EarI	CTCTTC	1 cut(s)	901
Eco130I	CCWWGG	3 cut(s)	110, 180, 996
Eco31I	GGTCTC	1 cut(s)	688
Eco47I	GGWCC	3 cut(s)	258, 823, 1176
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	3 cut(s)	110, 180, 996
ErhI	CCWWGG	3 cut(s)	110, 180, 996
FaeI	CATG	7 cut(s)	54, 114, 128, 269, 589, 854, 1176
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	7 cut(s)	50, 110, 124, 265, 585, 850, 1172
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	6 cut(s)	67, 134, 347, 467, 688, 989
Fsp4HI	GCNGC	1 cut(s)	715
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	119, 717
HapII	CCGG	4 cut(s)	135, 261, 462, 1113
HgaI	GACGC	1 cut(s)	1020
Hin1II	CATG	7 cut(s)	54, 114, 128, 269, 589, 854, 1176
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	2 cut(s)	89, 721
HpaII	CCGG	4 cut(s)	135, 261, 462, 1113
HphI	GGTGA	3 cut(s)	121, 643, 1061
Hpy166II	GTNNAC	4 cut(s)	365, 658, 670, 900
Hpy188I	TCNGA	4 cut(s)	498, 688, 762, 1066
Hpy188III	TCNNGA	6 cut(s)	74, 154, 160, 462, 752, 940
Hpy8I	GTNNAC	4 cut(s)	365, 658, 670, 900
Hpy99I	CGWCG	1 cut(s)	1184
HpyAV	CCTTC	3 cut(s)	799, 1163, 1206
HpyCH4III	ACNGT	6 cut(s)	451, 494, 593, 674, 889, 1101
HpyCH4IV	ACGT	3 cut(s)	666, 833, 1131
HpyCH4V	TGCA	6 cut(s)	106, 327, 475, 589, 803, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 720, 1169
HpyF3I	CTNAG	3 cut(s)	650, 719, 753
HpySE526I	ACGT	3 cut(s)	666, 833, 1131
Hsp92II	CATG	7 cut(s)	54, 114, 128, 269, 589, 854, 1176
Kpn2I	TCCGGA	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
LmnI	GCTCC	1 cut(s)	352
LweI	GCATC	2 cut(s)	496, 1011
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	666, 833, 1131
MaeIII	GTNAC	4 cut(s)	79, 127, 697, 1032
MalI	GATC	6 cut(s)	97, 158, 178, 1015, 1045, 1188
MboI	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
MboII	GAAGA	9 cut(s)	184, 233, 387, 413, 423, 515, 582, 918, 968
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	2 cut(s)	156, 176
MluCI	AATT	5 cut(s)	272, 519, 573, 810, 881
MlyI	GAGTC	3 cut(s)	76, 283, 757
MmeI	TCCRAC	2 cut(s)	770, 785
MnlI	CCTC	3 cut(s)	153, 161, 391
MroI	TCCGGA	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	4 cut(s)	135, 261, 462, 1113
MspR9I	CCNGG	2 cut(s)	894, 1114
MunI	CAATTG	1 cut(s)	881
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	2 cut(s)	865, 1031
MwoI	GCNNNNNNNGC	3 cut(s)	530, 720, 1169
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	1114
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	7 cut(s)	54, 114, 128, 269, 589, 854, 1176
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	561
NmuCI	GTSAC	3 cut(s)	79, 127, 1032
NspI	RCATGY	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	589
PasI	CCCWGGG	1 cut(s)	893
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	7 cut(s)	185, 465, 528, 634, 973, 1121, 1149
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	716
PleI	GAGTC	3 cut(s)	76, 283, 757
PpsI	GAGTC	3 cut(s)	76, 283, 757
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	4 cut(s)	118, 258, 823, 1176
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PsuI	RGATCY	2 cut(s)	156, 176
RsaI	GTAC	2 cut(s)	491, 779
RsaNI	GTAC	2 cut(s)	490, 778
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	715
Sau3AI	GATC	6 cut(s)	95, 156, 176, 1013, 1043, 1186
Sau96I	GGNCC	4 cut(s)	118, 258, 823, 1176
SchI	GAGTC	3 cut(s)	76, 283, 757
ScrFI	CCNGG	2 cut(s)	894, 1114
SfaNI	GCATC	2 cut(s)	496, 1011
SfcI	CTRYAG	1 cut(s)	949
SinI	GGWCC	3 cut(s)	258, 823, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	5 cut(s)	272, 519, 573, 810, 881
SsiI	CCGC	5 cut(s)	39, 132, 384, 714, 863
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	892, 1112
StyI	CCWWGG	3 cut(s)	110, 180, 996
TaaI	ACNGT	6 cut(s)	451, 494, 593, 674, 889, 1101
TaiI	ACGT	3 cut(s)	669, 836, 1134
TaqI	TCGA	3 cut(s)	75, 85, 94
TasI	AATT	5 cut(s)	272, 519, 573, 810, 881
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	7 cut(s)	185, 465, 528, 634, 973, 1121, 1149
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	21, 238, 658, 987
TseFI	GTSAC	3 cut(s)	79, 127, 1032
Tsp45I	GTSAC	3 cut(s)	79, 127, 1032
TspDTI	ATGAA	4 cut(s)	57, 516, 547, 867
TspGWI	ACGGA	1 cut(s)	1168
TspRI	CASTG	4 cut(s)	21, 238, 658, 987
VpaK11BI	GGWCC	3 cut(s)	258, 823, 1176
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.