Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011331

Physical Location & Seq

Genomic Coordinates Forward (+)

14111930 .. 14113011

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAGGCAAGTGCCCGCACAGAAGCGTTAAGAAGAGAAGATACTCCCACAAGACTCATCGCCGCAGCAAGTTCCTCGTCAAAGGCGACGATTTGGTGTACGATGGGCTCAAGAAAGCAGAGGATCAGATGACCACGCCGGTTTTGCCCGTCGATGAAGATCTACCTGGAATGGGCCAATACTACTGTCTTCACTGCGACCGATATTTTGCTAATGTGACTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGAGCAAAGCAACTGATGGAAGCACCGCACACCCAACTGGATGCTGATTTAGCTGCTGGGATGGGTATGCCAGATAACGGCCCTAAGCTTATGTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

120

Amino Acids

13.83

Weight (kDa)

9.54

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	60 - 86	4.8e-09	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58490 AT3G58490
fragaria_vesca	FvH4_6g21550 FvH4_6g21550
malus_domestica	MD12G1052800.v1.1 MD14G1051200.v1.1
prunus_persica	Prupe.7G084800_v2.0.a1
pyrus_communis	pycom12g04610 pycom14g04240
rosa_chinensis	RchiOBHm_Chr3g0478791
rosa_laevigata	RLG00000023625
rosa_multiflora	Rmu_sc0001519.1_g000004 Rmu_sc0005751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403070
rosa_rugosa	Rorug03G0168200
rosa_samantha	Rh3AG220000 Rh3BG251800 Rh3CG248700 Rh3DG244900
rosa_wichuraiana	Rw3G019770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	17, 64, 287
AclWI	GGATC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	173, 338
AgsI	TTSAA	1 cut(s)	241
AhdI	GACNNNNNGTC	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	314, 349
AluI	AGCT	2 cut(s)	314, 349
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	175, 340
ApeKI	GCWGC	2 cut(s)	66, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	2 cut(s)	175, 341
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	78, 301
BccI	CCATC	3 cut(s)	98, 271, 316
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	3 cut(s)	64, 67, 315
BlsI	GCNGC	3 cut(s)	65, 68, 316
Bme1390I	CCNGG	1 cut(s)	168
BmeRI	GACNNNNNGTC	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	175, 341
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 338
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	235, 307, 327
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	173, 338
BseNI	ACTGG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	78, 301
BseYI	CCCAGC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	177, 342
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	173, 338
BsnI	GGCC	2 cut(s)	177, 342
Bsp1286I	GDGCHC	2 cut(s)	17, 111
Bsp143I	GATC	2 cut(s)	124, 160
BspACI	CCGC	3 cut(s)	17, 64, 287
BspANI	GGCC	2 cut(s)	177, 342
BspPI	GGATC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	139
BssMI	GATC	2 cut(s)	124, 160
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	188, 223
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	17, 264
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	235, 307, 327
BstKTI	GATC	2 cut(s)	127, 163
BstMBI	GATC	2 cut(s)	124, 160
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 268, 311
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	78, 301
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	177, 342
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	235, 307, 327
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	17, 264
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	175, 341
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	5 cut(s)	109, 177, 314, 342, 349
CviKI_1	RGCY	5 cut(s)	109, 177, 314, 342, 349
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	126, 162
DpnII	GATC	2 cut(s)	124, 160
DriI	GACNNNNNGTC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	29
Eam1105I	GACNNNNNGTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	2 cut(s)	329, 353
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	64, 67, 315
FokI	GGATG	3 cut(s)	242, 314, 334
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	64, 67, 315
GluI	GCNGC	3 cut(s)	64, 67, 315
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	177, 342
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	129, 362
Hpy188III	TCNNGA	2 cut(s)	112, 241
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	92, 155
HpyCH4III	ACNGT	2 cut(s)	188, 223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 268, 311
HpyF3I	CTNAG	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	124, 160
LpnPI	CCDG	7 cut(s)	153, 153, 180, 241, 284, 303, 345
Lsp1109I	GCAGC	2 cut(s)	78, 301
LweI	GCATC	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	217, 251
MalI	GATC	2 cut(s)	126, 162
MboI	GATC	2 cut(s)	124, 160
MboII	GAAGA	4 cut(s)	46, 51, 170, 182
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	17, 111
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	86, 115, 219
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	145, 268, 311
NdeII	GATC	2 cut(s)	124, 160
NmuCI	GTSAC	2 cut(s)	217, 251
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	65, 68, 316
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	175, 341
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	64, 67, 315
Sau3AI	GATC	2 cut(s)	124, 160
Sau96I	GGNCC	2 cut(s)	175, 341
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	17, 111
SetI	ASST	3 cut(s)	169, 316, 351
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	17, 64, 287
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	188, 223
TaqI	TCGA	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	216
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	217, 251
TseI	GCWGC	2 cut(s)	66, 314
Tsp45I	GTSAC	2 cut(s)	217, 251
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.