AT3G58800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011409
Physical Location & Seq
Forward (+)
21748228 .. 21749928
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58800.1

Sequence Viewer

Length: 1035 bp
ATGTTGAAGCGTACTGACAAATGGAAATCTTCGCATGGATCTCGAATCCATCAATTCGGACTTGTTTTCGTTGTTGGGATCTTCCTGGTGGTGGTTCTGTTATTTTGTTTCAGTGGCAAGAATCAGAGCACGAAAATGCAACTACCGAAACAGATCTCTAACAATGTCAAGCCCGAATTGCAATCTCAGCCAACATTAGAGATTCAGAACGAGACTCAATTGATATGGACGATACCAAATTCACCAAAAGCAGTTCTGTTTATAGCTCATGGTTGCCACAGGAAAGCTTCAGACTTTTGGGACAAATCTTCAGATTGTCCTCAATGTACTGGCCTACCAGAGGAGAGGATTCTTATGCGATTTGCCCTAGCTCGAAAGTTTGCTGTTTTAACTGTATCTAGCACTGGAACATGCTGGACATTTGGGAAGGAAAAAACGATTGTTGGAAGTATAATAAAATCGTGGGTCGAGAAGCATAAGCTCGAAAGACTTCCGCTTGTTGCGTTAGGGGCTTCATCTGGTGGCTACTTTGTCTCGGCTCTTGCAACAGAAATGCAGTTTAGTAGCATTGTGCTTATGATTGCTGAAGGAGTCTTTGATCAAATTAGTATCAGTAAACAGTATCCGCCTACTCTGTTTGTGCACATGCCTAAAGATGTGTATAGACAACAAAAGATTAGAGAGTTCTTAGAAGGTCTTAGAATGGAAGGTATTGATGCTGCAGAGATTGAATGCTTGGATTTGCCGATTTCTCCGGATTTCTTGGCAGATAGGATTCCAGGTCTTGATTCAGATGTCTCGGCCAAACTATTTAAGTTGTTTCGAGACAAGGGATTTGTTGATGAGAAGGGATACATGAAACGTGATGGACGGAGAACACCGTGGAAACAAGCTCTTAGTGGCTACAAAATATCACTGGAGCAAAGTTTGATTACTCCTGTTGAGGAAGAACTGAATCTTGCATATGCATATCATGAGATGACGAGCTTGCAGTCTGATCAAATATTCAGCTGGTTTGAATCGCATATGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

39.04

Weight (kDa)

8.41

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 2 cut(s) 494, 626
AclWI GGATC 2 cut(s) 46, 86
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 3 cut(s) 273, 294, 606
AfaI GTAC 2 cut(s) 13, 328
AfiI CCNNNNNNNGG 2 cut(s) 91, 340
AgsI TTSAA 3 cut(s) 7, 731, 1019
AjnI CCWGG 2 cut(s) 84, 778
AluBI AGCT 8 cut(s) 266, 287, 371, 481, 893, 987, 1011, 1032
AluI AGCT 8 cut(s) 266, 287, 371, 481, 893, 987, 1011, 1032
Alw21I GWGCWC 2 cut(s) 131, 645
Alw26I GTCTC 4 cut(s) 206, 538, 802, 819
Alw44I GTGCAC 1 cut(s) 641
AlwI GGATC 2 cut(s) 46, 86
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 2 cut(s) 331, 801
ApaLI GTGCAC 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 1 cut(s) 238
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
Asp700I GAANNNNTTC 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 131, 645
BbvI GCAGC 1 cut(s) 706
BccI CCATC 2 cut(s) 57, 860
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 2 cut(s) 86, 780
BciVI GTATCC 2 cut(s) 633, 845
BclI TGATCA 2 cut(s) 598, 997
BcoDI GTCTC 4 cut(s) 206, 538, 802, 819
BfaI CTAG 2 cut(s) 368, 399
BfmI CTRYAG 1 cut(s) 720
BfuI GTATCC 2 cut(s) 633, 845
BglII AGATCT 1 cut(s) 153
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme1390I CCNGG 2 cut(s) 86, 780
BmrFI CCNGG 2 cut(s) 86, 780
BmsI GCATC 1 cut(s) 706
BpmI CTGGAG 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 881
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 340
Bse1I ACTGG 3 cut(s) 334, 409, 921
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 2 cut(s) 86, 780
BseDI CCNNGG 1 cut(s) 881
BseLI CCNNNNNNNGG 2 cut(s) 91, 340
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 334, 409, 921
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 1 cut(s) 706
BshFI GGCC 2 cut(s) 333, 803
BsiHKAI GWGCWC 2 cut(s) 131, 645
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 91, 340
BsmAI GTCTC 4 cut(s) 206, 538, 802, 819
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 2 cut(s) 333, 803
Bsp1286I GDGCHC 2 cut(s) 131, 645
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 5 cut(s) 38, 78, 153, 598, 997
BspACI CCGC 2 cut(s) 494, 626
BspANI GGCC 2 cut(s) 333, 803
BspCNI CTCAG 1 cut(s) 199
BspEI TCCGGA 1 cut(s) 754
BspHI TCATGA 1 cut(s) 973
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 2 cut(s) 46, 86
BsrI ACTGG 3 cut(s) 334, 409, 921
BssECI CCNNGG 1 cut(s) 881
BssMI GATC 5 cut(s) 38, 78, 153, 598, 997
Bst2UI CCWGG 2 cut(s) 86, 780
Bst4CI ACNGT 3 cut(s) 394, 621, 882
BstC8I GCNNGC 1 cut(s) 989
BstDEI CTNAG 4 cut(s) 186, 688, 698, 896
BstDSI CCRYGG 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 338
BstKTI GATC 5 cut(s) 41, 81, 156, 601, 1000
BstMAI GTCTC 4 cut(s) 206, 538, 802, 819
BstMBI GATC 5 cut(s) 38, 78, 153, 598, 997
BstMWI GCNNNNNNNGC 3 cut(s) 178, 187, 509
BstNI CCWGG 2 cut(s) 86, 780
BstNSI RCATGY 2 cut(s) 414, 649
BstSCI CCNGG 2 cut(s) 84, 778
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 706
BstX2I RGATCY 3 cut(s) 38, 78, 153
BstYI RGATCY 3 cut(s) 38, 78, 153
BsuI GTATCC 2 cut(s) 633, 845
BsuRI GGCC 2 cut(s) 333, 803
BtgI CCRYGG 1 cut(s) 881
BtsIMutI CAGTG 3 cut(s) 118, 402, 914
Cac8I GCNNGC 1 cut(s) 989
CciI TCATGA 1 cut(s) 973
Csp6I GTAC 2 cut(s) 12, 327
CviAII CATG 6 cut(s) 35, 269, 411, 646, 856, 974
CviQI GTAC 2 cut(s) 12, 327
DdeI CTNAG 4 cut(s) 186, 688, 698, 896
DpnI GATC 5 cut(s) 40, 80, 155, 600, 999
DpnII GATC 5 cut(s) 38, 78, 153, 598, 997
EaeI YGGCCR 1 cut(s) 801
EciI GGCGGA 1 cut(s) 615
Eco57I CTGAAG 3 cut(s) 273, 294, 606
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 84, 778
EcoT22I ATGCAT 1 cut(s) 970
FaeI CATG 6 cut(s) 38, 272, 414, 649, 859, 977
FaqI GGGAC 1 cut(s) 314
FatI CATG 6 cut(s) 34, 268, 410, 645, 855, 973
FauNDI CATATG 2 cut(s) 964, 1026
FbaI TGATCA 2 cut(s) 598, 997
Fnu4HI GCNGC 1 cut(s) 720
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 2 cut(s) 368, 399
GluI GCNGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 2 cut(s) 333, 803
HapII CCGG 1 cut(s) 755
Hin1II CATG 6 cut(s) 38, 272, 414, 649, 859, 977
HindIII AAGCTT 1 cut(s) 285
HpaII CCGG 1 cut(s) 755
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 617, 643
Hpy188I TCNGA 7 cut(s) 59, 126, 207, 292, 313, 793, 997
Hpy188III TCNNGA 6 cut(s) 42, 469, 755, 785, 824, 974
Hpy8I GTNNAC 2 cut(s) 617, 643
HpyAV CCTTC 5 cut(s) 421, 581, 686, 701, 841
HpyCH4III ACNGT 3 cut(s) 394, 621, 882
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 9 cut(s) 139, 181, 545, 556, 643, 722, 962, 968, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 187, 509
HpyF3I CTNAG 4 cut(s) 186, 688, 698, 896
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 6 cut(s) 38, 272, 414, 649, 859, 977
Kpn2I TCCGGA 1 cut(s) 754
Ksp22I TGATCA 2 cut(s) 598, 997
Kzo9I GATC 5 cut(s) 38, 78, 153, 598, 997
LmnI GCTCC 1 cut(s) 919
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 1 cut(s) 706
MaeI CTAG 2 cut(s) 368, 399
MaeII ACGT 1 cut(s) 862
MalI GATC 5 cut(s) 40, 80, 155, 600, 999
MboI GATC 5 cut(s) 38, 78, 153, 598, 997
MboII GAAGA 4 cut(s) 21, 73, 300, 959
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 3 cut(s) 38, 78, 153
MhlI GDGCHC 2 cut(s) 131, 645
MluCI AATT 5 cut(s) 53, 176, 218, 238, 603
MlyI GAGTC 2 cut(s) 208, 600
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 4 cut(s) 330, 334, 339, 937
Mph1103I ATGCAT 1 cut(s) 970
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 2 cut(s) 389, 813
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 1011
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 86, 780
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 2 cut(s) 86, 780
MwoI GCNNNNNNNGC 3 cut(s) 178, 187, 509
NdeI CATATG 2 cut(s) 964, 1026
NdeII GATC 5 cut(s) 38, 78, 153, 598, 997
NlaIII CATG 6 cut(s) 38, 272, 414, 649, 859, 977
NmeAIII GCCGAG 2 cut(s) 515, 779
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 2 cut(s) 414, 649
PagI TCATGA 1 cut(s) 973
PctI GAATGC 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 8 cut(s) 45, 121, 202, 349, 775, 788, 955, 1019
PkrI GCNGC 1 cut(s) 721
PleI GAGTC 2 cut(s) 208, 599
PpsI GAGTC 2 cut(s) 208, 599
Psp6I CCWGG 2 cut(s) 84, 778
PspGI CCWGG 2 cut(s) 84, 778
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 3 cut(s) 38, 78, 153
PvuII CAGCTG 1 cut(s) 1011
RsaI GTAC 2 cut(s) 13, 328
RsaNI GTAC 2 cut(s) 12, 327
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 389, 813
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 5 cut(s) 38, 78, 153, 598, 997
SchI GAGTC 2 cut(s) 208, 600
ScrFI CCNGG 2 cut(s) 86, 780
SduI GDGCHC 2 cut(s) 131, 645
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 5 cut(s) 53, 176, 218, 238, 603
SsiI CCGC 2 cut(s) 494, 626
SspI AATATT 1 cut(s) 1005
SspMI CTAG 2 cut(s) 368, 399
StyD4I CCNGG 2 cut(s) 84, 778
TaaI ACNGT 3 cut(s) 394, 621, 882
TaiI ACGT 1 cut(s) 865
TaqI TCGA 5 cut(s) 43, 373, 468, 483, 823
TasI AATT 5 cut(s) 53, 176, 218, 238, 603
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 8 cut(s) 45, 121, 202, 349, 775, 788, 955, 1019
Tru1I TTAA 2 cut(s) 389, 813
Tru9I TTAA 2 cut(s) 389, 813
TscAI CASTG 3 cut(s) 118, 409, 921
TseI GCWGC 1 cut(s) 719
TspDTI ATGAA 2 cut(s) 504, 872
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 3 cut(s) 118, 409, 921
VneI GTGCAC 1 cut(s) 641
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 238
XceI RCATGY 2 cut(s) 414, 649
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 368, 399
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.