Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011409

Physical Location & Seq

Genomic Coordinates Forward (+)

66062979 .. 66065943

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTGGAAGCGTGGAAACAAATCGAAGGCACATAATGGGCCTCAGAACCGTTTCGTTGCATTTCTGGTTGTGTCTGTGACATTACTTACTCTTGTTTTCATAGTGTTGTTTCACAACACTGATCAAAAGCCAAGTTCAGTACTGGGACTTCGGATGGAAAAGTGGAATAGCTTTGAGTCATTGATGCAACTATCTCCGACCGTAGATTTCCGGAATGGAACAGATGTAATATGGCAAATACCAGATTCACCTAAAGCAGTCCTCTTTCTGGCTCATGGTTGTGATGGTAGAGCTGCTAACTTTTGGGACAAGTCCTCTACCTGCCCCAACTGCATTGGTTTGCCAGAAGAAAGACTAATTGCTCTTCACGCTCTTGCTCGAAAGTTTGCTGTTCTTACCATATCAAGTAAAGAGAGATGCTGGACTTTCGGGAAGGAAATAGTTATTGTTAAGGATATTATAACATGGTGGGTTAAGAGAAACAAGCTTGAAAAACTTCCTCTTGTGGCTTTGGGTGCCTCTTCTGGGGGATACTTTGTCTCTGTGCTTGCCACTGAGTTGAAGTTCAGTAGTATTACACTTATGATTGCTGAAGGGATGTTTGATCATATAGATATAAAGGAGAACTATCCGCCTACCCTATTTGTGCACATGCCTAAAGATCTATTTAGGCAGAAAAAGATAGCTGAGTATATGGAAGTTTTGAAAAATAATGGTGTTGATGTTGAAGAGATCGAGTGCATGGAGTTTCCCTTGTCACCACATATCTTAGCCAATAGAATCCCAGGTCTTGATCATTCTGTTTCTACTAAGCTCTATGATCTCTTCCGCCATGAGGGGTTTATTGATGAGAATGGATATATGAAGAATGATGGCCGCAGAACACATTGGAAAGAGGCTGTGAGAAAGAGTAATATCATTTTTCCAGACAAGCAGCTAGCCCATTACATTCAGGAGGAGTTAAATCTTGCATTCGCGGTCCATGAAATGACAAGCTTACACTCTGACAGGATCTTCAAATGGTTTGAATCTCACATGAGCGTTGTTCTCTCCTATCACCTTCCAACACCTGAAGCTAGGTTTTCTCCTTATCCCTGCCTTCAGGCATCTTGGAGCTCTGGCCTTAGACAAGAGAGGTGGAGCGAGGAGAGCCAAGGGAGGCAACGACGGAGGCCACGGTCTCCGGGGTTGGCTGGGTGGGGTAGGTTGCTGCGGTGTCCGGTGAGGAGGGTGAGAAGAAAGACAGCGGAGAGAGACAAGTGGGAAGCCATGGATTTGGGGAATCGGATTATAACGAATCCGATTGGGTTCGTTCGTTCATTGAACTTGGCCTGCGACAAGTCAAGGCCAGCCACCACATCTTCCGGAGACACTCGGAATAGTGCTCAAGCACCATTGCCGCCGTCGGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

53.85

Weight (kDa)

9.39

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58800
fragaria_vesca	FvH4_6g38090
malus_domestica	MD09G1154100.v1.1 MD17G1140700.v1.1
prunus_persica	Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1
pyrus_communis	pycom09g07320
rosa_chinensis	RchiOBHm_Chr2g0151151
rosa_laevigata	RLG00000020536
rosa_multiflora	Rmu_sc0008346.1_g000001 Rmu_sc0013838.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096700
rosa_rugosa	Rorug02G0425300
rosa_samantha	Rh2AG485700 Rh2BG497600 Rh2CG471500 Rh2DG508600
rosa_wichuraiana	Rw2G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	461, 1292
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	515
AccII	CGCG	1 cut(s)	977
AccIII	TCCGGA	2 cut(s)	210, 1364
AciI	CCGC	7 cut(s)	632, 829, 877, 977, 1213, 1247, 1400
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	1 cut(s)	874
AcuI	CTGAAG	3 cut(s)	612, 1085, 1092
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
AgsI	TTSAA	7 cut(s)	491, 562, 706, 728, 1018, 1028, 1324
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	9 cut(s)	171, 293, 487, 686, 814, 937, 996, 1076, 1116
AluI	AGCT	9 cut(s)	171, 293, 487, 686, 814, 937, 996, 1076, 1116
Alw21I	GWGCWC	3 cut(s)	651, 1118, 1387
Alw26I	GTCTC	4 cut(s)	544, 1185, 1248, 1362
Alw44I	GTGCAC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	1019
Aor13HI	TCCGGA	2 cut(s)	210, 1364
AoxI	GGCC	6 cut(s)	38, 874, 1120, 1172, 1329, 1346
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	293, 934, 1210
Asp700I	GAANNNNTTC	2 cut(s)	50, 495
AspS9I	GGNCC	2 cut(s)	38, 979
AsuC2I	CCSGG	1 cut(s)	1185
AsuHPI	GGTGA	5 cut(s)	240, 750, 1049, 1234, 1243
AsuNHI	GCTAGC	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	979
BaeGI	GKGCMC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	1118
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
Bbv12I	GWGCWC	3 cut(s)	651, 1118, 1387
BbvI	GCAGC	3 cut(s)	280, 946, 1197
BccI	CCATC	3 cut(s)	148, 278, 866
BceAI	ACGGC	1 cut(s)	1387
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	3 cut(s)	121, 604, 793
BcnI	CCSGG	1 cut(s)	1185
BcoDI	GTCTC	4 cut(s)	544, 1185, 1248, 1362
BfaI	CTAG	2 cut(s)	938, 1077
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	5 cut(s)	294, 877, 935, 1211, 1400
BlsI	GCNGC	5 cut(s)	295, 878, 936, 1212, 1401
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	786, 1185
Bme18I	GGWCC	1 cut(s)	979
BmgT120I	GGNCC	2 cut(s)	38, 979
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	786, 1185
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	3 cut(s)	174, 407, 1115
BmtI	GCTAGC	1 cut(s)	941
BmuI	ACTGGG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	1371
BpuMI	CCSGG	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	1185
BsaJI	CCNNGG	5 cut(s)	784, 1153, 1175, 1184, 1269
BsaWI	WCCGGW	3 cut(s)	210, 1219, 1364
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 525, 835
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	1394
BseAI	TCCGGA	2 cut(s)	210, 1364
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	5 cut(s)	784, 1153, 1175, 1184, 1269
BseGI	GGATG	2 cut(s)	159, 603
BseLI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BseMI	GCAATG	1 cut(s)	1394
BseMII	CTCAG	3 cut(s)	56, 546, 678
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	3 cut(s)	971, 1160, 1240
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	280, 946, 1197
BseYI	CCCAGC	1 cut(s)	1193
Bsh1236I	CGCG	1 cut(s)	977
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	6 cut(s)	40, 876, 1122, 1174, 1331, 1348
BshNI	GGYRCC	1 cut(s)	515
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	3 cut(s)	651, 1118, 1387
BsiSI	CCGG	4 cut(s)	211, 1184, 1220, 1365
BslFI	GGGAC	2 cut(s)	159, 320
BslI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BsmAI	GTCTC	4 cut(s)	544, 1185, 1248, 1362
BsmFI	GGGAC	2 cut(s)	159, 320
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	6 cut(s)	40, 876, 1122, 1174, 1331, 1348
Bso31I	GGTCTC	1 cut(s)	1185
Bsp1286I	GDGCHC	3 cut(s)	651, 1118, 1387
Bsp13I	TCCGGA	2 cut(s)	210, 1364
Bsp143I	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
Bsp19I	CCATGG	1 cut(s)	1269
BspACI	CCGC	7 cut(s)	632, 829, 877, 977, 1213, 1247, 1400
BspANI	GGCC	6 cut(s)	40, 876, 1122, 1174, 1331, 1348
BspCNI	CTCAG	3 cut(s)	55, 547, 679
BspEI	TCCGGA	2 cut(s)	210, 1364
BspFNI	CGCG	1 cut(s)	977
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	329
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	1 cut(s)	1019
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	1394
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	5 cut(s)	784, 1153, 1175, 1184, 1269
BssMI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
BssT1I	CCWWGG	2 cut(s)	1153, 1269
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	50, 202, 1179
Bst6I	CTCTTC	4 cut(s)	369, 526, 723, 830
BstC8I	GCNNGC	4 cut(s)	549, 939, 1333, 1350
BstDEI	CTNAG	6 cut(s)	42, 555, 687, 769, 810, 1124
BstDSI	CCRYGG	2 cut(s)	1175, 1269
BstF5I	GGATG	2 cut(s)	159, 603
BstFNI	CGCG	1 cut(s)	977
BstKTI	GATC	7 cut(s)	124, 607, 664, 735, 796, 823, 1014
BstMAI	GTCTC	4 cut(s)	544, 1185, 1248, 1362
BstMBI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 368, 515, 1149
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	784, 1183
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	977
BstV1I	GCAGC	3 cut(s)	280, 946, 1197
BstX2I	RGATCY	2 cut(s)	661, 1011
BstXI	CCANNNNNNTGG	1 cut(s)	1276
BstYI	RGATCY	2 cut(s)	661, 1011
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	6 cut(s)	40, 876, 1122, 1174, 1331, 1348
BtgI	CCRYGG	2 cut(s)	1175, 1269
BtsCI	GGATG	2 cut(s)	159, 603
BtsIMutI	CAGTG	2 cut(s)	117, 552
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	549, 939, 1333, 1350
Cfr13I	GGNCC	2 cut(s)	38, 979
Csp6I	GTAC	1 cut(s)	140
CspCI	CAANNNNNGTGG	2 cut(s)	1118, 1153
CviAII	CATG	8 cut(s)	275, 465, 652, 742, 833, 983, 1036, 1270
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	6 cut(s)	42, 555, 687, 769, 810, 1124
DpnI	GATC	7 cut(s)	123, 606, 663, 734, 795, 822, 1013
DpnII	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	4 cut(s)	369, 526, 723, 830
EarI	CTCTTC	4 cut(s)	369, 526, 723, 830
EciI	GGCGGA	2 cut(s)	621, 818
Ecl136II	GAGCTC	1 cut(s)	1116
Eco130I	CCWWGG	2 cut(s)	1153, 1269
Eco24I	GRGCYC	1 cut(s)	1118
Eco31I	GGTCTC	1 cut(s)	1185
Eco47I	GGWCC	1 cut(s)	979
Eco53kI	GAGCTC	1 cut(s)	1116
Eco57I	CTGAAG	3 cut(s)	612, 1085, 1092
EcoICRI	GAGCTC	1 cut(s)	1116
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	2 cut(s)	1153, 1269
EcoT38I	GRGCYC	1 cut(s)	1118
ErhI	CCWWGG	2 cut(s)	1153, 1269
FaeI	CATG	8 cut(s)	278, 468, 655, 745, 836, 986, 1039, 1273
FaqI	GGGAC	2 cut(s)	159, 320
FatI	CATG	8 cut(s)	274, 464, 651, 741, 832, 982, 1035, 1269
FbaI	TGATCA	3 cut(s)	121, 604, 793
Fnu4HI	GCNGC	5 cut(s)	294, 877, 935, 1211, 1400
FokI	GGATG	2 cut(s)	166, 610
FriOI	GRGCYC	1 cut(s)	1118
Fsp4HI	GCNGC	5 cut(s)	294, 877, 935, 1211, 1400
FspBI	CTAG	2 cut(s)	938, 1077
GluI	GCNGC	5 cut(s)	294, 877, 935, 1211, 1400
GsaI	CCCAGC	1 cut(s)	1197
HaeIII	GGCC	6 cut(s)	40, 876, 1122, 1174, 1331, 1348
HapII	CCGG	4 cut(s)	211, 1184, 1220, 1365
Hin1II	CATG	8 cut(s)	278, 468, 655, 745, 836, 986, 1039, 1273
HindIII	AAGCTT	2 cut(s)	485, 994
HinfI	GANTC	6 cut(s)	176, 245, 780, 1028, 1282, 1297
HpaII	CCGG	4 cut(s)	211, 1184, 1220, 1365
HphI	GGTGA	5 cut(s)	240, 750, 1049, 1234, 1243
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	7 cut(s)	45, 153, 198, 1006, 1287, 1302, 1377
Hpy188III	TCNNGA	6 cut(s)	211, 430, 791, 926, 953, 1365
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	2 cut(s)	1170, 1408
HpyAV	CCTTC	5 cut(s)	19, 427, 587, 1070, 1109
HpyCH4III	ACNGT	3 cut(s)	50, 202, 1179
HpyCH4V	TGCA	6 cut(s)	59, 187, 333, 649, 741, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 368, 515, 1149
HpyF3I	CTNAG	6 cut(s)	42, 555, 687, 769, 810, 1124
Hsp92II	CATG	8 cut(s)	278, 468, 655, 745, 836, 986, 1039, 1273
Kpn2I	TCCGGA	2 cut(s)	210, 1364
Ksp22I	TGATCA	3 cut(s)	121, 604, 793
Kzo9I	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	1113, 1140
Lsp1109I	GCAGC	3 cut(s)	280, 946, 1197
LweI	GCATC	3 cut(s)	174, 407, 1115
MaeI	CTAG	2 cut(s)	938, 1077
MaeIII	GTNAC	2 cut(s)	76, 756
MalI	GATC	7 cut(s)	123, 606, 663, 734, 795, 822, 1013
MboI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
MboII	GAAGA	9 cut(s)	356, 359, 513, 740, 817, 877, 1006, 1248, 1353
MflI	RGATCY	2 cut(s)	661, 1011
MhlI	GDGCHC	3 cut(s)	651, 1118, 1387
MluCI	AATT	2 cut(s)	357, 1411
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	221, 1088
MroI	TCCGGA	2 cut(s)	210, 1364
MroXI	GAANNNNTTC	2 cut(s)	50, 495
MseI	TTAA	3 cut(s)	450, 474, 962
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	1247
MspI	CCGG	4 cut(s)	211, 1184, 1220, 1365
MspR9I	CCNGG	2 cut(s)	786, 1185
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	977
MwoI	GCNNNNNNNGC	4 cut(s)	330, 368, 515, 1149
NciI	CCSGG	1 cut(s)	1185
NcoI	CCATGG	1 cut(s)	1269
NdeII	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	8 cut(s)	278, 468, 655, 745, 836, 986, 1039, 1273
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	76, 756
NspI	RCATGY	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	971
PdmI	GAANNNNTTC	2 cut(s)	50, 495
PfeI	GAWTC	5 cut(s)	245, 780, 1028, 1282, 1297
PkrI	GCNGC	5 cut(s)	295, 878, 936, 1212, 1401
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PsiI	TTATAA	2 cut(s)	461, 1292
Psp124BI	GAGCTC	1 cut(s)	1118
Psp6I	CCWGG	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	1193
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	38, 979
PsuI	RGATCY	2 cut(s)	661, 1011
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	1118
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	450, 474, 962
SatI	GCNGC	5 cut(s)	294, 877, 935, 1211, 1400
Sau3AI	GATC	7 cut(s)	121, 604, 661, 732, 793, 820, 1011
Sau96I	GGNCC	2 cut(s)	38, 979
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	786, 1185
SduI	GDGCHC	3 cut(s)	651, 1118, 1387
SfaNI	GCATC	3 cut(s)	174, 407, 1115
SinI	GGWCC	1 cut(s)	979
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	1386
SmoI	CTYRAG	1 cut(s)	1386
Sse9I	AATT	2 cut(s)	357, 1411
SsiI	CCGC	7 cut(s)	632, 829, 877, 977, 1213, 1247, 1400
SspMI	CTAG	2 cut(s)	938, 1077
SstI	GAGCTC	1 cut(s)	1118
StyD4I	CCNGG	2 cut(s)	784, 1183
StyI	CCWWGG	2 cut(s)	1153, 1269
TaaI	ACNGT	3 cut(s)	50, 202, 1179
TaqI	TCGA	3 cut(s)	23, 379, 735
TasI	AATT	2 cut(s)	357, 1411
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	2 cut(s)	879, 1402
TfiI	GAWTC	5 cut(s)	245, 780, 1028, 1282, 1297
Tru1I	TTAA	3 cut(s)	450, 474, 962
Tru9I	TTAA	3 cut(s)	450, 474, 962
TscAI	CASTG	2 cut(s)	124, 559
TseFI	GTSAC	2 cut(s)	76, 756
TseI	GCWGC	3 cut(s)	293, 934, 1210
Tsp45I	GTSAC	2 cut(s)	76, 756
TspDTI	ATGAA	4 cut(s)	88, 878, 999, 1308
TspGWI	ACGGA	1 cut(s)	1183
TspRI	CASTG	2 cut(s)	124, 559
VneI	GTGCAC	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	979
XceI	RCATGY	1 cut(s)	655
XmnI	GAANNNNTTC	2 cut(s)	50, 495
XspI	CTAG	2 cut(s)	938, 1077
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.