Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12222811 .. 12224987

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1154100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTGGAAGCACGGAAACAAATCAAAGGCATGGAATGGGCCTCAAAACCGATGGGTCGCATTTCTCGCAGTATGTTTTACATTAGTTTTTCTAGTTTTCATATTGTCAGCTGGCAACACCGTCCCAAAGACCAGTTCATTACTTGGACTTCCGGAGGAAAAGTGGAATAGCTATGAGTCAGTGGTGCGGTTTTCTCCAACCTTAGAGTTTCCAAATGGAACAGAAATAATATGGCAAATACCAGATTCACCTAAAGCAGTTCTTTTTCTGGCGCATGGTTGCGGAGGTAGAGCTCCTCATTTTTGGGATAAATCTTCTCACTGCCCTGACTGCATTGGTTTGCCAGAGGAAAGGCTAATTGCTCTTAATTCTCTTGCCCGAAAGTTTGCTGTCATTACCATATCAAGTGTGGGGACATGCTGGACTATGGGGAAGGAGCTAATTAGAGTTAAAGATATTATCAGATGGTGGGTTGAGAAAAACAAGCTTGAAAAGCTTCCTCTTGTTGCTATGGGGGCCTCTTCTGGGGGATACTTTGTTTCTGTGCTTGCCACTGTGTTGAAGTTCAATAGTATTGCAATCATGATTGCCGAAGGGGTGTTTGATCGAGTCAAAATAGAAGAGAGCTATCCCCCAACCCTTTTCATGCACATGCCCAAAGATATAGTTAGGCAGCAGAAGATTGATGAGTACATGAAAGTTTTGAGGAATAAAGGTGTTGATGTTGCAGAGCTCAAATGCATGGAGTTCCCCTTGTCGCCACATCTCTTAGCTGATAGAATCCCAGGTCTTGATCAGTCTGTTTCTGCTAAGTTGTTTGAACTCTTCCGGCAAAAGGGTTTTATCGATGAGAATGGATATATGAAGAATGATGGCCGTAGAACACATTGGAAAGAAGCTGTGAGAGAGAGTAAAATTATTTCTCTAGACAAGCATCTGGCCCATTACATCCAAGAGGAGTTAAATCTTGCATTTGCGTACCATGAAATGACCAGCTTGCACTCTGACAGGATGTTTAAATGGTTTGAATCTCATATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.75

Weight (kDa)

8.88

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58800
fragaria_vesca	FvH4_6g38090
malus_domestica	MD09G1154100.v1.1 MD17G1140700.v1.1
prunus_persica	Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1
pyrus_communis	pycom09g07320
rosa_chinensis	RchiOBHm_Chr2g0151151
rosa_laevigata	RLG00000020536
rosa_multiflora	Rmu_sc0008346.1_g000001 Rmu_sc0013838.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096700
rosa_rugosa	Rorug02G0425300
rosa_samantha	Rh2AG485700 Rh2BG497600 Rh2CG471500 Rh2DG508600
rosa_wichuraiana	Rw2G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	2 cut(s)	187, 282
AcoI	YGGCCR	1 cut(s)	874
AfaI	GTAC	2 cut(s)	692, 980
AfiI	CCNNNNNNNGG	2 cut(s)	525, 835
AgsI	TTSAA	5 cut(s)	491, 562, 568, 821, 1028
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
Alw21I	GWGCWC	2 cut(s)	295, 735
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	4 cut(s)	38, 516, 874, 939
ApeKI	GCWGC	1 cut(s)	673
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	38, 516, 940
AsuHPI	GGTGA	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	295, 735
Bbv12I	GWGCWC	2 cut(s)	295, 735
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	3 cut(s)	45, 459, 866
BceAI	ACGGC	1 cut(s)	861
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	1 cut(s)	793
BfaI	CTAG	2 cut(s)	92, 926
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	786
BmgT120I	GGNCC	3 cut(s)	38, 516, 940
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	943
Bsa29I	ATCGAT	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 835
Bse1I	ACTGG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	2 cut(s)	948, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	525, 835
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	285, 971
BseXI	GCAGC	1 cut(s)	685
BshFI	GGCC	4 cut(s)	40, 518, 876, 941
BshVI	ATCGAT	1 cut(s)	846
BsiHKAI	GWGCWC	2 cut(s)	295, 735
BsiSI	CCGG	2 cut(s)	152, 829
BslFI	GGGAC	2 cut(s)	107, 427
BslI	CCNNNNNNNGG	2 cut(s)	525, 835
BsmFI	GGGAC	2 cut(s)	107, 427
BsnI	GGCC	4 cut(s)	40, 518, 876, 941
Bsp1286I	GDGCHC	2 cut(s)	295, 735
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	604, 793
BspACI	CCGC	2 cut(s)	187, 282
BspANI	GGCC	4 cut(s)	40, 518, 876, 941
BspDI	ATCGAT	1 cut(s)	846
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	2 cut(s)	604, 793
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	121, 556
Bst6I	CTCTTC	3 cut(s)	526, 615, 830
BstC8I	GCNNGC	3 cut(s)	112, 549, 998
BstDEI	CTNAG	3 cut(s)	202, 769, 810
BstF5I	GGATG	2 cut(s)	948, 1017
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	607, 796
BstMBI	GATC	2 cut(s)	604, 793
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 330, 493, 515
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	2 cut(s)	420, 655
BstSCI	CCNGG	1 cut(s)	784
BstV1I	GCAGC	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	40, 518, 876, 941
BsuTUI	ATCGAT	1 cut(s)	846
BtsCI	GGATG	2 cut(s)	948, 1017
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	186, 319, 552
Cac8I	GCNNGC	3 cut(s)	112, 549, 998
CciI	TCATGA	1 cut(s)	582
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	38, 516, 940
ClaI	ATCGAT	1 cut(s)	846
Csp6I	GTAC	2 cut(s)	691, 979
CviAII	CATG	9 cut(s)	30, 275, 417, 583, 646, 652, 694, 742, 983
CviQI	GTAC	2 cut(s)	691, 979
DdeI	CTNAG	3 cut(s)	202, 769, 810
DpnI	GATC	2 cut(s)	606, 795
DpnII	GATC	2 cut(s)	604, 793
DraI	TTTAAA	1 cut(s)	1018
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	526, 615, 830
EarI	CTCTTC	3 cut(s)	526, 615, 830
Ecl136II	GAGCTC	2 cut(s)	293, 733
Eco24I	GRGCYC	2 cut(s)	295, 735
Eco53kI	GAGCTC	2 cut(s)	293, 733
EcoICRI	GAGCTC	2 cut(s)	293, 733
EcoO109I	RGGNCCY	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	784
EcoT22I	ATGCAT	1 cut(s)	743
EcoT38I	GRGCYC	2 cut(s)	295, 735
FaeI	CATG	9 cut(s)	33, 278, 420, 586, 649, 655, 697, 745, 986
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	107, 427
FatI	CATG	9 cut(s)	29, 274, 416, 582, 645, 651, 693, 741, 982
FauNDI	CATATG	1 cut(s)	1035
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	2 cut(s)	935, 1024
FriOI	GRGCYC	2 cut(s)	295, 735
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	2 cut(s)	92, 926
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	40, 518, 876, 941
HapII	CCGG	2 cut(s)	152, 829
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	9 cut(s)	33, 278, 420, 586, 649, 655, 697, 745, 986
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HindIII	AAGCTT	2 cut(s)	485, 494
HinfI	GANTC	5 cut(s)	176, 245, 609, 780, 1028
HpaII	CCGG	2 cut(s)	152, 829
HphI	GGTGA	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	464, 1006
Hpy188III	TCNNGA	4 cut(s)	152, 583, 791, 926
HpyAV	CCTTC	2 cut(s)	427, 587
HpyCH4III	ACNGT	2 cut(s)	121, 556
HpyCH4V	TGCA	7 cut(s)	333, 578, 649, 728, 741, 971, 1000
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 330, 493, 515
HpyF3I	CTNAG	3 cut(s)	202, 769, 810
Hsp92II	CATG	9 cut(s)	33, 278, 420, 586, 649, 655, 697, 745, 986
HspAI	GCGC	1 cut(s)	272
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	604, 793
LmnI	GCTCC	2 cut(s)	298, 436
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	943
MaeI	CTAG	2 cut(s)	92, 926
MalI	GATC	2 cut(s)	606, 795
MboI	GATC	2 cut(s)	604, 793
MboII	GAAGA	6 cut(s)	306, 513, 632, 691, 817, 877
MhlI	GDGCHC	2 cut(s)	295, 735
MluCI	AATT	4 cut(s)	357, 367, 441, 915
MlyI	GAGTC	2 cut(s)	185, 618
MmeI	TCCRAC	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	743
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	4 cut(s)	366, 450, 962, 1017
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	152, 829
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	4 cut(s)	65, 330, 493, 515
NdeI	CATATG	1 cut(s)	1035
NdeII	GATC	2 cut(s)	604, 793
NlaIII	CATG	9 cut(s)	33, 278, 420, 586, 649, 655, 697, 745, 986
NlaIV	GGNNCC	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	743
NspI	RCATGY	2 cut(s)	420, 655
PagI	TCATGA	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	245, 780, 1028
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	2 cut(s)	184, 617
PpsI	GAGTC	2 cut(s)	184, 617
Psp124BI	GAGCTC	2 cut(s)	295, 735
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	3 cut(s)	38, 516, 940
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	692, 980
RsaNI	GTAC	2 cut(s)	691, 979
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	2 cut(s)	295, 735
SaqAI	TTAA	4 cut(s)	366, 450, 962, 1017
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	2 cut(s)	604, 793
Sau96I	GGNCC	3 cut(s)	38, 516, 940
SchI	GAGTC	2 cut(s)	185, 618
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	295, 735
SfaNI	GCATC	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	650
Sse9I	AATT	4 cut(s)	357, 367, 441, 915
SsiI	CCGC	2 cut(s)	187, 282
SspMI	CTAG	2 cut(s)	92, 926
SstI	GAGCTC	2 cut(s)	295, 735
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	121, 556
TaqI	TCGA	2 cut(s)	607, 846
TasI	AATT	4 cut(s)	357, 367, 441, 915
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	245, 780, 1028
Tru1I	TTAA	4 cut(s)	366, 450, 962, 1017
Tru9I	TTAA	4 cut(s)	366, 450, 962, 1017
TscAI	CASTG	3 cut(s)	186, 326, 559
TseI	GCWGC	1 cut(s)	673
TspDTI	ATGAA	6 cut(s)	88, 126, 634, 710, 878, 999
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	186, 326, 559
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	2 cut(s)	420, 655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	92, 926
Zsp2I	ATGCAT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.