Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011409

Physical Location & Seq

Genomic Coordinates Reverse (-)

5496971 .. 5499014

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGCCGTCATGGACTGAGACCAAAATTCGTCCCAAAAACCTTTCAATCAAAGCCCATAGAAAGTGACCCACCACTCTCAGCCTTCAGGGCGGGTGTATTAACGGTGGTCTGGTATCCAACAACTGAAAAAAGCACACCAAATTCTCAGAGAAAGCTCGCTCCCAGAACTGGATCTGGAGTTCCTCCCGTAAGAATGTGGAAGCACGGAAACAAATCAAAGGCATGGAATGGGCCTCAAAACCGATGGGTCGCATTTCTCGCAGTATGTTTTACATTAGTTCTTCTAGTTTTCATATTGTCAGTTGGCAACACTGTCCCAAAGACCAGTTCATTACTTGGACTTCCAGAGGAAAAGTGGAATAGCTATGAGTCAGTGGTGCGGTTTTCTCCAACCTTAGAGTTTCCAAATGGAACAGAAGTAATATGGCAAATACCAGATTCGCCTAAAGCAGTTCTTTTTCTGGCGCATGGTTGCGGAGGTAGAGCTCCTCATTTTTGGGATAAATCTTCTCACTGCCCTGACTGCATTGGTTTGCCAGAGGAAAGGCTAATTGCTCTTAATTCTCTTGCCCGAAAGTTTGCTGTCATTACCATATCAAGTGTGGGGACATGCTGGACTATGGGGAAGGAGCTAATTAGAGTTAAAGATATTATCAGATGGTGGGTTGAGAAAAACAAGCTTGAAAAGCTTCCTCTTGTTGCTATGGGGGCCTCTTCTGGGGGATACTTTGTTTCTGTGCTTGCCACTGTGTTGAAGTTCAATAGTATTGCAATCATGATTGCCGAAGGGATGTTTGATCGAGTCAAAATAGAAGAGAGCTATCCCCCAACCCTCTTCGTGCACATGCCCAAAGATATAGTTAGGCAGCAAAAGATTGATGAGTACATGAAAGTTTTGAGAAATAAAGGTGTTGATGTTGCAGAACTCAAATGCATGGAGTTCCCCTTGTCGCCACATCTCTTAGCTGATAGAATCGCAGGTCTTGATCAGTCTGTTTCTGCTAAGTTGTTTGAACTCTTCCGGCAAAAGGGTTTTATCGATGAGAATGGATATATGAAGAATGATGGCCGTAGAACACGTTGGAAAGAAGCTGTCAGAGAGAGTAAAATTATTTCTCTAGACAAGCATCTGGCCCATTACATCCAAGAGGAGTTAAATCTTGCATTTGCATATCATGAAATGACCAGTTTGCACTCTGACAGGATGTTTAAATGGTTTGAATCTCATATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

46.86

Weight (kDa)

9.49

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58800
fragaria_vesca	FvH4_6g38090
malus_domestica	MD09G1154100.v1.1 MD17G1140700.v1.1
prunus_persica	Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1
pyrus_communis	pycom09g07320
rosa_chinensis	RchiOBHm_Chr2g0151151
rosa_laevigata	RLG00000020536
rosa_multiflora	Rmu_sc0008346.1_g000001 Rmu_sc0013838.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096700
rosa_rugosa	Rorug02G0425300
rosa_samantha	Rh2AG485700 Rh2BG497600 Rh2CG471500 Rh2DG508600
rosa_wichuraiana	Rw2G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AciI	CCGC	3 cut(s)	92, 382, 477
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	1069
AcsI	RAATTY	2 cut(s)	26, 142
AcuI	CTGAAG	1 cut(s)	70
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	3 cut(s)	170, 720, 1030
AflIII	ACRYGT	1 cut(s)	1079
AgsI	TTSAA	6 cut(s)	47, 686, 757, 763, 1016, 1223
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	9 cut(s)	157, 366, 488, 634, 682, 691, 822, 968, 1094
AluI	AGCT	9 cut(s)	157, 366, 488, 634, 682, 691, 822, 968, 1094
Alw21I	GWGCWC	2 cut(s)	490, 846
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	5 cut(s)	4, 233, 711, 1069, 1134
ApaLI	GTGCAC	1 cut(s)	842
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	2 cut(s)	26, 142
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	4 cut(s)	4, 233, 711, 1135
BaeGI	GKGCMC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	2 cut(s)	490, 846
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	3 cut(s)	240, 654, 1061
BceAI	ACGGC	1 cut(s)	1056
BciVI	GTATCC	2 cut(s)	126, 719
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	287, 1121
BfuAI	ACCTGC	1 cut(s)	971
BfuI	GTATCC	2 cut(s)	126, 719
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	870
BmgT120I	GGNCC	4 cut(s)	4, 233, 711, 1135
BmiI	GGNNCC	1 cut(s)	712
BmsI	GCATC	1 cut(s)	1138
BpmI	CTGGAG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	1041
BsaI	GGTCTC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 720, 1030
Bse1I	ACTGG	3 cut(s)	175, 327, 1188
BseCI	ATCGAT	1 cut(s)	1041
BseGI	GGATG	3 cut(s)	798, 1143, 1212
BseLI	CCNNNNNNNGG	3 cut(s)	170, 720, 1030
BseMII	CTCAG	3 cut(s)	8, 93, 161
BseNI	ACTGG	3 cut(s)	175, 327, 1188
BseRI	GAGGAG	2 cut(s)	480, 1166
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	1 cut(s)	880
BshFI	GGCC	5 cut(s)	6, 235, 713, 1071, 1136
BshVI	ATCGAT	1 cut(s)	1041
BsiHKAI	GWGCWC	2 cut(s)	490, 846
BsiSI	CCGG	1 cut(s)	1024
BslFI	GGGAC	3 cut(s)	17, 302, 622
BslI	CCNNNNNNNGG	3 cut(s)	170, 720, 1030
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	3 cut(s)	17, 302, 622
BsnI	GGCC	5 cut(s)	6, 235, 713, 1071, 1136
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	490, 846
Bsp143I	GATC	3 cut(s)	173, 799, 988
BspACI	CCGC	3 cut(s)	92, 382, 477
BspANI	GGCC	5 cut(s)	6, 235, 713, 1071, 1136
BspCNI	CTCAG	3 cut(s)	9, 92, 160
BspDI	ATCGAT	1 cut(s)	1041
BspHI	TCATGA	2 cut(s)	777, 1177
BspLI	GGNNCC	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	175, 327, 1188
BssMI	GATC	3 cut(s)	173, 799, 988
Bst4CI	ACNGT	3 cut(s)	106, 316, 751
Bst6I	CTCTTC	4 cut(s)	721, 810, 842, 1025
BstC8I	GCNNGC	2 cut(s)	159, 744
BstDEI	CTNAG	6 cut(s)	17, 79, 147, 397, 964, 1005
BstF5I	GGATG	3 cut(s)	798, 1143, 1212
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	3 cut(s)	176, 802, 991
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	173, 799, 988
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 260, 525, 688, 710
BstNSI	RCATGY	2 cut(s)	615, 850
BstSLI	GKGCMC	1 cut(s)	846
BstV1I	GCAGC	1 cut(s)	880
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	1041
BsuI	GTATCC	2 cut(s)	126, 719
BsuRI	GGCC	5 cut(s)	6, 235, 713, 1071, 1136
BsuTUI	ATCGAT	1 cut(s)	1041
BtsCI	GGATG	3 cut(s)	798, 1143, 1212
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	4 cut(s)	312, 381, 514, 747
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	2 cut(s)	159, 744
CciI	TCATGA	2 cut(s)	777, 1177
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	4 cut(s)	4, 233, 711, 1135
ClaI	ATCGAT	1 cut(s)	1041
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	9 cut(s)	11, 225, 470, 612, 778, 847, 889, 937, 1178
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	6 cut(s)	17, 79, 147, 397, 964, 1005
DpnI	GATC	3 cut(s)	175, 801, 990
DpnII	GATC	3 cut(s)	173, 799, 988
DraI	TTTAAA	1 cut(s)	1213
EaeI	YGGCCR	1 cut(s)	1069
Eam1104I	CTCTTC	4 cut(s)	721, 810, 842, 1025
EarI	CTCTTC	4 cut(s)	721, 810, 842, 1025
Ecl136II	GAGCTC	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	938
EcoT38I	GRGCYC	1 cut(s)	490
FaeI	CATG	9 cut(s)	14, 228, 473, 615, 781, 850, 892, 940, 1181
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	3 cut(s)	17, 302, 622
FatI	CATG	9 cut(s)	10, 224, 469, 611, 777, 846, 888, 936, 1177
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	1230
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	1 cut(s)	869
FokI	GGATG	3 cut(s)	805, 1130, 1219
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	869
FspBI	CTAG	2 cut(s)	287, 1121
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	6, 235, 713, 1071, 1136
HapII	CCGG	1 cut(s)	1024
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	9 cut(s)	14, 228, 473, 615, 781, 850, 892, 940, 1181
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	2 cut(s)	680, 689
HinfI	GANTC	5 cut(s)	371, 440, 804, 975, 1223
HpaII	CCGG	1 cut(s)	1024
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	4 cut(s)	150, 659, 1100, 1201
Hpy188III	TCNNGA	6 cut(s)	177, 347, 778, 986, 1121, 1178
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	94, 622, 782
HpyCH4III	ACNGT	3 cut(s)	106, 316, 751
HpyCH4IV	ACGT	1 cut(s)	1081
HpyCH4V	TGCA	8 cut(s)	528, 773, 844, 923, 936, 1166, 1172, 1195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 260, 525, 688, 710
HpyF3I	CTNAG	6 cut(s)	17, 79, 147, 397, 964, 1005
HpySE526I	ACGT	1 cut(s)	1081
Hsp92II	CATG	9 cut(s)	14, 228, 473, 615, 781, 850, 892, 940, 1181
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	3 cut(s)	173, 799, 988
LmnI	GCTCC	3 cut(s)	166, 493, 631
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	2 cut(s)	287, 1121
MaeII	ACGT	1 cut(s)	1081
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	175, 801, 990
MboI	GATC	3 cut(s)	173, 799, 988
MboII	GAAGA	7 cut(s)	275, 501, 708, 827, 829, 1012, 1072
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	490, 846
MluCI	AATT	6 cut(s)	26, 142, 552, 562, 636, 1110
MlyI	GAGTC	2 cut(s)	380, 813
MmeI	TCCRAC	3 cut(s)	143, 416, 1064
Mph1103I	ATGCAT	1 cut(s)	938
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	5 cut(s)	101, 561, 645, 1157, 1212
MspI	CCGG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	5 cut(s)	89, 260, 525, 688, 710
NdeI	CATATG	1 cut(s)	1230
NdeII	GATC	3 cut(s)	173, 799, 988
NlaIII	CATG	9 cut(s)	14, 228, 473, 615, 781, 850, 892, 940, 1181
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	938
NspI	RCATGY	2 cut(s)	615, 850
PagI	TCATGA	2 cut(s)	777, 1177
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	440, 975, 1223
PkrI	GCNGC	1 cut(s)	870
PleI	GAGTC	2 cut(s)	379, 812
PpsI	GAGTC	2 cut(s)	379, 812
Psp124BI	GAGCTC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	4 cut(s)	4, 233, 711, 1135
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	5 cut(s)	101, 561, 645, 1157, 1212
SatI	GCNGC	1 cut(s)	869
Sau3AI	GATC	3 cut(s)	173, 799, 988
Sau96I	GGNCC	4 cut(s)	4, 233, 711, 1135
SchI	GAGTC	2 cut(s)	380, 813
SduI	GDGCHC	2 cut(s)	490, 846
SfaNI	GCATC	1 cut(s)	1138
Sse9I	AATT	6 cut(s)	26, 142, 552, 562, 636, 1110
SsiI	CCGC	3 cut(s)	92, 382, 477
SspMI	CTAG	2 cut(s)	287, 1121
SstI	GAGCTC	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	106, 316, 751
TaiI	ACGT	1 cut(s)	1084
TaqI	TCGA	2 cut(s)	802, 1041
TasI	AATT	6 cut(s)	26, 142, 552, 562, 636, 1110
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	3 cut(s)	440, 975, 1223
Tru1I	TTAA	5 cut(s)	101, 561, 645, 1157, 1212
Tru9I	TTAA	5 cut(s)	101, 561, 645, 1157, 1212
TscAI	CASTG	4 cut(s)	319, 381, 521, 754
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	5 cut(s)	283, 321, 905, 1073, 1194
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	4 cut(s)	319, 381, 521, 754
VneI	GTGCAC	1 cut(s)	842
XapI	RAATTY	2 cut(s)	26, 142
XbaI	TCTAGA	1 cut(s)	1120
XceI	RCATGY	2 cut(s)	615, 850
XcmI	CCANNNNNNNNNTGG	2 cut(s)	354, 601
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	2 cut(s)	287, 1121
Zsp2I	ATGCAT	1 cut(s)	938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.