Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12639356 .. 12640367

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1140700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAATGGGCCTCAAACACGTTGGGTTGCATTTCTGGCAGTGTGTTTTACACTATTTCTTCTGGTTTCGTATTGTCGGTTGGCAACACTGATCAAAAGACCAGTTCATTGCTTGGACTTCCAGAGGAAAAGTGGAATAGCTTTGACTCAGTGGTGAAATTTTCTCCAACCTTAGAGTTTCCAAATGGAACGGAAGTAATATGGCAAATACCAGATTCGCCTAAAGCACTTCTTTTTCTGGCTCATGGGACATGCGGGGCTATGGGGAAGGAGATAATTGTTGTCAAGGATATCATCAGATGGTGGGTTGAGAAAAACAAGCTTGAAAAGCTTCCTCTTGTTGCTAAGGGGGCCTCTTCTGGGAGATACTTTGTTTCTGTGCTTGCCACTGTGTTGAAGTTCAATAGTGTTGATGTTGCAGAGATTGAATGCATGGAGTTCCCCTTGTCGCCACATTTGTTAGCTGATAGAATCCCAGGTCTTGATCAGTCTGTTTCTGCTAAGTTGTTTGAACTCTTCCGGAAAAAGGGTTTTATCGATGAGAACGGATATATGAAGAATGATGGTCGTAAAACACGTTGGAAAGAAGCTGTCAGAGAGAGTAAAATTGTTTCTCTAGACGACCATCTGACCCATTATATCCAGGAGGAGTTAAATCTTGCATTTGCGTATCATGAAATGGCTAGCTTGCACGCTGACAGGATGTTTAAATGGTTTGAATCTCATATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.61

Weight (kDa)

6.18

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58800
fragaria_vesca	FvH4_6g38090
malus_domestica	MD09G1154100.v1.1 MD17G1140700.v1.1
prunus_persica	Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1
pyrus_communis	pycom09g07320
rosa_chinensis	RchiOBHm_Chr2g0151151
rosa_laevigata	RLG00000020536
rosa_multiflora	Rmu_sc0008346.1_g000001 Rmu_sc0013838.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096700
rosa_rugosa	Rorug02G0425300
rosa_samantha	Rh2AG485700 Rh2BG497600 Rh2CG471500 Rh2DG508600
rosa_wichuraiana	Rw2G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	519
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	360, 526
AflIII	ACRYGT	2 cut(s)	18, 575
AgsI	TTSAA	6 cut(s)	326, 397, 403, 428, 512, 719
AjnI	CCWGG	2 cut(s)	475, 642
AluBI	AGCT	6 cut(s)	141, 322, 331, 464, 590, 687
AluI	AGCT	6 cut(s)	141, 322, 331, 464, 590, 687
Aor13HI	TCCGGA	1 cut(s)	519
AoxI	GGCC	2 cut(s)	9, 351
ApoI	RAATTY	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	9, 351
AsuHPI	GGTGA	1 cut(s)	166
AsuNHI	GCTAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	294, 557, 633
BciT130I	CCWGG	2 cut(s)	477, 644
BclI	TGATCA	2 cut(s)	91, 484
BfaI	CTAG	2 cut(s)	617, 684
Bme1390I	CCNGG	2 cut(s)	477, 644
BmgT120I	GGNCC	2 cut(s)	9, 351
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	477, 644
BmtI	GCTAGC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 526
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	477, 644
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	360, 526
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	662
BshFI	GGCC	2 cut(s)	11, 353
BshVI	ATCGAT	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	360, 526
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	11, 353
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	91, 484
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	11, 353
BspCNI	CTCAG	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	537
BspEI	TCCGGA	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	91, 484
Bst2UI	CCWGG	2 cut(s)	477, 644
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	361, 521
BstC8I	GCNNGC	4 cut(s)	384, 685, 689, 693
BstDEI	CTNAG	4 cut(s)	148, 172, 345, 501
BstF5I	GGATG	1 cut(s)	708
BstKTI	GATC	2 cut(s)	94, 487
BstMBI	GATC	2 cut(s)	91, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 328, 350
BstNI	CCWGG	2 cut(s)	477, 644
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	475, 642
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	11, 353
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	708
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	4 cut(s)	46, 87, 156, 387
Cac8I	GCNNGC	4 cut(s)	384, 685, 689, 693
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	9, 351
ClaI	ATCGAT	1 cut(s)	537
CviAII	CATG	4 cut(s)	245, 252, 433, 674
DdeI	CTNAG	4 cut(s)	148, 172, 345, 501
DpnI	GATC	2 cut(s)	93, 486
DpnII	GATC	2 cut(s)	91, 484
DraI	TTTAAA	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	361, 521
EarI	CTCTTC	2 cut(s)	361, 521
Eco32I	GATATC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	475, 642
EcoRV	GATATC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	434
FaeI	CATG	4 cut(s)	248, 255, 436, 677
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	244, 251, 432, 673
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	726
FbaI	TGATCA	2 cut(s)	91, 484
FokI	GGATG	1 cut(s)	715
FspBI	CTAG	2 cut(s)	617, 684
HaeIII	GGCC	2 cut(s)	11, 353
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	4 cut(s)	248, 255, 436, 677
HindIII	AAGCTT	2 cut(s)	320, 329
HinfI	GANTC	4 cut(s)	146, 215, 471, 719
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	299, 596, 630
Hpy188III	TCNNGA	5 cut(s)	122, 482, 520, 617, 674
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	20, 577
HpyCH4V	TGCA	5 cut(s)	30, 419, 432, 662, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 328, 350
HpyF3I	CTNAG	4 cut(s)	148, 172, 345, 501
HpySE526I	ACGT	2 cut(s)	20, 577
Hsp92II	CATG	4 cut(s)	248, 255, 436, 677
Kpn2I	TCCGGA	1 cut(s)	519
Ksp22I	TGATCA	2 cut(s)	91, 484
Kzo9I	GATC	2 cut(s)	91, 484
MaeI	CTAG	2 cut(s)	617, 684
MaeII	ACGT	2 cut(s)	20, 577
MalI	GATC	2 cut(s)	93, 486
MboI	GATC	2 cut(s)	91, 484
MboII	GAAGA	4 cut(s)	51, 348, 508, 568
MluCI	AATT	3 cut(s)	158, 276, 606
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	191, 560
MnlI	CCTC	5 cut(s)	22, 118, 345, 364, 640
Mph1103I	ATGCAT	1 cut(s)	434
MroI	TCCGGA	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	653, 708
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	477, 644
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	2 cut(s)	477, 644
MwoI	GCNNNNNNNGC	3 cut(s)	36, 328, 350
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	2 cut(s)	91, 484
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	4 cut(s)	248, 255, 436, 677
NlaIV	GGNNCC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PctI	GAATGC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	215, 471, 719
PfoI	TCCNGGA	1 cut(s)	642
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	475, 642
PspGI	CCWGG	2 cut(s)	475, 642
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	9, 351
SaqAI	TTAA	2 cut(s)	653, 708
Sau3AI	GATC	2 cut(s)	91, 484
Sau96I	GGNCC	2 cut(s)	9, 351
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	477, 644
Sse9I	AATT	3 cut(s)	158, 276, 606
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	2 cut(s)	617, 684
StyD4I	CCNGG	2 cut(s)	475, 642
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	23, 580
TaqI	TCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	158, 276, 606
TfiI	GAWTC	3 cut(s)	215, 471, 719
Tru1I	TTAA	2 cut(s)	653, 708
Tru9I	TTAA	2 cut(s)	653, 708
TscAI	CASTG	4 cut(s)	46, 94, 156, 394
TspDTI	ATGAA	3 cut(s)	96, 569, 690
TspGWI	ACGGA	2 cut(s)	206, 561
TspRI	CASTG	4 cut(s)	46, 94, 156, 394
XapI	RAATTY	1 cut(s)	158
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	617, 684
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.