Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011409

Physical Location & Seq

Genomic Coordinates Forward (+)

30133017 .. 30135523

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTGGAAACGTGGAAACAAATTGAAACAATATTATGTGCCTCAGAACCGTTTCGTTGCATTTCTGGTTGTGTCTGTGACATTGGTTACCGTTGTTTTCGTATTGTTGTTTCGCAACACTGATCAAAAGCCAACTTCAGTACTTGGACTTCGAATGGAAAAATGGAACAGCTTTGAGTTATCGGTGCAACTATCTCAGACTGTAGAGTTCCGGAATGGAACAGATTTAATATGGCAAATACCAGATTCACCTAAAGCAGTCCTCTTTCTGGCTCATGGCTGTGATGGTAGAGCTGCTAACTTTTGGGACAAGTCTTCTACCTGCCCAAACTGCGTTGGTTTGCCAGAAGAAAGACTAATTGCTCTTCATGCTCTTGCTCGAAAGTTTGCTGTTCTTACCATATCAAGTAGAGGGAGGTGCTGGGCTTTCGGGAAGGAAATGATTACTGTTAAGGATATTATAACATGGTGGGTTAAGAAAAACAAGCTTGAGAAACTTCCTCTTGTGGCTTTGGGTGCCTCTTCTGGGGGATACTTTGTCTCTGTGCTCGCCACCGAGTTAAAGTTCAGTAGTATTACACTTATGATTGCTGAAGGGATGTTTGATCAAATAGATATAAATGAGAACTATCCTCCTACACTATTTGTGCACATGCCTAAAGATCAATTTAGGCAGAGAAAGATAGCCGGGTATATGGAAGTTTTGAAAAATAATGGTGTTGATGTTGGAGAGATCAAGTGCATGGAGTTTCCCTTGACACCATATGTCTTGGCTAATAGAATCCCAGGTCTTGATCAGTCTGTTTCTGCTAAGCTCTTTGAACTCTTCCGCCATGAGGGATTTATTGATGAGAATGGATATATGAAGAATGATGGCCGCAGAACACATTGGAAAGAAGCTGCAAGAAAGAGTAATATCATTTCTCCAGACAAGCAGCTAGCCCATTACATCCAGGAGGAGTTAAATCTTGCATTCGCATTCCATGAAATGACAAGCTTACACTCTGACAAGATCTTCAAATGGTTTGAATCTCATATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.86

Weight (kDa)

9.14

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58800
fragaria_vesca	FvH4_6g38090
malus_domestica	MD09G1154100.v1.1 MD17G1140700.v1.1
prunus_persica	Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1 Prupe.3G170900_v2.0.a1
pyrus_communis	pycom09g07320
rosa_chinensis	RchiOBHm_Chr2g0151151
rosa_laevigata	RLG00000020536
rosa_multiflora	Rmu_sc0008346.1_g000001 Rmu_sc0013838.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096700
rosa_rugosa	Rorug02G0425300
rosa_samantha	Rh2AG485700 Rh2BG497600 Rh2CG471500 Rh2DG508600
rosa_wichuraiana	Rw2G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	2 cut(s)	829, 877
AcoI	YGGCCR	1 cut(s)	874
AcuI	CTGAAG	2 cut(s)	120, 612
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
AgsI	TTSAA	5 cut(s)	25, 706, 821, 1018, 1028
AjnI	CCWGG	2 cut(s)	784, 951
AluBI	AGCT	7 cut(s)	171, 293, 487, 814, 899, 937, 996
AluI	AGCT	7 cut(s)	171, 293, 487, 814, 899, 937, 996
Alw21I	GWGCWC	2 cut(s)	549, 651
Alw26I	GTCTC	1 cut(s)	544
Alw44I	GTGCAC	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	1 cut(s)	874
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	293, 899, 934
Asp700I	GAANNNNTTC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	240
AsuII	TTCGAA	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	515
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	549, 651
BbvI	GCAGC	3 cut(s)	280, 886, 946
BccI	CCATC	2 cut(s)	278, 866
BciT130I	CCWGG	2 cut(s)	786, 953
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	3 cut(s)	121, 604, 793
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	938
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	1011
BisI	GCNGC	4 cut(s)	294, 877, 900, 935
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	4 cut(s)	295, 878, 901, 936
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	688, 786, 953
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	688, 786, 953
BmtI	GCTAGC	1 cut(s)	941
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	909
Bpu1102I	GCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	786, 953
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	2 cut(s)	603, 948
BseLI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BseMII	CTCAG	2 cut(s)	56, 209
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	280, 886, 946
BseYI	CCCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	876
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	549, 651
BsiSI	CCGG	2 cut(s)	211, 687
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	268, 525, 835
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	2 cut(s)	971, 977
BsnI	GGCC	1 cut(s)	876
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	549, 651
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
Bsp1720I	GCTNAGC	1 cut(s)	810
BspACI	CCGC	2 cut(s)	829, 877
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	2 cut(s)	55, 208
BspEI	TCCGGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	329
BspOI	GCTAGC	1 cut(s)	941
BspQI	GCTCTTC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
Bst2UI	CCWGG	2 cut(s)	786, 953
Bst4CI	ACNGT	4 cut(s)	50, 91, 202, 448
Bst6I	CTCTTC	3 cut(s)	369, 526, 830
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	549, 939
BstDEI	CTNAG	3 cut(s)	42, 195, 810
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	603, 948
BstKTI	GATC	6 cut(s)	124, 607, 664, 735, 796, 1014
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
BstNI	CCWGG	2 cut(s)	786, 953
BstNSI	RCATGY	1 cut(s)	655
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	686, 784, 951
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	280, 886, 946
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	603, 948
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	549, 939
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	7 cut(s)	275, 368, 465, 652, 742, 833, 983
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	42, 195, 810
DpnI	GATC	6 cut(s)	123, 606, 663, 734, 795, 1013
DpnII	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	369, 526, 830
EarI	CTCTTC	3 cut(s)	369, 526, 830
EciI	GGCGGA	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	120, 612
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	784, 951
FaeI	CATG	7 cut(s)	278, 371, 468, 655, 745, 836, 986
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	7 cut(s)	274, 367, 464, 651, 741, 832, 982
FauNDI	CATATG	2 cut(s)	763, 1035
FbaI	TGATCA	3 cut(s)	121, 604, 793
Fnu4HI	GCNGC	4 cut(s)	294, 877, 900, 935
FokI	GGATG	2 cut(s)	610, 935
Fsp4HI	GCNGC	4 cut(s)	294, 877, 900, 935
FspBI	CTAG	1 cut(s)	938
GluI	GCNGC	4 cut(s)	294, 877, 900, 935
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	2 cut(s)	211, 687
Hin1II	CATG	7 cut(s)	278, 371, 468, 655, 745, 836, 986
HindIII	AAGCTT	2 cut(s)	485, 994
HinfI	GANTC	3 cut(s)	245, 780, 1028
HpaII	CCGG	2 cut(s)	211, 687
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	3 cut(s)	45, 198, 1006
Hpy188III	TCNNGA	4 cut(s)	211, 430, 791, 926
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	2 cut(s)	427, 587
HpyCH4III	ACNGT	4 cut(s)	50, 91, 202, 448
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	6 cut(s)	59, 187, 649, 741, 902, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
HpyF3I	CTNAG	3 cut(s)	42, 195, 810
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	7 cut(s)	278, 371, 468, 655, 745, 836, 986
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	3 cut(s)	121, 604, 793
Kzo9I	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	3 cut(s)	280, 886, 946
MaeI	CTAG	1 cut(s)	938
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	76, 85
MalI	GATC	6 cut(s)	123, 606, 663, 734, 795, 1013
MboI	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
MboII	GAAGA	7 cut(s)	306, 356, 359, 513, 817, 877, 1006
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	2 cut(s)	549, 651
MluCI	AATT	3 cut(s)	20, 357, 665
MmeI	TCCRAC	1 cut(s)	706
MroI	TCCGGA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	5 cut(s)	227, 450, 474, 560, 962
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	2 cut(s)	211, 687
MspR9I	CCNGG	3 cut(s)	688, 786, 953
Mva1269I	GAATGC	2 cut(s)	971, 977
MvaI	CCWGG	2 cut(s)	786, 953
MwoI	GCNNNNNNNGC	3 cut(s)	330, 368, 515
NciI	CCSGG	1 cut(s)	688
NdeI	CATATG	2 cut(s)	763, 1035
NdeII	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	7 cut(s)	278, 371, 468, 655, 745, 836, 986
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	655
NspV	TTCGAA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	2 cut(s)	971, 977
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	245, 780, 1028
PfoI	TCCNGGA	1 cut(s)	951
PkrI	GCNGC	4 cut(s)	295, 878, 901, 936
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	784, 951
PspEI	GGTNACC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	2 cut(s)	784, 951
PspN4I	GGNNCC	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	1011
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	5 cut(s)	227, 450, 474, 560, 962
SatI	GCNGC	4 cut(s)	294, 877, 900, 935
Sau3AI	GATC	6 cut(s)	121, 604, 661, 732, 793, 1011
ScaI	AGTACT	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	688, 786, 953
SduI	GDGCHC	2 cut(s)	549, 651
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	20, 357, 665
SsiI	CCGC	2 cut(s)	829, 877
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	938
StyD4I	CCNGG	3 cut(s)	686, 784, 951
TaaI	ACNGT	4 cut(s)	50, 91, 202, 448
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	151, 379
TasI	AATT	3 cut(s)	20, 357, 665
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	3 cut(s)	245, 780, 1028
Tru1I	TTAA	5 cut(s)	227, 450, 474, 560, 962
Tru9I	TTAA	5 cut(s)	227, 450, 474, 560, 962
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	293, 899, 934
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	356, 878, 999
TspRI	CASTG	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	647
XceI	RCATGY	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	938
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.