Prupe.3G170900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011409
Physical Location & Seq
Forward (+)
18984979 .. 18987358
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G170900.1

Sequence Viewer

Length: 1044 bp
ATGTTGAACCGCGGAAACAGATCGAAGGCATGGAATGGGCCTCAAAACCGTTTGGCTGGACTTGTGGTAGTGTCTCTTACAGTGTTTCTTCTCATTTTCATATTGTCAGTTGGCACCAATGATCAAAAGCCCAGTTCATTACTTGAACTTCCAAAGGAAAAGTGGCATAGCTTTAAGTCACTGGTGCAACTTTCACCAACCTTAGAGTTTCGAAATGGAACTGATGTAATATGGCAAATACCAGATTCGCCTAAAGCAGTTCTTTTTCTTGCTCATGGTTGCAATGGTAGAGCTGCTCACTTTTGGGACAAGTCTACTCACTGTCCTAACTGCATTGGTTTGCCAGAAGAAAGACTAATTGCTCTTCATGCTCTTGCTCGAAAGTTTGCTGTCCTTACTATATCAAGTGCAGGGATATGCTGGACTCTTGGGGAAGAGATAATTATTGTTAAAGATATTATCAAATGGTGGGTTAAGAAGAACAAGCTTGAAAAGCTTCCTCTTGTTGCTATGGGGGCCTCTTCCGGGGGATACTTTGTTTCTGTGCTTGCCACTGTGTTGAAGTTCACTAGTATTACAATTATGATTGCTGAAGGGAAGTTTGATAAAATGGACATAAAAGAGAGCTATCCCCCTACTCTTTTCATGCACATGCCGAAGGATATATTAAGGAAGCAAAAGATAGATGAGTATATGGAAATTTTAAGAAATAAAGGGGTTGATGTTGCAGAGATTGAATGCAAGGAGTTCCCCTTGTCACCACATCTCTTAGCTGATAGAATCCCAGGTCTTGATCTGTCTGTTTCTGCTAAGCTATTTGAACTCTTCCGGCACAAGGGTTTTATCGATGAGAATGGATATATGAAGAATGATGGGCGTAGAACACGTTGGAAAGAAGCTGTCAGAGAGAGTAAAATTATTTTCCCAGACAAGCATCTGGCCCATTACATTCAGGAGGAGTTAAATCTGGCATTTGCATACCATGAAATGACTAGCTTGCACTCTGACAGGATGTTTATATGGTTTGAATCTCATATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.72

Weight (kDa)

9.03

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 10, 12
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 525, 835
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 7 cut(s) 7, 146, 491, 562, 737, 821, 1028
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 9 cut(s) 171, 293, 487, 496, 627, 773, 814, 899, 996
AluI AGCT 9 cut(s) 171, 293, 487, 496, 627, 773, 814, 899, 996
Alw26I GTCTC 1 cut(s) 78
AoxI GGCC 3 cut(s) 38, 516, 939
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 38, 516, 940
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 2 cut(s) 186, 750
AsuII TTCGAA 1 cut(s) 211
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 866
BciT130I CCWGG 1 cut(s) 786
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 78
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 570, 993
BfuI GTATCC 1 cut(s) 524
BisI GCNGC 1 cut(s) 294
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 526, 786
BmgT120I GGNCC 3 cut(s) 38, 516, 940
BmiI GGNNCC 2 cut(s) 115, 517
BmrFI CCNGG 2 cut(s) 526, 786
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 943
BmuI ACTGGG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 526
Bsa29I ATCGAT 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 10, 525, 784
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 835
Bse1I ACTGG 2 cut(s) 132, 186
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 786
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 3 cut(s) 10, 525, 784
BseGI GGATG 1 cut(s) 1017
BseLI CCNNNNNNNGG 2 cut(s) 525, 835
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 2 cut(s) 132, 186
BseRI GAGGAG 1 cut(s) 971
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 40, 518, 941
BshNI GGYRCC 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 846
BsiSI CCGG 2 cut(s) 525, 829
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 525, 835
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 40, 518, 941
Bsp119I TTCGAA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 20, 121, 793
Bsp1720I GCTNAGC 1 cut(s) 810
BspACI CCGC 2 cut(s) 10, 12
BspANI GGCC 3 cut(s) 40, 518, 941
BspDI ATCGAT 1 cut(s) 846
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 115, 517
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 2 cut(s) 132, 186
BssECI CCNNGG 3 cut(s) 10, 525, 784
BssMI GATC 3 cut(s) 20, 121, 793
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 4 cut(s) 50, 82, 323, 556
Bst6I CTCTTC 4 cut(s) 369, 429, 526, 830
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 549, 998
BstDEI CTNAG 3 cut(s) 202, 769, 810
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 1017
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 3 cut(s) 23, 124, 796
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 20, 121, 793
BstMWI GCNNNNNNNGC 3 cut(s) 368, 493, 515
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 2 cut(s) 524, 784
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 846
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 3 cut(s) 40, 518, 941
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 1017
BtsIMutI CAGTG 4 cut(s) 87, 179, 319, 552
Cac8I GCNNGC 2 cut(s) 549, 998
Cfr13I GGNCC 3 cut(s) 38, 516, 940
Cfr42I CCGCGG 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 846
CviAII CATG 6 cut(s) 30, 275, 368, 646, 652, 983
DdeI CTNAG 3 cut(s) 202, 769, 810
DpnI GATC 3 cut(s) 22, 123, 795
DpnII GATC 3 cut(s) 20, 121, 793
Eam1104I CTCTTC 4 cut(s) 369, 429, 526, 830
EarI CTCTTC 4 cut(s) 369, 429, 526, 830
Eco57I CTGAAG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 516
EcoRII CCWGG 1 cut(s) 784
FaeI CATG 6 cut(s) 33, 278, 371, 649, 655, 986
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 29, 274, 367, 645, 651, 982
FauNDI CATATG 1 cut(s) 1035
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 1024
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 570, 993
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 3 cut(s) 40, 518, 941
HapII CCGG 2 cut(s) 525, 829
Hin1II CATG 6 cut(s) 33, 278, 371, 649, 655, 986
HindIII AAGCTT 2 cut(s) 485, 494
HinfI GANTC 4 cut(s) 245, 424, 780, 1028
HpaII CCGG 2 cut(s) 525, 829
HphI GGTGA 2 cut(s) 186, 750
Hpy166II GTNNAC 2 cut(s) 315, 567
Hpy188I TCNGA 2 cut(s) 905, 1006
Hpy188III TCNNGA 2 cut(s) 791, 953
Hpy8I GTNNAC 2 cut(s) 315, 567
HpyAV CCTTC 3 cut(s) 19, 587, 652
HpyCH4III ACNGT 4 cut(s) 50, 82, 323, 556
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 9 cut(s) 187, 282, 333, 410, 649, 728, 741, 977, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 493, 515
HpyF3I CTNAG 3 cut(s) 202, 769, 810
HpySE526I ACGT 1 cut(s) 886
Hsp92II CATG 6 cut(s) 33, 278, 371, 649, 655, 986
Ksp22I TGATCA 1 cut(s) 121
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 20, 121, 793
LguI GCTCTTC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 943
MaeI CTAG 2 cut(s) 570, 993
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 2 cut(s) 177, 756
MalI GATC 3 cut(s) 22, 123, 795
MboI GATC 3 cut(s) 20, 121, 793
MboII GAAGA 8 cut(s) 80, 356, 359, 446, 490, 513, 817, 877
MluCI AATT 5 cut(s) 357, 441, 579, 699, 915
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 869
MnlI CCTC 5 cut(s) 51, 510, 529, 949, 1032
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 6 cut(s) 174, 450, 474, 668, 704, 962
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 525, 829
MspR9I CCNGG 2 cut(s) 526, 786
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 368, 493, 515
NciI CCSGG 1 cut(s) 526
NdeI CATATG 1 cut(s) 1035
NdeII GATC 3 cut(s) 20, 121, 793
NlaIII CATG 6 cut(s) 33, 278, 371, 649, 655, 986
NlaIV GGNNCC 2 cut(s) 115, 517
NmuCI GTSAC 2 cut(s) 177, 756
NspI RCATGY 1 cut(s) 655
NspV TTCGAA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 245, 780, 1028
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 2 cut(s) 115, 517
PspPI GGNCC 3 cut(s) 38, 516, 940
RseI CAYNNNNRTG 1 cut(s) 650
SacII CCGCGG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 6 cut(s) 174, 450, 474, 668, 704, 962
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 20, 121, 793
Sau96I GGNCC 3 cut(s) 38, 516, 940
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 526, 786
SfaNI GCATC 1 cut(s) 943
Sfr303I CCGCGG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 650
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 5 cut(s) 357, 441, 579, 699, 915
SsiI CCGC 2 cut(s) 10, 12
SspMI CTAG 2 cut(s) 570, 993
StyD4I CCNGG 2 cut(s) 524, 784
TaaI ACNGT 4 cut(s) 50, 82, 323, 556
TaiI ACGT 1 cut(s) 889
TaqI TCGA 4 cut(s) 23, 211, 379, 846
TasI AATT 5 cut(s) 357, 441, 579, 699, 915
TfiI GAWTC 3 cut(s) 245, 780, 1028
Tru1I TTAA 6 cut(s) 174, 450, 474, 668, 704, 962
Tru9I TTAA 6 cut(s) 174, 450, 474, 668, 704, 962
TscAI CASTG 4 cut(s) 87, 186, 326, 559
TseFI GTSAC 2 cut(s) 177, 756
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 177, 756
TspDTI ATGAA 6 cut(s) 88, 126, 356, 634, 878, 999
TspRI CASTG 4 cut(s) 87, 186, 326, 559
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 570, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.