AT3G59050

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21824696 .. 21827509
2814 bp
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UTR
Exon/CDS
Intron
AT3G59050.1

Sequence Viewer

Length: 1467 bp
ATGGAGTCCGGAGGCAAAACTAATCGTCAGCTGCGTAAAGCTATTTGCGTCTCAACAGACGAGAAGATGAAGAAGAAGAGATCACCTTCAGTGATAGTGATTGGAGGTGGTATGGCTGGAATTTCAGCCGCTCGCACTCTTCAGGATGCTTCCTTTCAGGTTGTTGTATTGGAGTCTCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCAGTTGATCTCGGTGCATCTTGGTTGCATGGTGTCTGTAAAGAGAATCCTTTGGCTGCAGTAATTGGTAGATTAGGATTACCTCTTTATCGTACTAGCGGTGACAATTCGGTTTTGTATGATCACGATCTTGAGAGTTATGCTCTGTTCGACAAGGCTGGTAACCAAGTTTCTCAAGAGTTGGTGACAAAAGTTGGCGAAAATTTTGAGCACATTCTGGAAGAGATCTGTAAAGTCAGGGATGAGCAGGACGAAGACATGTCAATAGCTCAAGCCTTTTCTATTGTATTTAAGAGGAACCCTGAATTGAGGTTGGAGGGACTTGCCCATAATGTGCTTCAGTGGTACTTGTGCCGCATGGAAGGATGGTTTGCTGCTGATGCTGAAACCATCTCGGCAAAGTGTTGGGATCAGGAAGAACTGTTGCCCGGTGGACATGGTCTTATGGTTAGAGGGTATCGCCCTGTAATCAACACTCTCTCGAAAGGTCTTGATATACGACTAAGTCACAGAATTACCAAGATTTCAAGGCGCTACAGTGGTGTGAAGGTGACTACAGAGAAAGGAGACACGTTTGTTGCGGATGCTGCAGTCATTGCTCTTCCTCTAGGAGTCTTAAAGTCAGGAATGATAACATTCGAACCAAAGCTTCCACAGTGGAAACAAGAAGCTATCAACGATCTCGGTGTTGGAATCGAGAACAAGATCATATTGAATTTTGACAACGTCTTTTGGCCAAACGTAGAGTTTTTAGGAGTCGTTGCAGAAACTTCCTACGGATGCAGTTATTTCTTGAACCTGCATAAAGCCACAAGCCATCCTGTCCTTGTTTACATGCCGGCTGGTCAGCTCGCTAGAGACATCGAGAAAAAGTCCGATGAAGCAGCTGCAAATTTTGCCTTTTCGCAACTACAGAAAATTCTTCCAGATGCCTCTTCACCGATAAATTATTTGGTATCAAGGTGGGGATCAGACATCAATTCATTGGGATCATATAGCTATGACATTGTGAACAAACCTCACGACCTCTATGAGAGACTGAGAGTGCCATTGGATAATCTATTCTTTGCGGGGGAAGCCACTAGCTCAAGCTACCCGGGATCAGTGCACGGTGCTTATTCAACCGGAGTGCTGGCAGCTGAAGACTGCAGGATGCGTGTGCTTGAGCGCTATGGAGAGCTCGAACATGAGATGGAAGAGGAAGCTCCTGCTTCTGTCCCTCTTCTGATCTCCCGTATGTAA

Protein Analysis

488

Amino Acids

54.13

Weight (kDa)

5.64

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_2 PF00890 31 - 74 5.7e-07 FAD binding domain
DAO PF01266 31 - 275 1.5e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 33 - 96 1.2e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 38 - 458 2.9e-95 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1032
AccBSI CCGCTC 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 5 cut(s) 129, 324, 580, 806, 1295
AclWI GGATC 4 cut(s) 642, 1201, 1222, 1333
AcoI YGGCCR 1 cut(s) 959
AcsI RAATTY 5 cut(s) 120, 427, 940, 1117, 1143
AcuI CTGAAG 4 cut(s) 72, 125, 548, 1386
AfaI GTAC 2 cut(s) 319, 572
AfeI AGCGCT 1 cut(s) 1394
AflIII ACRYGT 2 cut(s) 483, 795
AgsI TTSAA 4 cut(s) 753, 940, 1021, 1347
Alw21I GWGCWC 3 cut(s) 438, 1335, 1407
Alw26I GTCTC 5 cut(s) 55, 180, 786, 1077, 1255
Alw44I GTGCAC 1 cut(s) 1331
AlwI GGATC 4 cut(s) 642, 1201, 1222, 1333
Ama87I CYCGRG 1 cut(s) 1321
Aor13HI TCCGGA 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 1394
AoxI GGCC 1 cut(s) 959
ApaLI GTGCAC 1 cut(s) 1331
ApeKI GCWGC 7 cut(s) 31, 281, 599, 812, 1109, 1112, 1361
ApoI RAATTY 5 cut(s) 120, 427, 940, 1117, 1143
AspLEI GCGC 2 cut(s) 759, 1395
AsuC2I CCSGG 3 cut(s) 654, 1322, 1323
AsuHPI GGTGA 5 cut(s) 75, 338, 421, 787, 1155
AsuII TTCGAA 1 cut(s) 864
AvaI CYCGRG 1 cut(s) 1321
BaeGI GKGCMC 1 cut(s) 1335
BalI TGGCCA 1 cut(s) 961
BanII GRGCYC 1 cut(s) 1407
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 486, 1374
Bbv12I GWGCWC 3 cut(s) 438, 1335, 1407
BbvI GCAGC 7 cut(s) 18, 268, 586, 799, 1099, 1121, 1373
BccI CCATC 4 cut(s) 585, 623, 1050, 1411
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 3 cut(s) 654, 1322, 1323
BcoDI GTCTC 5 cut(s) 55, 180, 786, 1077, 1255
BfaI CTAG 4 cut(s) 321, 833, 1080, 1308
BfmI CTRYAG 6 cut(s) 282, 760, 780, 813, 1136, 1372
BfoI RGCGCY 2 cut(s) 760, 1396
BfuAI ACCTGC 1 cut(s) 1032
BglII AGATCT 1 cut(s) 450
BisI GCNGC 9 cut(s) 32, 129, 282, 580, 600, 813, 1110, 1113, 1362
BlsI GCNGC 9 cut(s) 33, 130, 283, 581, 601, 814, 1111, 1114, 1363
Bme1390I CCNGG 3 cut(s) 654, 1322, 1323
BmeT110I CYCGRG 1 cut(s) 1321
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 3 cut(s) 654, 1322, 1323
BmsI GCATC 7 cut(s) 136, 251, 595, 799, 995, 1144, 1368
BpiI GAAGAC 2 cut(s) 486, 1374
BplI GAGNNNNNCTC 2 cut(s) 352, 384
Bpu14I TTCGAA 1 cut(s) 864
BpuEI CTTGAG 5 cut(s) 377, 384, 480, 1297, 1409
BpuMI CCSGG 3 cut(s) 654, 1322, 1323
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 1321
BsaWI WCCGGW 2 cut(s) 8, 1349
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 1321
BseGI GGATG 7 cut(s) 151, 472, 596, 814, 1010, 1042, 1383
BseJI GATNNNNATC 1 cut(s) 351
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 1 cut(s) 1256
BseNI ACTGG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 1335
BseXI GCAGC 7 cut(s) 18, 268, 586, 799, 1099, 1121, 1373
BshFI GGCC 1 cut(s) 961
BsiHKAI GWGCWC 3 cut(s) 438, 1335, 1407
BsiHKCI CYCGRG 1 cut(s) 1321
BsiSI CCGG 5 cut(s) 9, 654, 1064, 1322, 1350
BslFI GGGAC 2 cut(s) 558, 1427
BsmAI GTCTC 5 cut(s) 55, 180, 786, 1077, 1255
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 558, 1427
BsnI GGCC 1 cut(s) 961
BsoBI CYCGRG 1 cut(s) 1321
Bsp119I TTCGAA 1 cut(s) 864
Bsp1286I GDGCHC 3 cut(s) 438, 1335, 1407
Bsp13I TCCGGA 1 cut(s) 8
BspACI CCGC 5 cut(s) 129, 324, 580, 806, 1295
BspANI GGCC 1 cut(s) 961
BspCNI CTCAG 1 cut(s) 1257
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 524
BspMAI CTGCAG 3 cut(s) 286, 817, 1376
BspMI ACCTGC 1 cut(s) 1032
BspPI GGATC 4 cut(s) 642, 1201, 1222, 1333
BspQI GCTCTTC 1 cut(s) 831
BspT104I TTCGAA 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 1063
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 1 cut(s) 1321
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 4 cut(s) 648, 764, 882, 1337
Bst6I CTCTTC 7 cut(s) 71, 144, 441, 831, 1165, 1416, 1452
BstAPI GCANNNNNTGC 2 cut(s) 821, 1121
BstBI TTCGAA 1 cut(s) 864
BstC8I GCNNGC 4 cut(s) 133, 1065, 1077, 1359
BstDEI CTNAG 2 cut(s) 728, 1265
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 7 cut(s) 151, 472, 596, 814, 1010, 1042, 1383
BstH2I RGCGCY 2 cut(s) 760, 1396
BstHHI GCGC 2 cut(s) 759, 1395
BstMAI GTCTC 5 cut(s) 55, 180, 786, 1077, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 605, 812, 821, 1121, 1301
BstNSI RCATGY 2 cut(s) 487, 1063
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 652, 1320, 1321
BstSFI CTRYAG 6 cut(s) 282, 760, 780, 813, 1136, 1372
BstSLI GKGCMC 1 cut(s) 1335
BstV1I GCAGC 7 cut(s) 18, 268, 586, 799, 1099, 1121, 1373
BstV2I GAAGAC 2 cut(s) 486, 1374
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 1 cut(s) 961
BtsCI GGATG 7 cut(s) 151, 472, 596, 814, 1010, 1042, 1383
BtsIMutI CAGTG 6 cut(s) 96, 204, 572, 769, 887, 1335
BveI ACCTGC 1 cut(s) 1032
Cac8I GCNNGC 4 cut(s) 133, 1065, 1077, 1359
CfoI GCGC 2 cut(s) 759, 1395
Cfr10I RCCGGY 1 cut(s) 1063
Cfr9I CCCGGG 1 cut(s) 1321
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 318, 571
CviAII CATG 6 cut(s) 254, 484, 583, 662, 1060, 1412
CviQI GTAC 2 cut(s) 318, 571
DdeI CTNAG 2 cut(s) 728, 1265
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 7 cut(s) 71, 144, 441, 831, 1165, 1416, 1452
EarI CTCTTC 7 cut(s) 71, 144, 441, 831, 1165, 1416, 1452
Ecl136II GAGCTC 1 cut(s) 1405
Eco24I GRGCYC 1 cut(s) 1407
Eco47III AGCGCT 1 cut(s) 1394
Eco53kI GAGCTC 1 cut(s) 1405
Eco57I CTGAAG 4 cut(s) 72, 125, 548, 1386
Eco88I CYCGRG 1 cut(s) 1321
Eco91I GGTNACC 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 1405
EcoO65I GGTNACC 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 1407
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 6 cut(s) 257, 487, 586, 665, 1063, 1415
FaqI GGGAC 2 cut(s) 558, 1427
FatI CATG 6 cut(s) 253, 483, 582, 661, 1059, 1411
FauI CCCGC 1 cut(s) 1288
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 9 cut(s) 32, 129, 282, 580, 600, 813, 1110, 1113, 1362
FokI GGATG 7 cut(s) 158, 479, 603, 821, 1017, 1029, 1390
FriOI GRGCYC 1 cut(s) 1407
Fsp4HI GCNGC 9 cut(s) 32, 129, 282, 580, 600, 813, 1110, 1113, 1362
FspBI CTAG 4 cut(s) 321, 833, 1080, 1308
GlaI GCGC 2 cut(s) 758, 1394
GluI GCNGC 9 cut(s) 32, 129, 282, 580, 600, 813, 1110, 1113, 1362
HaeII RGCGCY 2 cut(s) 760, 1396
HaeIII GGCC 1 cut(s) 961
HapII CCGG 5 cut(s) 9, 654, 1064, 1322, 1350
HgaI GACGC 1 cut(s) 37
HhaI GCGC 2 cut(s) 759, 1395
Hin1II CATG 6 cut(s) 257, 487, 586, 665, 1063, 1415
Hin6I GCGC 2 cut(s) 757, 1393
HinP1I GCGC 2 cut(s) 757, 1393
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 6 cut(s) 5, 173, 271, 837, 918, 981
HpaII CCGG 5 cut(s) 9, 654, 1064, 1322, 1350
HphI GGTGA 5 cut(s) 75, 338, 421, 787, 1155
Hpy166II GTNNAC 6 cut(s) 194, 202, 659, 1057, 1237, 1333
Hpy188I TCNGA 3 cut(s) 1102, 1198, 1452
Hpy8I GTNNAC 6 cut(s) 194, 202, 659, 1057, 1237, 1333
HpyAV CCTTC 3 cut(s) 96, 581, 766
HpyCH4III ACNGT 4 cut(s) 648, 764, 882, 1337
HpyCH4IV ACGT 3 cut(s) 797, 951, 966
HpyF10VI GCNNNNNNNGC 5 cut(s) 605, 812, 821, 1121, 1301
HpyF3I CTNAG 2 cut(s) 728, 1265
HpySE526I ACGT 3 cut(s) 797, 951, 966
Hsp92II CATG 6 cut(s) 257, 487, 586, 665, 1063, 1415
HspAI GCGC 2 cut(s) 757, 1393
Kpn2I TCCGGA 1 cut(s) 8
KroI GCCGGC 1 cut(s) 1063
KroNI GCCGGC 1 cut(s) 1065
Ksp22I TGATCA 1 cut(s) 346
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 1 cut(s) 1435
Lsp1109I GCAGC 7 cut(s) 18, 268, 586, 799, 1099, 1121, 1373
LweI GCATC 7 cut(s) 136, 251, 595, 799, 995, 1144, 1368
MaeI CTAG 4 cut(s) 321, 833, 1080, 1308
MaeII ACGT 3 cut(s) 797, 951, 966
MaeIII GTNAC 6 cut(s) 179, 326, 386, 409, 731, 775
MbiI CCGCTC 1 cut(s) 131
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 3 cut(s) 438, 1335, 1407
MlsI TGGCCA 1 cut(s) 961
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 4 cut(s) 14, 182, 846, 990
MmeI TCCRAC 2 cut(s) 519, 895
Mox20I TGGCCA 1 cut(s) 961
MroI TCCGGA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 961
MseI TTAA 2 cut(s) 516, 842
Msp20I TGGCCA 1 cut(s) 961
MspA1I CMGCKG 3 cut(s) 31, 1112, 1364
MspI CCGG 5 cut(s) 9, 654, 1064, 1322, 1350
MspR9I CCNGG 3 cut(s) 654, 1322, 1323
MwoI GCNNNNNNNGC 5 cut(s) 605, 812, 821, 1121, 1301
NaeI GCCGGC 1 cut(s) 1065
NciI CCSGG 3 cut(s) 654, 1322, 1323
NgoMIV GCCGGC 1 cut(s) 1063
NlaIII CATG 6 cut(s) 257, 487, 586, 665, 1063, 1415
NlaIV GGNNCC 1 cut(s) 524
NmeAIII GCCGAG 1 cut(s) 599
NmuCI GTSAC 5 cut(s) 179, 326, 409, 731, 775
NspI RCATGY 2 cut(s) 487, 1063
NspV TTCGAA 1 cut(s) 864
PciI ACATGT 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 1065
PfeI GAWTC 2 cut(s) 271, 918
PflFI GACNNNGTC 3 cut(s) 663, 729, 950
PkrI GCNGC 9 cut(s) 33, 130, 283, 581, 601, 814, 1111, 1114, 1363
PleI GAGTC 4 cut(s) 13, 181, 845, 989
PpsI GAGTC 4 cut(s) 13, 181, 845, 989
PscI ACATGT 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 1407
PspEI GGTNACC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 524
PstI CTGCAG 3 cut(s) 286, 817, 1376
PsuI RGATCY 1 cut(s) 450
PsyI GACNNNGTC 3 cut(s) 663, 729, 950
PvuII CAGCTG 3 cut(s) 31, 1112, 1364
RsaI GTAC 2 cut(s) 319, 572
RsaNI GTAC 2 cut(s) 318, 571
SacI GAGCTC 1 cut(s) 1407
SapI GCTCTTC 1 cut(s) 831
SaqAI TTAA 2 cut(s) 516, 842
SatI GCNGC 9 cut(s) 32, 129, 282, 580, 600, 813, 1110, 1113, 1362
SchI GAGTC 4 cut(s) 14, 182, 846, 990
ScrFI CCNGG 3 cut(s) 654, 1322, 1323
SduI GDGCHC 3 cut(s) 438, 1335, 1407
SfaNI GCATC 7 cut(s) 136, 251, 595, 799, 995, 1144, 1368
SfcI CTRYAG 6 cut(s) 282, 760, 780, 813, 1136, 1372
SfuI TTCGAA 1 cut(s) 864
SmaI CCCGGG 1 cut(s) 1323
SmlI CTYRAG 5 cut(s) 356, 399, 495, 1312, 1388
SmoI CTYRAG 5 cut(s) 356, 399, 495, 1312, 1388
SsiI CCGC 5 cut(s) 129, 324, 580, 806, 1295
SspMI CTAG 4 cut(s) 321, 833, 1080, 1308
SstI GAGCTC 1 cut(s) 1407
StyD4I CCNGG 3 cut(s) 652, 1320, 1321
TaaI ACNGT 4 cut(s) 648, 764, 882, 1337
TaiI ACGT 3 cut(s) 800, 954, 969
TaqI TCGA 6 cut(s) 375, 707, 864, 921, 1089, 1407
TauI GCSGC 2 cut(s) 131, 582
TfiI GAWTC 2 cut(s) 271, 918
Tru1I TTAA 2 cut(s) 516, 842
Tru9I TTAA 2 cut(s) 516, 842
TscAI CASTG 6 cut(s) 96, 211, 572, 769, 887, 1335
TseFI GTSAC 5 cut(s) 179, 326, 409, 731, 775
TseI GCWGC 7 cut(s) 31, 281, 599, 812, 1109, 1112, 1361
Tsp45I GTSAC 5 cut(s) 179, 326, 409, 731, 775
TspDTI ATGAA 3 cut(s) 83, 1119, 1197
TspGWI ACGGA 1 cut(s) 1017
TspMI CCCGGG 1 cut(s) 1321
TspRI CASTG 6 cut(s) 96, 211, 572, 769, 887, 1335
Tth111I GACNNNGTC 3 cut(s) 663, 729, 950
VneI GTGCAC 1 cut(s) 1331
XapI RAATTY 5 cut(s) 120, 427, 940, 1117, 1143
XceI RCATGY 2 cut(s) 487, 1063
XmaI CCCGGG 1 cut(s) 1321
XspI CTAG 4 cut(s) 321, 833, 1080, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.