Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008300

Physical Location & Seq

Genomic Coordinates Forward (+)

69931220 .. 69933412

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCAAACACATGTCCATTTCAATTTAAATGCCGAGTCTATCATCCTGCTGTGACTCCTGAAGTTGAACTAATTATTGAAGAACTGCTTCCTGGTGGTCATGGTCTTATGGTCAGGGGTTATCGCCCTGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCCTGAGCCACAGGGTGACAAAAATTTTGAGGCGATATAATGGTGTGATGGTAACAGTAGAGGATGGGAGATCATTTGTTGCAGATGCTGCAATTATTGCTGTTCCTCTTGGTGTGCTTAAGGCAAATACCATAAAGTTTGAGCCAAAGCTACCCGACTGGAAGGAAGCAGCCATTGCTGACCTTGGAGTGGGAATTGAGAATAAGATAGTGTTGCACTTTGAGAAGCTGGCCAGAGACATTGAGAAAATGTCCGATGAAGAGGCTGCTAATTTTGCATATATGCAACTCAAGAAGATCCTTCCAGATGCTTCTGATCCGATTCATTTTCTTGTTTCTCACTGGGGAACAGATATAAATTCCCTTGGGTCCTATAGCTATGATATGGTAGGCAAACCCCATGATCTGTATGAGAAGCTAAGGGTCCCGGTAGATAACCTTTTCTTTGCTGGGGAGGCAACAAGCGTGGACTTCCCAGGTTCTGTGCATGGTGCATTCGCTACTGGAGCAATGGCCGCTGAAGACTGCAGGATGCGTGTTCTGGAGCGATACGGTGAGTTGGATTTGTTCGAGCCAGTCATGGGTGAGGAGGTCATGTCTATCCCAATTCAGATCTCCCGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0042402 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046592 GO:0055114 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 map00330 map00410

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

262

Amino Acids

29.17

Weight (kDa)

5.52

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	33 - 130	9.5e-24	Flavin containing amine oxidoreductase
Amino_oxidase	PF01593	132 - 230	1.5e-24	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43020 AT3G59050
fragaria_vesca	FvH4_6g38950 FvH4_6g38950 FvH4_6g38950 FvH4_6g38950
malus_domestica	MD09G1145900.v1.1 MD17G1132400.v1.1
prunus_persica	Prupe.3G179900_v2.0.a1
pyrus_communis	pycom09g06620 pycom17g12600
rosa_chinensis	RchiOBHm_Chr2g0152541
rosa_laevigata	RLG00000020644
rosa_multiflora	Rmu_sc0014904.1_g000002 Rmu_sc0027677.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095620
rosa_rugosa	Rorug02G0434300 Rorug02G0434400
rosa_samantha	Rh2AG495600 Rh2BG507400 Rh2CG481800 Rh2DG518700
rosa_wichuraiana	Rw2G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AciI	CCGC	2 cut(s)	678, 781
AclWI	GGATC	2 cut(s)	454, 473
AcoI	YGGCCR	2 cut(s)	393, 675
AcsI	RAATTY	2 cut(s)	186, 520
AcuI	CTGAAG	2 cut(s)	81, 702
AdeI	CACNNNGTG	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	352, 743
AflII	CTTAAG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	23, 68, 80
AjnI	CCWGG	2 cut(s)	91, 637
AluBI	AGCT	4 cut(s)	313, 391, 540, 580
AluI	AGCT	4 cut(s)	313, 391, 540, 580
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	454, 473
AlwNI	CAGNNNCTG	2 cut(s)	251, 644
AoxI	GGCC	2 cut(s)	393, 675
ApeKI	GCWGC	3 cut(s)	251, 332, 428
ApoI	RAATTY	2 cut(s)	186, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	531, 586
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	3 cut(s)	190, 728, 758
AvaII	GGWCC	2 cut(s)	531, 586
BalI	TGGCCA	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	238, 344, 415
BccI	CCATC	2 cut(s)	205, 221
BciT130I	CCWGG	2 cut(s)	93, 639
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	535, 688
BfrI	CTTAAG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	774
BisI	GCNGC	4 cut(s)	252, 333, 429, 678
BlsI	GCNGC	4 cut(s)	253, 334, 430, 679
Bme1390I	CCNGG	3 cut(s)	93, 590, 639
Bme18I	GGWCC	2 cut(s)	531, 586
BmgT120I	GGNCC	2 cut(s)	531, 586
BmiI	GGNNCC	3 cut(s)	532, 587, 588
BmrFI	CCNGG	3 cut(s)	93, 590, 639
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	3 cut(s)	238, 460, 684
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	2 cut(s)	687, 725
Bpu10I	CCTNAGC	2 cut(s)	167, 581
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	346, 526, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 743
Bse1I	ACTGG	4 cut(s)	326, 509, 670, 737
Bse3DI	GCAATG	2 cut(s)	336, 678
BseBI	CCWGG	2 cut(s)	93, 639
BseDI	CCNNGG	3 cut(s)	346, 526, 637
BseGI	GGATG	3 cut(s)	43, 232, 699
BseLI	CCNNNNNNNGG	2 cut(s)	352, 743
BseMI	GCAATG	2 cut(s)	336, 678
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	4 cut(s)	326, 509, 670, 737
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	3 cut(s)	238, 344, 415
BseYI	CCCAGC	1 cut(s)	611
BshFI	GGCC	2 cut(s)	395, 677
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	352, 743
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	395, 677
Bsp143I	GATC	5 cut(s)	233, 459, 478, 565, 774
BspACI	CCGC	2 cut(s)	678, 781
BspANI	GGCC	2 cut(s)	395, 677
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	532, 587, 588
BspMAI	CTGCAG	1 cut(s)	692
BspPI	GGATC	2 cut(s)	454, 473
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	336, 678
BsrI	ACTGG	4 cut(s)	326, 509, 670, 737
BssECI	CCNNGG	3 cut(s)	346, 526, 637
BssMI	GATC	5 cut(s)	233, 459, 478, 565, 774
BssT1I	CCWWGG	2 cut(s)	346, 526
Bst2UI	CCWGG	2 cut(s)	93, 639
Bst4CI	ACNGT	2 cut(s)	220, 716
Bst6I	CTCTTC	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	3 cut(s)	251, 260, 338
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	167, 581
BstF5I	GGATG	3 cut(s)	43, 232, 699
BstKTI	GATC	5 cut(s)	236, 462, 481, 568, 777
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	5 cut(s)	233, 459, 478, 565, 774
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 260, 338, 437, 617, 668, 677
BstNI	CCWGG	2 cut(s)	93, 639
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	91, 588, 637
BstSFI	CTRYAG	2 cut(s)	535, 688
BstV1I	GCAGC	3 cut(s)	238, 344, 415
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	2 cut(s)	459, 774
BstYI	RGATCY	2 cut(s)	459, 774
BsuRI	GGCC	2 cut(s)	395, 677
BtsCI	GGATG	3 cut(s)	43, 232, 699
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	2 cut(s)	251, 644
Cfr13I	GGNCC	2 cut(s)	531, 586
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	6 cut(s)	12, 101, 563, 650, 742, 757
DdeI	CTNAG	2 cut(s)	167, 581
DpnI	GATC	5 cut(s)	235, 461, 480, 567, 776
DpnII	GATC	5 cut(s)	233, 459, 478, 565, 774
DraI	TTTAAA	1 cut(s)	28
DraIII	CACNNNGTG	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	393, 675
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	346, 526
Eco47I	GGWCC	2 cut(s)	531, 586
Eco57I	CTGAAG	2 cut(s)	81, 702
EcoO109I	RGGNCCY	2 cut(s)	531, 586
EcoRII	CCWGG	2 cut(s)	91, 637
EcoT14I	CCWWGG	2 cut(s)	346, 526
ErhI	CCWWGG	2 cut(s)	346, 526
FaeI	CATG	6 cut(s)	15, 104, 566, 653, 745, 760
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	6 cut(s)	11, 100, 562, 649, 741, 756
Fnu4HI	GCNGC	4 cut(s)	252, 333, 429, 678
FokI	GGATG	3 cut(s)	30, 239, 706
Fsp4HI	GCNGC	4 cut(s)	252, 333, 429, 678
GluI	GCNGC	4 cut(s)	252, 333, 429, 678
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	2 cut(s)	687, 725
HaeIII	GGCC	2 cut(s)	395, 677
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	6 cut(s)	15, 104, 566, 653, 745, 760
HinfI	GANTC	3 cut(s)	36, 55, 484
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	190, 728, 758
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	4 cut(s)	418, 478, 483, 774
Hpy188III	TCNNGA	5 cut(s)	59, 155, 454, 467, 704
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	2 cut(s)	319, 473
HpyCH4III	ACNGT	2 cut(s)	220, 716
HpyCH4V	TGCA	8 cut(s)	245, 254, 379, 440, 448, 649, 656, 690
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 260, 338, 437, 617, 668, 677
HpyF3I	CTNAG	2 cut(s)	167, 581
Hsp92II	CATG	6 cut(s)	15, 104, 566, 653, 745, 760
KflI	GGGWCCC	1 cut(s)	586
Kzo9I	GATC	5 cut(s)	233, 459, 478, 565, 774
LmnI	GCTCC	2 cut(s)	668, 706
Lsp1109I	GCAGC	3 cut(s)	238, 344, 415
LweI	GCATC	3 cut(s)	238, 460, 684
MaeIII	GTNAC	3 cut(s)	52, 178, 214
MalI	GATC	5 cut(s)	235, 461, 480, 567, 776
MboI	GATC	5 cut(s)	233, 459, 478, 565, 774
MboII	GAAGA	4 cut(s)	92, 434, 469, 695
MflI	RGATCY	2 cut(s)	459, 774
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	8 cut(s)	23, 72, 186, 255, 357, 433, 520, 768
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	45, 49
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	7 cut(s)	186, 217, 279, 418, 610, 742, 745
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	2 cut(s)	27, 282
Msp20I	TGGCCA	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	3 cut(s)	93, 590, 639
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	93, 639
MwoI	GCNNNNNNNGC	7 cut(s)	251, 260, 338, 437, 617, 668, 677
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	233, 459, 478, 565, 774
NlaIII	CATG	6 cut(s)	15, 104, 566, 653, 745, 760
NlaIV	GGNNCC	3 cut(s)	532, 587, 588
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	2 cut(s)	52, 178
NspI	RCATGY	1 cut(s)	15
PciI	ACATGT	1 cut(s)	11
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	253, 334, 430, 679
PleI	GAGTC	2 cut(s)	44, 49
PpsI	GAGTC	2 cut(s)	44, 49
PpuMI	RGGWCCY	2 cut(s)	531, 586
PscI	ACATGT	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	134
Psp5II	RGGWCCY	2 cut(s)	531, 586
Psp6I	CCWGG	2 cut(s)	91, 637
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	91, 637
PspN4I	GGNNCC	3 cut(s)	532, 587, 588
PspPI	GGNCC	2 cut(s)	531, 586
PspPPI	RGGWCCY	2 cut(s)	531, 586
PstI	CTGCAG	1 cut(s)	692
PstNI	CAGNNNCTG	2 cut(s)	251, 644
PsuI	RGATCY	2 cut(s)	459, 774
SaqAI	TTAA	2 cut(s)	27, 282
SatI	GCNGC	4 cut(s)	252, 333, 429, 678
Sau3AI	GATC	5 cut(s)	233, 459, 478, 565, 774
Sau96I	GGNCC	2 cut(s)	531, 586
SchI	GAGTC	2 cut(s)	45, 49
ScrFI	CCNGG	3 cut(s)	93, 590, 639
SetI	ASST	9 cut(s)	154, 315, 348, 393, 542, 582, 603, 643, 756
SfaNI	GCATC	3 cut(s)	238, 460, 684
SfcI	CTRYAG	2 cut(s)	535, 688
SinI	GGWCC	2 cut(s)	531, 586
SmiI	ATTTAAAT	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	281, 452
SmoI	CTYRAG	2 cut(s)	281, 452
Sse9I	AATT	8 cut(s)	23, 72, 186, 255, 357, 433, 520, 768
SsiI	CCGC	2 cut(s)	678, 781
StyD4I	CCNGG	3 cut(s)	91, 588, 637
StyI	CCWWGG	2 cut(s)	346, 526
SwaI	ATTTAAAT	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	220, 716
TaqI	TCGA	1 cut(s)	732
TasI	AATT	8 cut(s)	23, 72, 186, 255, 357, 433, 520, 768
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	27, 282
Tru9I	TTAA	2 cut(s)	27, 282
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	2 cut(s)	52, 178
TseI	GCWGC	3 cut(s)	251, 332, 428
Tsp45I	GTSAC	2 cut(s)	52, 178
TspDTI	ATGAA	2 cut(s)	435, 476
TspRI	CASTG	1 cut(s)	509
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	531, 586
XapI	RAATTY	2 cut(s)	186, 520
XceI	RCATGY	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.