Rroxscaffold_2G00095620

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
16987145 .. 16990678
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095620.1

Sequence Viewer

Length: 1356 bp
ATGGCTGGAGTTGCAGCTGCTCGTGCTCTCCAAGATGCATCATTCCAGGTTGTGCTGTTGGAGTCTCGGGATCGACTTGGTGGTCGAGTTCACACCGATTACTCGTTTGGTTTTCCGATTGACTTGGGTGCATCATGGTTGCATGGAGTATGTAAAGAGAATCCCTTGGCTCCATTAATTGGGAGACTGGGCTTGCCTTTATATCGAACCAGTGGTGATAACTCTGTGTTGTATGATCATGACTTAGAAAGCTATGCACTCTTTGATATGGATGGGAAGCAAGTTCCTCAAGATTTGGTTACAAAAGTTGGTACTGATGAGGTAAGAAAGGAACTCTCAGAAGACATGTCCATCACCCGCGCTTTCTCAATTGTCTTTGAAAGGAAACCAGAATTAAGGTTGGAAGGAATTTCCCATAAGGTACTGCAGTGGTATTTGTGCCGAATGGAAGGCTGGTTTGCAGCAGATGCTGATACAATTTCACTTAAAAGCTGGGATCAGGCAAGCTTCTCATCTATTCTTGAAGAACTGCTTCCTGGTGGTCATGGTCTTATGGTCAGGGGCTATCGCCCTGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCCTGAGCCACAGGGTGACAAAAATTTTGAGGCGATATAATGGCGTGATGGTAACAGTAGAGGATGGGAGATCATTTGTTGCAGATGCTGCAATTATTGCTGTTCCTCTCGGTGTGCTCAAGGCAAATACCATAAAGTTTGAGCCAAAGCTACCCGACTGGAAGGAAGCAGCCATTGCTGACCTTGGAGTGGGAATTGAGAATAAGATAGTGCTGCACTTTGAGAAGGTGTTCTGGCCTAATGTGGAGTTTTTAGGAGTGGTTGCGGAGACATCTTACTGTTGCAGCTACTTTCTAAATCTTCACAAGGCAACTGGTCACTCTGTGCTTGTTTATATGCCTGCAGGGCAGCTGGCCAGAGACATTGAGAAAATGTCCGATGAAGAGGCTGCTAATTTTGCATATATGCAACTCAAGAAGATCCTTCCAGATGCTTCTGATCCGATTCATTTTCTTGTTTCTCACTGGGGAACAGATATAAATTCCCTTGGGTCCTATAGCTATGATATGGTAGGCAAACCCCATGATCTGTATGAGAAGCTAAGGGTCCCGGTAGATAACCTGTTCTTTGCTGGGGAGGCAACAAGCGTGGACTTCCCAGGTTCTGTGCATGGTGCATTTGCTACTGGAGCAATGGCCGCTGAAGACTGCAGGATGCGCGTTCTGGAGCGATATGGTGAGTTGGATTTGTTCGAGCCAGTCATGGGTGAGGAGGTCATGTCTATCCCAATTCAGATCTCCCGCATGTAA

Protein Analysis

451

Amino Acids

50.19

Weight (kDa)

5.31

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 1 - 419 3e-93 Flavin containing amine oxidoreductase
NAD_binding_8 PF13450 1 - 54 7.5e-10 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AasI GACNNNNNNGTC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 2 cut(s) 360, 1266
AciI CCGC 4 cut(s) 358, 872, 1245, 1348
AclWI GGATC 4 cut(s) 78, 504, 1021, 1040
AcoI YGGCCR 2 cut(s) 960, 1242
AcsI RAATTY 3 cut(s) 408, 630, 1087
AcuI CTGAAG 1 cut(s) 1269
AdeI CACNNNGTG 2 cut(s) 622, 931
AfaI GTAC 2 cut(s) 313, 423
AfiI CCNNNNNNNGG 3 cut(s) 179, 796, 1310
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 2 cut(s) 380, 524
AjnI CCWGG 3 cut(s) 45, 535, 1204
AluBI AGCT 9 cut(s) 17, 252, 492, 507, 757, 894, 958, 1107, 1147
AluI AGCT 9 cut(s) 17, 252, 492, 507, 757, 894, 958, 1107, 1147
Alw21I GWGCWC 2 cut(s) 28, 726
Alw26I GTCTC 4 cut(s) 69, 178, 869, 960
AlwI GGATC 4 cut(s) 78, 504, 1021, 1040
AlwNI CAGNNNCTG 3 cut(s) 470, 695, 1211
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 842, 960, 1242
ApeKI GCWGC 9 cut(s) 14, 17, 461, 695, 776, 820, 891, 955, 995
ApoI RAATTY 3 cut(s) 408, 630, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
AseI ATTAAT 1 cut(s) 176
Asp700I GAANNNNTTC 2 cut(s) 531, 836
AspLEI GCGC 2 cut(s) 362, 1266
AspS9I GGNCC 2 cut(s) 1098, 1153
AsuC2I CCSGG 1 cut(s) 1157
AsuHPI GGTGA 5 cut(s) 227, 346, 634, 1295, 1325
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 2 cut(s) 1098, 1153
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BalI TGGCCA 1 cut(s) 962
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 348, 1257
Bbv12I GWGCWC 2 cut(s) 28, 726
BbvI GCAGC 9 cut(s) 4, 26, 473, 682, 788, 807, 903, 967, 982
BccI CCATC 4 cut(s) 266, 359, 649, 665
BciT130I CCWGG 3 cut(s) 47, 537, 1206
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 1157
BcoDI GTCTC 4 cut(s) 69, 178, 869, 960
BfmI CTRYAG 4 cut(s) 425, 948, 1102, 1255
BglI GCCNNNNNGGC 1 cut(s) 952
BglII AGATCT 1 cut(s) 1341
Bme1390I CCNGG 4 cut(s) 47, 537, 1157, 1206
Bme18I GGWCC 2 cut(s) 1098, 1153
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 1098, 1153
BmiI GGNNCC 4 cut(s) 171, 1099, 1154, 1155
BmrFI CCNGG 4 cut(s) 47, 537, 1157, 1206
BmrI ACTGGG 2 cut(s) 197, 1081
BmsI GCATC 7 cut(s) 25, 47, 140, 457, 682, 1027, 1251
BmuI ACTGGG 2 cut(s) 197, 1081
BpiI GAAGAC 2 cut(s) 348, 1257
BpmI CTGGAG 3 cut(s) 27, 1254, 1292
Bpu10I CCTNAGC 2 cut(s) 611, 1148
BpuEI CTTGAG 3 cut(s) 273, 710, 1004
BpuMI CCSGG 1 cut(s) 1157
BsaJI CCNNGG 4 cut(s) 165, 790, 1093, 1204
BsaXI ACNNNNNCTCC 2 cut(s) 1310, 1340
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 796, 1310
Bse1I ACTGG 7 cut(s) 192, 210, 770, 925, 1076, 1237, 1304
Bse3DI GCAATG 2 cut(s) 780, 1245
BseBI CCWGG 3 cut(s) 47, 537, 1206
BseDI CCNNGG 4 cut(s) 165, 790, 1093, 1204
BseGI GGATG 3 cut(s) 277, 676, 1266
BseLI CCNNNNNNNGG 3 cut(s) 179, 796, 1310
BseMI GCAATG 2 cut(s) 780, 1245
BseMII CTCAG 2 cut(s) 351, 602
BseNI ACTGG 7 cut(s) 192, 210, 770, 925, 1076, 1237, 1304
BseRI GAGGAG 1 cut(s) 1331
BseXI GCAGC 9 cut(s) 4, 26, 473, 682, 788, 807, 903, 967, 982
BseYI CCCAGC 2 cut(s) 492, 1178
BsgI GTGCAG 1 cut(s) 806
Bsh1236I CGCG 2 cut(s) 360, 1266
BshFI GGCC 3 cut(s) 844, 962, 1244
BsiHKAI GWGCWC 2 cut(s) 28, 726
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 1157
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 3 cut(s) 179, 796, 1310
BsmAI GTCTC 4 cut(s) 69, 178, 869, 960
BsmFI GGGAC 1 cut(s) 1139
BsnI GGCC 3 cut(s) 844, 962, 1244
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 28, 726
Bsp143I GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
BspACI CCGC 4 cut(s) 358, 872, 1245, 1348
BspANI GGCC 3 cut(s) 844, 962, 1244
BspCNI CTCAG 2 cut(s) 350, 603
BspFNI CGCG 2 cut(s) 360, 1266
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 171, 1099, 1154, 1155
BspMAI CTGCAG 3 cut(s) 429, 952, 1259
BspPI GGATC 4 cut(s) 78, 504, 1021, 1040
BsrDI GCAATG 2 cut(s) 780, 1245
BsrI ACTGG 7 cut(s) 192, 210, 770, 925, 1076, 1237, 1304
BssECI CCNNGG 4 cut(s) 165, 790, 1093, 1204
BssMI GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 3 cut(s) 165, 790, 1093
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 47, 537, 1206
Bst4CI ACNGT 2 cut(s) 664, 887
Bst6I CTCTTC 1 cut(s) 984
BstAPI GCANNNNNTGC 4 cut(s) 467, 695, 704, 782
BstC8I GCNNGC 4 cut(s) 194, 505, 948, 960
BstDEI CTNAG 4 cut(s) 244, 337, 611, 1148
BstF5I GGATG 3 cut(s) 277, 676, 1266
BstFNI CGCG 2 cut(s) 360, 1266
BstHHI GCGC 2 cut(s) 362, 1266
BstKTI GATC 8 cut(s) 73, 238, 499, 680, 1029, 1048, 1135, 1344
BstMAI GTCTC 4 cut(s) 69, 178, 869, 960
BstMBI GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
BstNI CCWGG 3 cut(s) 47, 537, 1206
BstNSI RCATGY 2 cut(s) 349, 1354
BstSCI CCNGG 4 cut(s) 45, 535, 1155, 1204
BstSFI CTRYAG 4 cut(s) 425, 948, 1102, 1255
BstUI CGCG 2 cut(s) 360, 1266
BstV1I GCAGC 9 cut(s) 4, 26, 473, 682, 788, 807, 903, 967, 982
BstV2I GAAGAC 2 cut(s) 348, 1257
BstX2I RGATCY 2 cut(s) 1026, 1341
BstYI RGATCY 2 cut(s) 1026, 1341
BsuRI GGCC 3 cut(s) 844, 962, 1244
BtsCI GGATG 3 cut(s) 277, 676, 1266
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 3 cut(s) 217, 434, 1069
Cac8I GCNNGC 4 cut(s) 194, 505, 948, 960
CaiI CAGNNNCTG 3 cut(s) 470, 695, 1211
CciI TCATGA 1 cut(s) 238
CfoI GCGC 2 cut(s) 362, 1266
Cfr13I GGNCC 2 cut(s) 1098, 1153
Csp6I GTAC 2 cut(s) 312, 422
CspCI CAANNNNNGTGG 2 cut(s) 1176, 1211
CviQI GTAC 2 cut(s) 312, 422
DdeI CTNAG 4 cut(s) 244, 337, 611, 1148
DpnI GATC 8 cut(s) 72, 237, 498, 679, 1028, 1047, 1134, 1343
DpnII GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
DraIII CACNNNGTG 2 cut(s) 622, 931
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 960, 1242
Eam1104I CTCTTC 1 cut(s) 984
EarI CTCTTC 1 cut(s) 984
Eco130I CCWWGG 3 cut(s) 165, 790, 1093
Eco47I GGWCC 2 cut(s) 1098, 1153
Eco57I CTGAAG 1 cut(s) 1269
Eco88I CYCGRG 1 cut(s) 66
EcoO109I RGGNCCY 2 cut(s) 1098, 1153
EcoRII CCWGG 3 cut(s) 45, 535, 1204
EcoT14I CCWWGG 3 cut(s) 165, 790, 1093
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 3 cut(s) 165, 790, 1093
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 1139
FauI CCCGC 1 cut(s) 365
FbaI TGATCA 1 cut(s) 235
FokI GGATG 3 cut(s) 284, 683, 1273
GlaI GCGC 2 cut(s) 361, 1265
GsaI CCCAGC 2 cut(s) 496, 1182
GsuI CTGGAG 3 cut(s) 27, 1254, 1292
HaeIII GGCC 3 cut(s) 844, 962, 1244
HapII CCGG 1 cut(s) 1157
HhaI GCGC 2 cut(s) 362, 1266
Hin6I GCGC 2 cut(s) 360, 1264
HinP1I GCGC 2 cut(s) 360, 1264
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 3 cut(s) 62, 160, 1051
HpaII CCGG 1 cut(s) 1157
HphI GGTGA 5 cut(s) 227, 346, 634, 1295, 1325
Hpy166II GTNNAC 2 cut(s) 91, 1198
Hpy188I TCNGA 6 cut(s) 117, 340, 985, 1045, 1050, 1341
Hpy188III TCNNGA 8 cut(s) 68, 239, 290, 521, 599, 1021, 1034, 1271
Hpy8I GTNNAC 2 cut(s) 91, 1198
HpyAV CCTTC 5 cut(s) 398, 443, 763, 826, 1040
HpyCH4III ACNGT 2 cut(s) 664, 887
HpyF3I CTNAG 4 cut(s) 244, 337, 611, 1148
HspAI GCGC 2 cut(s) 360, 1264
KflI GGGWCCC 1 cut(s) 1153
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
LmnI GCTCC 3 cut(s) 175, 1235, 1273
Lsp1109I GCAGC 9 cut(s) 4, 26, 473, 682, 788, 807, 903, 967, 982
LweI GCATC 7 cut(s) 25, 47, 140, 457, 682, 1027, 1251
MaeIII GTNAC 4 cut(s) 298, 622, 658, 923
MalI GATC 8 cut(s) 72, 237, 498, 679, 1028, 1047, 1134, 1343
MboI GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
MboII GAAGA 6 cut(s) 353, 536, 899, 1001, 1036, 1262
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 1026, 1341
MhlI GDGCHC 2 cut(s) 28, 726
MlsI TGGCCA 1 cut(s) 962
MluNI TGGCCA 1 cut(s) 962
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 3 cut(s) 39, 381, 1269
MnlI CCTC 9 cut(s) 297, 313, 630, 661, 723, 985, 1177, 1309, 1312
Mox20I TGGCCA 1 cut(s) 962
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 2 cut(s) 531, 836
MscI TGGCCA 1 cut(s) 962
MseI TTAA 3 cut(s) 176, 395, 486
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 3 cut(s) 17, 958, 1247
MspI CCGG 1 cut(s) 1157
MspR9I CCNGG 4 cut(s) 47, 537, 1157, 1206
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 3 cut(s) 47, 537, 1206
MvnI CGCG 2 cut(s) 360, 1266
NciI CCSGG 1 cut(s) 1157
NdeII GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
NlaIV GGNNCC 4 cut(s) 171, 1099, 1154, 1155
NmuCI GTSAC 2 cut(s) 622, 923
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 2 cut(s) 349, 1354
PagI TCATGA 1 cut(s) 238
PciI ACATGT 1 cut(s) 345
PdmI GAANNNNTTC 2 cut(s) 531, 836
PfeI GAWTC 2 cut(s) 160, 1051
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 2 cut(s) 1098, 1153
PscI ACATGT 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 176
PsiI TTATAA 1 cut(s) 578
Psp5II RGGWCCY 2 cut(s) 1098, 1153
Psp6I CCWGG 3 cut(s) 45, 535, 1204
PspFI CCCAGC 2 cut(s) 492, 1178
PspGI CCWGG 3 cut(s) 45, 535, 1204
PspN4I GGNNCC 4 cut(s) 171, 1099, 1154, 1155
PspPI GGNCC 2 cut(s) 1098, 1153
PspPPI RGGWCCY 2 cut(s) 1098, 1153
PstI CTGCAG 3 cut(s) 429, 952, 1259
PstNI CAGNNNCTG 3 cut(s) 470, 695, 1211
PsuI RGATCY 2 cut(s) 1026, 1341
PvuII CAGCTG 2 cut(s) 17, 958
RsaI GTAC 2 cut(s) 313, 423
RsaNI GTAC 2 cut(s) 312, 422
SaqAI TTAA 3 cut(s) 176, 395, 486
Sau3AI GATC 8 cut(s) 70, 235, 496, 677, 1026, 1045, 1132, 1341
Sau96I GGNCC 2 cut(s) 1098, 1153
SbfI CCTGCAGG 1 cut(s) 952
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 47, 537, 1157, 1206
SdaI CCTGCAGG 1 cut(s) 952
SduI GDGCHC 2 cut(s) 28, 726
SfaNI GCATC 7 cut(s) 25, 47, 140, 457, 682, 1027, 1251
SfcI CTRYAG 4 cut(s) 425, 948, 1102, 1255
SinI GGWCC 2 cut(s) 1098, 1153
SmlI CTYRAG 3 cut(s) 288, 725, 1019
SmoI CTYRAG 3 cut(s) 288, 725, 1019
Sse8387I CCTGCAGG 1 cut(s) 952
SsiI CCGC 4 cut(s) 358, 872, 1245, 1348
StyD4I CCNGG 4 cut(s) 45, 535, 1155, 1204
StyI CCWWGG 3 cut(s) 165, 790, 1093
TaaI ACNGT 2 cut(s) 664, 887
TaqI TCGA 4 cut(s) 73, 85, 205, 1299
TauI GCSGC 1 cut(s) 1247
TfiI GAWTC 2 cut(s) 160, 1051
Tru1I TTAA 3 cut(s) 176, 395, 486
Tru9I TTAA 3 cut(s) 176, 395, 486
TscAI CASTG 3 cut(s) 217, 434, 1076
TseFI GTSAC 2 cut(s) 622, 923
TseI GCWGC 9 cut(s) 14, 17, 461, 695, 776, 820, 891, 955, 995
Tsp45I GTSAC 2 cut(s) 622, 923
TspDTI ATGAA 2 cut(s) 1002, 1043
TspRI CASTG 3 cut(s) 217, 434, 1076
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 1098, 1153
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 3 cut(s) 408, 630, 1087
XceI RCATGY 2 cut(s) 349, 1354
XmnI GAANNNNTTC 2 cut(s) 531, 836
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.